Wall clock time and date at job start Tue Mar 31 2020 13:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99880 * 2 1 4 4 O 1.21633 * 119.99950 * 185.57221 * 3 2 1 5 5 C 1.47264 * 120.00169 * 5.56512 * 3 2 1 6 6 C 1.35196 * 123.14357 * 185.94256 * 5 3 2 7 7 S 1.70948 * 108.83003 * 179.87456 * 6 5 3 8 8 C 1.70771 * 91.12516 * 0.32823 * 7 6 5 9 9 C 1.50697 * 124.71868 * 179.76731 * 8 7 6 10 10 C 1.53001 * 109.47568 * 240.04352 * 9 8 7 11 11 C 1.53005 * 109.47252 * 0.04555 * 9 8 7 12 12 C 1.52999 * 109.47190 * 120.04289 * 9 8 7 13 13 N 1.28647 * 110.56034 * 359.80962 * 8 7 6 14 14 C 1.46496 * 119.99921 * 179.97438 * 2 1 3 15 15 C 1.53497 * 114.20606 * 60.00480 * 14 2 1 16 16 N 1.47064 * 87.98349 * 220.14487 * 15 14 2 17 17 C 1.36943 * 136.05574 * 207.07951 * 16 15 14 18 18 H 1.07998 * 120.00050 * 354.77645 * 17 16 15 19 19 C 1.38813 * 119.99814 * 174.76839 * 17 16 15 20 20 N 1.31617 * 119.99873 * 184.07164 * 19 17 16 21 21 Si 1.86802 * 120.00016 * 4.07899 * 19 17 16 22 22 H 1.48498 * 109.47262 * 174.25940 * 21 19 17 23 23 H 1.48499 * 109.47023 * 294.25904 * 21 19 17 24 24 H 1.48497 * 109.47119 * 54.25831 * 21 19 17 25 25 C 1.47063 * 87.88603 * 27.34351 * 16 15 14 26 26 H 1.09000 * 109.47327 * 275.75862 * 1 2 3 27 27 H 1.08998 * 109.46680 * 35.75819 * 1 2 3 28 28 H 1.08998 * 109.46929 * 155.75354 * 1 2 3 29 29 H 1.07998 * 125.58945 * 0.02562 * 6 5 3 30 30 H 1.09000 * 109.46706 * 60.00065 * 10 9 8 31 31 H 1.08994 * 109.47581 * 180.02562 * 10 9 8 32 32 H 1.09003 * 109.46812 * 300.00110 * 10 9 8 33 33 H 1.08995 * 109.47066 * 59.99369 * 11 9 8 34 34 H 1.08994 * 109.47151 * 179.97438 * 11 9 8 35 35 H 1.09006 * 109.46993 * 299.99596 * 11 9 8 36 36 H 1.09003 * 109.47102 * 59.99944 * 12 9 8 37 37 H 1.08994 * 109.47277 * 179.97438 * 12 9 8 38 38 H 1.09004 * 109.46969 * 300.00504 * 12 9 8 39 39 H 1.08997 * 113.27919 * 193.06533 * 14 2 1 40 40 H 1.09001 * 113.47037 * 105.36546 * 15 14 2 41 41 H 1.09002 * 113.46558 * 334.92505 * 15 14 2 42 42 H 0.96990 * 120.00053 * 5.01451 * 20 19 17 43 43 H 1.08994 * 113.47096 * 87.43991 * 25 16 15 44 44 H 1.09004 * 113.46483 * 217.88159 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3510 1.1698 -0.1023 5 6 1.4078 2.4396 0.1237 6 6 2.0038 3.6482 0.0145 7 16 0.8213 4.8665 0.2141 8 6 -0.3981 3.6928 0.4412 9 6 -1.8497 4.0026 0.7018 10 6 -2.2638 3.4097 2.0501 11 6 -2.0508 5.5191 0.7281 12 6 -2.7084 3.3936 -0.4085 13 7 0.0950 2.5074 0.3599 14 6 2.1975 -1.2687 0.0006 15 6 1.9061 -2.1642 -1.2115 16 7 1.9169 -3.3163 -0.2975 17 6 2.1884 -4.6545 -0.4009 18 1 2.3954 -5.0904 -1.3672 19 6 2.1978 -5.4507 0.7361 20 7 2.5370 -6.7194 0.6483 21 14 1.7290 -4.7216 2.3908 22 1 1.6836 -5.7992 3.4116 23 1 2.7370 -3.7059 2.7877 24 1 0.3936 -4.0801 2.2885 25 6 1.5015 -2.3999 0.7751 26 1 -0.3634 0.1031 1.0225 27 1 -0.3632 0.8339 -0.6005 28 1 -0.3633 -0.9370 -0.4220 29 1 3.0543 3.8165 -0.1710 30 1 -1.6521 3.8436 2.8410 31 1 -3.3138 3.6334 2.2383 32 1 -2.1206 2.3293 2.0312 33 1 -1.7558 5.9415 -0.2324 34 1 -3.1008 5.7432 0.9161 35 1 -1.4391 5.9531 1.5192 36 1 -2.5651 2.3131 -0.4273 37 1 -3.7583 3.6172 -0.2198 38 1 -2.4134 3.8159 -1.3691 39 1 3.2575 -1.1540 0.2269 40 1 2.7146 -2.1823 -1.9424 41 1 0.9320 -1.9785 -1.6642 42 1 2.8501 -7.0804 -0.1958 43 1 0.4209 -2.2763 0.8462 44 1 1.9654 -2.6188 1.7369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044055942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:41 Heat of formation + Delta-G solvation = 81.565199 kcal Electronic energy + Delta-G solvation = -25542.699436 eV Core-core repulsion = 22010.761646 eV Total energy + Delta-G solvation = -3531.937790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86916 -39.44312 -38.02846 -36.81198 -34.61152 -32.24094 -30.32688 -28.22709 -27.87864 -27.63063 -26.70654 -26.01812 -25.35831 -23.69363 -21.78269 -19.78788 -19.66233 -18.93833 -18.28941 -17.46698 -16.53473 -16.23182 -15.78912 -15.69903 -15.23653 -14.90272 -14.54031 -14.13446 -14.00044 -13.59810 -13.54815 -13.15056 -12.79715 -12.71817 -12.54286 -12.39799 -12.18901 -12.07973 -12.00322 -11.89321 -11.76172 -11.52212 -11.45098 -11.32336 -11.27056 -10.55151 -10.37904 -10.03335 -9.86121 -9.67408 -9.32658 -9.15330 -9.13060 -8.92747 -8.22928 -7.16731 -6.31621 -3.24952 0.31906 0.98424 1.39134 1.86083 3.13942 3.32848 3.41459 3.44720 3.60088 3.65825 4.27529 4.45865 4.49048 4.59035 4.74998 4.84378 4.96642 5.07920 5.12057 5.14401 5.19975 5.35752 5.39376 5.42019 5.45067 5.47655 5.51243 5.57156 5.69678 5.76311 5.84388 5.89532 5.92789 5.96628 6.12654 6.17862 6.26661 6.38875 6.54399 6.94563 7.06910 7.25247 7.57861 8.22664 8.24692 8.96540 9.48120 10.32594 11.20029 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.003226 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.150366 B = 8677.164525 C = 9316.832321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.582 5.582 3 C 0.588 3.412 4 O -0.538 6.538 5 C 0.019 3.981 6 C -0.232 4.232 7 S 0.201 5.799 8 C 0.033 3.967 9 C 0.013 3.987 10 C -0.136 4.136 11 C -0.155 4.155 12 C -0.136 4.136 13 N -0.431 5.431 14 C 0.101 3.899 15 C 0.113 3.887 16 N -0.621 5.621 17 C -0.302 4.302 18 H 0.085 0.915 19 C -0.023 4.023 20 N -0.933 5.933 21 Si 1.072 2.928 22 H -0.294 1.294 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.085 3.915 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.187 0.813 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.125 0.875 40 H 0.051 0.949 41 H 0.040 0.960 42 H 0.261 0.739 43 H 0.049 0.951 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 29.888 0.100 32.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.313 5.313 3 C 0.373 3.627 4 O -0.416 6.416 5 C -0.116 4.116 6 C -0.374 4.374 7 S 0.459 5.541 8 C -0.247 4.247 9 C 0.009 3.991 10 C -0.194 4.194 11 C -0.213 4.213 12 C -0.195 4.195 13 N -0.146 5.146 14 C -0.003 4.003 15 C -0.015 4.015 16 N -0.349 5.349 17 C -0.428 4.428 18 H 0.102 0.898 19 C -0.222 4.222 20 N -0.575 5.575 21 Si 0.905 3.095 22 H -0.221 1.221 23 H -0.219 1.219 24 H -0.216 1.216 25 C -0.041 4.041 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.205 0.795 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.435 29.791 1.650 31.953 hybrid contribution 0.696 -0.538 -1.790 1.995 sum -10.740 29.253 -0.140 31.162 Atomic orbital electron populations 1.22029 0.78463 1.02620 1.02527 1.47728 1.07734 1.05241 1.70573 1.17176 0.86211 0.82177 0.77163 1.90805 1.13079 1.86763 1.50904 1.20474 0.89009 0.94963 1.07122 1.26631 1.06951 0.96175 1.07609 1.82775 0.97275 1.11125 1.62883 1.27346 1.01554 0.91490 1.04292 1.19229 0.85677 0.96347 0.97869 1.21859 1.01303 1.02137 0.94144 1.22040 1.03402 0.93227 1.02635 1.21863 0.98817 1.02005 0.96791 1.67228 1.09853 1.23177 1.14331 1.23611 0.97714 0.79572 0.99417 1.22744 0.98788 0.86100 0.93827 1.45789 1.79234 1.03922 1.05946 1.20150 1.46094 0.80264 0.96263 0.89763 1.25710 0.99771 0.95009 1.01671 1.70913 1.45854 1.12235 1.28496 0.83691 0.76126 0.73600 0.76062 1.22144 1.21934 1.21630 1.23258 0.97762 0.88247 0.94864 0.92357 0.89719 0.91305 0.79538 0.92478 0.91540 0.91171 0.91805 0.90537 0.91787 0.91196 0.91509 0.92469 0.85759 0.93105 0.94202 0.92861 0.93362 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 7.99 59.85 0.48 1.70 16 2 N -0.58 -9.90 3.12 -174.88 -0.54 -10.45 16 3 C 0.59 10.03 7.64 -12.59 -0.10 9.94 16 4 O -0.54 -10.65 16.27 5.25 0.09 -10.56 16 5 C 0.02 0.26 6.43 -84.53 -0.54 -0.28 16 6 C -0.23 -2.59 10.62 29.65 0.31 -2.27 16 7 S 0.20 1.56 21.28 -107.50 -2.29 -0.73 16 8 C 0.03 0.30 5.74 -13.61 -0.08 0.22 16 9 C 0.01 0.08 0.99 -155.66 -0.15 -0.07 16 10 C -0.14 -0.90 8.45 37.16 0.31 -0.59 16 11 C -0.16 -0.70 7.53 37.16 0.28 -0.42 16 12 C -0.14 -0.86 8.45 37.16 0.31 -0.55 16 13 N -0.43 -5.09 6.94 -8.51 -0.06 -5.15 16 14 C 0.10 2.01 4.55 -67.68 -0.31 1.70 16 15 C 0.11 2.38 8.23 -8.51 -0.07 2.31 16 16 N -0.62 -15.85 3.69 -184.63 -0.68 -16.53 16 17 C -0.30 -8.91 11.09 -15.06 -0.17 -9.08 16 18 H 0.08 2.60 8.05 -52.49 -0.42 2.18 16 19 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 20 N -0.93 -29.89 13.70 55.49 0.76 -29.13 16 21 Si 1.07 27.50 25.10 -169.99 -4.27 23.23 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.29 -7.13 6.33 56.52 0.36 -6.77 16 24 H -0.29 -6.91 6.68 56.52 0.38 -6.53 16 25 C 0.08 1.88 5.33 -8.38 -0.04 1.83 16 26 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 27 H 0.08 1.09 5.89 -51.93 -0.31 0.79 16 28 H 0.07 1.00 5.95 -51.93 -0.31 0.69 16 29 H 0.19 1.95 8.04 -52.49 -0.42 1.53 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.27 7.91 -51.93 -0.41 -0.15 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.12 2.64 7.33 -51.93 -0.38 2.26 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.79 7.05 -51.93 -0.37 0.42 16 42 H 0.26 8.25 8.73 -40.82 -0.36 7.90 16 43 H 0.05 1.01 6.37 -51.93 -0.33 0.68 16 44 H 0.06 1.37 4.01 -51.93 -0.21 1.16 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -34.59 359.17 -8.03 -42.62 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.59 Total: -2.37 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 0.14 Total: 3.65 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.52 Total: -61.25 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 27.50 SS G_CDS: -4.27 Total: 23.23 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.29 Total: -0.73 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.59 -8.03 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044055942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.183 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds