Wall clock time and date at job start Tue Mar 31 2020 13:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47045 * 2 1 4 4 C 1.50696 * 109.47212 * 120.00067 * 2 1 3 5 5 N 1.28655 * 124.71948 * 120.28476 * 4 2 1 6 6 C 1.33563 * 115.76291 * 180.15261 * 5 4 2 7 7 C 1.47269 * 123.13694 * 179.82668 * 6 5 4 8 8 O 1.21631 * 119.99807 * 185.74144 * 7 6 5 9 9 N 1.34781 * 120.00126 * 5.74221 * 7 6 5 10 10 C 1.46498 * 119.99569 * 6.11715 * 9 7 6 11 11 C 1.46496 * 119.99681 * 185.84209 * 9 7 6 12 12 C 1.52999 * 109.47156 * 87.69450 * 11 9 7 13 13 H 1.08996 * 112.96903 * 66.03520 * 12 11 9 14 14 C 1.53944 * 113.76718 * 294.35222 * 12 11 9 15 15 C 1.53944 * 86.28992 * 222.09289 * 14 12 11 16 16 N 1.47578 * 86.11884 * 23.60980 * 15 14 12 17 17 C 1.36939 * 134.49665 * 155.35494 * 16 15 14 18 18 H 1.07996 * 119.99853 * 185.30690 * 17 16 15 19 19 C 1.38810 * 119.99861 * 5.31021 * 17 16 15 20 20 N 1.31628 * 119.99840 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00162 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46773 * 60.00258 * 21 19 17 23 23 H 1.48499 * 109.47069 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47104 * 300.00329 * 21 19 17 25 25 C 1.35198 * 113.71906 * 359.56017 * 6 5 4 26 26 S 1.70771 * 124.72266 * 299.97429 * 4 2 1 27 27 H 1.08997 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47170 * 300.00057 * 1 2 3 29 29 H 1.09001 * 109.47291 * 59.99748 * 1 2 3 30 30 H 1.09002 * 109.47170 * 239.99943 * 2 1 3 31 31 H 1.09000 * 109.47021 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47068 * 299.99901 * 3 2 1 33 33 H 1.08997 * 109.46940 * 60.00361 * 3 2 1 34 34 H 1.09008 * 109.47050 * 274.71949 * 10 9 7 35 35 H 1.08989 * 109.47776 * 34.72231 * 10 9 7 36 36 H 1.09000 * 109.46835 * 154.72400 * 10 9 7 37 37 H 1.09002 * 109.46457 * 207.69192 * 11 9 7 38 38 H 1.08998 * 109.47181 * 327.68648 * 11 9 7 39 39 H 1.08999 * 113.74254 * 336.43945 * 14 12 11 40 40 H 1.08999 * 113.73577 * 107.64319 * 14 12 11 41 41 H 1.09004 * 113.77074 * 137.90988 * 15 14 12 42 42 H 1.09003 * 113.77267 * 269.19363 * 15 14 12 43 43 H 0.97000 * 119.99737 * 179.97438 * 20 19 17 44 44 H 1.08003 * 125.58868 * 180.23160 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7794 -1.7578 1.2182 6 6 3.1177 -2.2436 2.4154 7 6 3.9629 -3.4368 2.5905 8 8 4.1503 -3.8913 3.7030 9 7 4.5288 -4.0251 1.5180 10 6 4.4148 -3.4034 0.1964 11 6 5.2629 -5.2831 1.6750 12 6 4.2920 -6.4591 1.5506 13 1 3.8621 -6.5520 0.5533 14 6 3.2521 -6.5276 2.6835 15 6 3.5087 -8.0455 2.6920 16 7 4.8195 -7.7258 2.0939 17 6 6.0364 -8.3528 2.0577 18 1 6.8859 -7.8575 1.6112 19 6 6.1780 -9.6249 2.5948 20 7 5.1424 -10.2287 3.1385 21 14 7.8378 -10.4804 2.5449 22 1 8.8367 -9.6663 3.2827 23 1 7.7244 -11.8182 3.1794 24 1 8.2719 -10.6366 1.1334 25 6 2.6165 -1.5343 3.4515 26 16 1.6954 -0.2329 2.8350 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.4766 -3.7070 -0.2683 35 1 4.4335 -2.3188 0.3022 36 1 5.2493 -3.7220 -0.4282 37 1 6.0254 -5.3578 0.8997 38 1 5.7383 -5.3064 2.6555 39 1 3.5657 -6.0244 3.5982 40 1 2.2445 -6.2529 2.3714 41 1 3.5749 -8.4743 3.6919 42 1 2.8475 -8.6065 2.0315 43 1 5.2413 -11.1178 3.5135 44 1 2.7724 -1.7538 4.4975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085875701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:41 Heat of formation + Delta-G solvation = 50.571634 kcal Electronic energy + Delta-G solvation = -25322.606900 eV Core-core repulsion = 21789.325128 eV Total energy + Delta-G solvation = -3533.281772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.78887 -40.29192 -39.18489 -36.55716 -36.39131 -34.24319 -31.18329 -30.24540 -29.86754 -28.00376 -27.59299 -26.60847 -25.32433 -24.59943 -23.07496 -21.43235 -20.89281 -20.24743 -19.17436 -18.67755 -17.52805 -17.21865 -17.02891 -16.70524 -16.42929 -15.87232 -15.73921 -15.27295 -15.01612 -14.90691 -14.29316 -14.17999 -14.01434 -13.84840 -13.72591 -13.39943 -13.28170 -12.98489 -12.98163 -12.83561 -12.60197 -12.56976 -12.52055 -12.31367 -12.09231 -11.85264 -11.82031 -11.64592 -11.27424 -11.14818 -10.85989 -10.64297 -10.53193 -9.91193 -9.61915 -8.91069 -7.90305 -5.24068 -0.49639 0.26621 0.62189 0.93004 1.43275 1.48296 1.53867 1.96405 2.26712 2.48777 2.87439 3.29076 3.39397 3.62908 3.85643 3.99407 4.11037 4.18660 4.20925 4.23436 4.28287 4.40763 4.41974 4.52170 4.65875 4.74675 4.80052 4.82324 4.87882 4.96246 4.97972 5.00285 5.03348 5.10898 5.19896 5.21327 5.37720 5.40491 5.48192 5.52913 5.70430 5.91675 6.29301 6.49876 6.90249 7.08533 7.60347 8.57225 9.27886 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.002748 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.665397 B =10187.705119 C =10366.767884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.019 4.019 3 C -0.146 4.146 4 C 0.020 3.980 5 N -0.453 5.453 6 C -0.007 4.007 7 C 0.581 3.419 8 O -0.568 6.568 9 N -0.593 5.593 10 C 0.093 3.907 11 C 0.131 3.869 12 C 0.135 3.865 13 H 0.055 0.945 14 C -0.136 4.136 15 C 0.163 3.837 16 N -0.626 5.626 17 C -0.232 4.232 18 H 0.088 0.912 19 C -0.072 4.072 20 N -0.958 5.958 21 Si 0.982 3.018 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.273 1.273 25 C -0.245 4.245 26 S 0.286 5.714 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.020 0.980 43 H 0.248 0.752 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.697 29.764 -8.041 32.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.041 4.041 3 C -0.204 4.204 4 C -0.259 4.259 5 N -0.169 5.169 6 C -0.141 4.141 7 C 0.367 3.633 8 O -0.448 6.448 9 N -0.323 5.323 10 C -0.049 4.049 11 C 0.007 3.993 12 C 0.028 3.972 13 H 0.072 0.928 14 C -0.174 4.174 15 C 0.037 3.963 16 N -0.353 5.353 17 C -0.360 4.360 18 H 0.106 0.894 19 C -0.265 4.265 20 N -0.607 5.607 21 Si 0.809 3.191 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.198 1.198 25 C -0.387 4.387 26 S 0.545 5.455 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.749 29.837 -7.498 32.588 hybrid contribution 1.461 -2.321 0.410 2.773 sum -9.288 27.516 -7.087 29.894 Atomic orbital electron populations 1.21960 0.91984 1.02552 1.04074 1.19991 0.96901 0.95919 0.91301 1.21953 1.01455 0.92968 1.04043 1.27947 0.99473 0.96794 1.01653 1.67294 1.13474 1.11240 1.24890 1.20137 1.05303 0.99936 0.88759 1.17597 0.79183 0.82411 0.84064 1.90791 1.62714 1.65603 1.25681 1.47653 1.52587 1.22639 1.09468 1.22138 1.01961 0.99480 0.81325 1.21481 0.93857 0.81761 1.02244 1.22633 0.92565 0.86298 0.95663 0.92754 1.23590 0.97737 0.96846 0.99228 1.22003 0.85354 0.92800 0.96136 1.46276 1.06725 1.20827 1.61425 1.19415 0.86505 0.97480 1.32581 0.89387 1.25721 1.01307 0.97724 1.01722 1.70046 1.30872 1.14661 1.45136 0.85107 0.78832 0.77146 0.77990 1.20285 1.22144 1.19846 1.26844 1.04248 1.01700 1.05949 1.82370 1.42656 1.22417 0.98107 0.93049 0.91461 0.89193 0.88035 0.92625 0.89262 0.91495 0.92247 0.88798 0.90564 0.89341 0.92368 0.90756 0.91887 0.94961 0.96258 0.94340 0.79666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.09 71.98 0.65 -0.40 16 2 C -0.02 -0.19 3.34 -11.54 -0.04 -0.22 16 3 C -0.15 -0.88 9.09 71.98 0.65 -0.23 16 4 C 0.02 0.33 6.00 88.57 0.53 0.86 16 5 N -0.45 -10.36 6.96 -180.83 -1.26 -11.62 16 6 C -0.01 -0.18 6.43 40.56 0.26 0.08 16 7 C 0.58 20.64 6.99 86.62 0.61 21.25 16 8 O -0.57 -24.45 14.22 -4.13 -0.06 -24.51 16 9 N -0.59 -19.70 2.85 -850.85 -2.43 -22.13 16 10 C 0.09 2.29 9.24 127.77 1.18 3.48 16 11 C 0.13 5.13 5.49 86.38 0.47 5.61 16 12 C 0.14 6.03 4.58 45.09 0.21 6.24 16 13 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.14 -6.19 6.95 31.25 0.22 -5.97 16 15 C 0.16 8.78 7.39 86.48 0.64 9.42 16 16 N -0.63 -34.73 3.57 -694.12 -2.48 -37.21 16 17 C -0.23 -13.64 10.51 84.03 0.88 -12.75 16 18 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 19 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.96 -61.43 11.53 21.65 0.25 -61.18 16 21 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 25 C -0.24 -5.57 10.62 67.12 0.71 -4.85 16 26 S 0.29 3.90 22.22 -56.49 -1.26 2.65 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.37 7.92 -2.39 -0.02 0.36 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.07 0.31 7.91 -2.39 -0.02 0.29 16 34 H 0.06 1.44 8.08 -2.38 -0.02 1.42 16 35 H 0.09 2.17 5.83 -2.39 -0.01 2.15 16 36 H 0.08 1.63 7.81 -2.39 -0.02 1.61 16 37 H 0.09 3.13 7.82 -2.39 -0.02 3.11 16 38 H 0.06 2.68 7.42 -2.39 -0.02 2.66 16 39 H 0.07 3.66 6.15 -2.39 -0.01 3.65 16 40 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.03 1.93 7.41 -2.38 -0.02 1.91 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.19 4.18 8.04 -2.91 -0.02 4.16 16 Total: -1.00 -77.57 369.09 3.23 -74.33 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.99 Total: 11.23 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 7.45 Total: 18.62 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -5.92 Total: -132.14 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.06 Total: -24.51 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.26 Total: 2.65 kcal Total: -77.57 3.23 -74.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085875701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.904 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds