Wall clock time and date at job start Tue Mar 31 2020 13:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47173 * 2 1 4 4 C 1.50698 * 109.47258 * 119.99600 * 2 1 3 5 5 N 1.29429 * 124.80716 * 299.98078 * 4 2 1 6 6 C 1.30951 * 117.36076 * 179.72761 * 5 4 2 7 7 C 1.35654 * 114.19432 * 0.52473 * 6 5 4 8 8 C 1.46687 * 126.13466 * 179.78821 * 7 6 5 9 9 O 1.21691 * 119.99289 * 6.09312 * 8 7 6 10 10 N 1.34769 * 120.00476 * 186.09338 * 8 7 6 11 11 C 1.46501 * 119.99751 * 6.63185 * 10 8 7 12 12 C 1.46501 * 120.00482 * 186.62714 * 10 8 7 13 13 C 1.52999 * 109.46790 * 83.69073 * 12 10 8 14 14 H 1.08996 * 112.96743 * 316.18551 * 13 12 10 15 15 C 1.53942 * 113.76664 * 184.50666 * 13 12 10 16 16 C 1.53939 * 86.29192 * 222.09499 * 15 13 12 17 17 N 1.47576 * 86.11757 * 23.60731 * 16 15 13 18 18 C 1.36941 * 134.49289 * 155.35280 * 17 16 15 19 19 H 1.08008 * 119.99608 * 150.35344 * 18 17 16 20 20 C 1.38808 * 120.00018 * 330.35698 * 18 17 16 21 21 N 1.31623 * 119.99792 * 168.19936 * 20 18 17 22 22 Si 1.86800 * 120.00251 * 348.19901 * 20 18 17 23 23 H 1.48501 * 109.47087 * 90.87686 * 22 20 18 24 24 H 1.48500 * 109.46949 * 210.87822 * 22 20 18 25 25 H 1.48499 * 109.46888 * 330.87543 * 22 20 18 26 26 S 1.70954 * 124.80377 * 120.00009 * 4 2 1 27 27 H 1.09005 * 109.47179 * 299.99590 * 1 2 3 28 28 H 1.08997 * 109.47448 * 60.00065 * 1 2 3 29 29 H 1.09002 * 109.46681 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47662 * 240.00008 * 2 1 3 31 31 H 1.08997 * 109.46881 * 300.00283 * 3 2 1 32 32 H 1.09007 * 109.46711 * 59.99588 * 3 2 1 33 33 H 1.09000 * 109.47406 * 179.97438 * 3 2 1 34 34 H 1.08000 * 122.90075 * 180.34771 * 6 5 4 35 35 H 1.09010 * 109.46910 * 270.58407 * 11 10 8 36 36 H 1.08995 * 109.47547 * 30.58118 * 11 10 8 37 37 H 1.08998 * 109.47352 * 150.58767 * 11 10 8 38 38 H 1.09001 * 109.46556 * 323.69589 * 12 10 8 39 39 H 1.08994 * 109.47274 * 203.69540 * 12 10 8 40 40 H 1.08998 * 113.74623 * 336.44398 * 15 13 12 41 41 H 1.09006 * 113.74298 * 107.64405 * 15 13 12 42 42 H 1.09003 * 113.77408 * 137.91191 * 16 15 13 43 43 H 1.09002 * 113.77282 * 269.19243 * 16 15 13 44 44 H 0.96998 * 120.00150 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7779 -0.3498 2.4472 6 6 2.2862 -1.0782 3.4095 7 6 3.0337 -2.1251 2.9788 8 6 3.7247 -3.1018 3.8275 9 8 3.5656 -3.0797 5.0338 10 7 4.5356 -4.0234 3.2715 11 6 4.8422 -3.9613 1.8403 12 6 5.1107 -5.0874 4.0982 13 6 4.1016 -6.2294 4.2341 14 1 3.0879 -5.8801 4.4301 15 6 4.5628 -7.3560 5.1764 16 6 4.0021 -8.3296 4.1241 17 7 4.1897 -7.2324 3.1552 18 6 4.3722 -7.1701 1.7994 19 1 4.0245 -6.3097 1.2467 20 6 5.0041 -8.2126 1.1355 21 7 4.9761 -8.2685 -0.1792 22 14 5.8939 -9.5362 2.1079 23 1 4.9553 -10.6481 2.4043 24 1 7.0364 -10.0518 1.3115 25 1 6.3976 -8.9609 3.3809 26 16 3.0193 -2.1061 1.2168 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 2.1266 -0.8623 4.4556 35 1 4.0986 -4.5325 1.2843 36 1 4.8243 -2.9229 1.5096 37 1 5.8316 -4.3824 1.6620 38 1 5.3473 -4.6921 5.0861 39 1 6.0208 -5.4606 3.6287 40 1 5.6448 -7.4135 5.2951 41 1 4.0293 -7.3793 6.1267 42 1 4.6414 -9.1930 3.9395 43 1 2.9590 -8.6003 4.2876 44 1 5.4173 -8.9972 -0.6432 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086006939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:48 Heat of formation + Delta-G solvation = 72.641563 kcal Electronic energy + Delta-G solvation = -25517.157718 eV Core-core repulsion = 21984.832970 eV Total energy + Delta-G solvation = -3532.324748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16979 -39.36817 -38.05767 -35.52833 -35.16568 -32.38391 -30.52081 -28.84651 -28.05088 -27.38914 -26.67687 -25.58040 -23.56095 -23.11711 -22.05615 -20.63762 -19.15639 -18.38792 -18.13471 -17.20561 -16.49574 -16.23226 -15.63963 -15.31040 -15.04564 -14.70926 -14.41039 -14.33359 -13.98491 -13.55213 -13.29848 -13.12984 -12.99814 -12.76066 -12.47259 -12.40281 -12.31010 -11.89388 -11.53001 -11.46796 -11.42767 -11.35506 -11.20364 -11.11932 -10.90200 -10.49232 -10.35678 -9.83361 -9.80547 -9.49579 -9.44494 -9.27511 -8.92905 -8.70382 -8.29031 -6.99635 -6.02217 -3.42149 0.30483 1.23855 1.66814 2.52596 3.19379 3.30353 3.34880 3.41180 3.44741 3.95954 4.48129 4.61532 4.63355 4.68962 4.83738 4.84367 5.20535 5.23798 5.27265 5.33208 5.34972 5.42071 5.56310 5.61407 5.62975 5.71086 5.75280 5.88177 5.92017 5.96334 6.00069 6.06250 6.12924 6.18578 6.18712 6.34007 6.39540 6.42529 6.73739 7.04949 7.36775 7.55117 7.68372 8.26952 8.28303 8.63241 9.57926 10.33726 11.13942 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.003697 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.036081 B = 7572.091148 C = 8598.825985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.019 4.019 3 C -0.139 4.139 4 C 0.024 3.976 5 N -0.481 5.481 6 C 0.114 3.886 7 C -0.294 4.294 8 C 0.591 3.409 9 O -0.537 6.537 10 N -0.593 5.593 11 C 0.070 3.930 12 C 0.122 3.878 13 C 0.132 3.868 14 H 0.056 0.944 15 C -0.146 4.146 16 C 0.098 3.902 17 N -0.617 5.617 18 C -0.233 4.233 19 H 0.089 0.911 20 C 0.029 3.971 21 N -0.913 5.913 22 Si 0.891 3.109 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.267 1.267 26 S 0.213 5.787 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.183 0.817 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 15.214 1.383 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.198 4.198 4 C -0.249 4.249 5 N -0.194 5.194 6 C -0.044 4.044 7 C -0.419 4.419 8 C 0.377 3.623 9 O -0.416 6.416 10 N -0.324 5.324 11 C -0.075 4.075 12 C -0.001 4.001 13 C 0.025 3.975 14 H 0.073 0.927 15 C -0.185 4.185 16 C -0.026 4.026 17 N -0.346 5.346 18 C -0.360 4.360 19 H 0.106 0.894 20 C -0.171 4.171 21 N -0.557 5.557 22 Si 0.723 3.277 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.192 1.192 26 S 0.473 5.527 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.200 0.800 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.950 14.974 0.846 15.285 hybrid contribution 0.218 -0.847 1.158 1.451 sum -2.732 14.127 2.004 14.527 Atomic orbital electron populations 1.21799 0.92819 1.02522 1.02732 1.19863 0.97009 0.96111 0.91131 1.21797 1.01138 0.94098 1.02751 1.27976 0.99779 1.00169 0.96999 1.66181 1.23636 1.31081 0.98548 1.22071 0.92811 0.89371 1.00162 1.25834 1.13126 1.06218 0.96683 1.16773 0.78926 0.79897 0.86673 1.90794 1.64204 1.73164 1.13470 1.47598 1.47079 1.27639 1.10050 1.22190 1.04562 1.00193 0.80530 1.21930 0.97252 0.86050 0.94883 1.22709 0.96493 0.90303 0.87969 0.92686 1.23586 1.01012 0.97270 0.96646 1.22834 0.97567 0.93356 0.88886 1.46269 1.84564 1.01207 1.02544 1.18628 1.31399 1.07062 0.78932 0.89388 1.25137 0.98115 0.98731 0.95084 1.69750 1.46160 1.33268 1.06480 0.86703 0.79665 0.81804 0.79577 1.21601 1.23082 1.19240 1.84775 1.42043 1.24247 1.01661 0.91485 0.91655 0.92390 0.89194 0.91692 0.91482 0.92541 0.79987 0.89928 0.92181 0.88643 0.90241 0.89118 0.90211 0.92099 0.93709 0.94081 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.17 37.16 0.34 -0.86 16 2 C -0.02 -0.18 3.35 -91.77 -0.31 -0.49 16 3 C -0.14 -1.12 9.17 37.16 0.34 -0.78 16 4 C 0.02 0.29 5.90 -13.29 -0.08 0.22 16 5 N -0.48 -6.57 10.49 -11.50 -0.12 -6.69 16 6 C 0.11 1.64 11.10 -18.85 -0.21 1.43 16 7 C -0.29 -4.50 6.21 -37.10 -0.23 -4.73 16 8 C 0.59 10.34 7.58 -12.85 -0.10 10.24 16 9 O -0.54 -10.54 16.52 5.20 0.09 -10.46 16 10 N -0.59 -10.17 2.89 -183.12 -0.53 -10.70 16 11 C 0.07 1.10 8.25 59.85 0.49 1.59 16 12 C 0.12 2.14 5.31 -4.04 -0.02 2.12 16 13 C 0.13 2.58 4.49 -66.87 -0.30 2.28 16 14 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 15 C -0.15 -2.58 7.86 -25.81 -0.20 -2.78 16 16 C 0.10 2.05 7.50 -2.98 -0.02 2.02 16 17 N -0.62 -14.22 3.15 -170.78 -0.54 -14.76 16 18 C -0.23 -6.10 10.53 -15.06 -0.16 -6.25 16 19 H 0.09 2.38 5.57 -52.48 -0.29 2.09 16 20 C 0.03 0.79 5.50 -17.43 -0.10 0.69 16 21 N -0.91 -26.60 13.97 55.49 0.78 -25.83 16 22 Si 0.89 21.83 24.95 -169.99 -4.24 17.59 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 25 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 26 S 0.21 2.73 18.19 -107.50 -1.96 0.77 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.71 8.12 -51.93 -0.42 0.28 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.08 1.47 5.75 -51.92 -0.30 1.18 16 36 H 0.06 0.81 4.67 -24.72 -0.12 0.69 16 37 H 0.10 1.50 7.84 -51.93 -0.41 1.09 16 38 H 0.08 1.32 7.53 -51.93 -0.39 0.93 16 39 H 0.09 1.62 7.82 -51.93 -0.41 1.21 16 40 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.98 3.84 -51.93 -0.20 0.78 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -31.29 361.72 -7.97 -39.26 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.35 Total: 0.66 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.55 Total: 4.70 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.41 Total: -57.98 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.24 Total: 17.59 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.96 Total: 0.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.29 -7.97 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086006939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.902 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds