Wall clock time and date at job start Tue Mar 31 2020 14:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47168 * 2 1 4 4 H 1.08996 * 109.99777 * 304.89699 * 3 2 1 5 5 C 1.54328 * 109.99052 * 183.85705 * 3 2 1 6 6 H 1.09007 * 110.66585 * 337.04621 * 5 3 2 7 7 N 1.46499 * 110.85350 * 100.19732 * 5 3 2 8 8 C 1.34774 * 120.00572 * 200.14785 * 7 5 3 9 9 O 1.21617 * 119.99548 * 359.97438 * 8 7 5 10 10 C 1.47256 * 120.00377 * 179.97438 * 8 7 5 11 11 N 1.30554 * 125.54414 * 179.97438 * 10 8 7 12 12 C 1.30694 * 115.90602 * 180.02562 * 11 10 8 13 13 C 1.50710 * 122.10953 * 180.02562 * 12 11 10 14 14 C 1.34233 * 115.78754 * 0.02562 * 12 11 10 15 15 C 1.50700 * 125.45647 * 180.02562 * 14 12 11 16 16 S 1.71069 * 109.08876 * 359.72869 * 14 12 11 17 17 C 1.55152 * 103.02277 * 218.66616 * 5 3 2 18 18 C 1.54910 * 101.57974 * 35.30613 * 17 5 3 19 19 N 1.47024 * 109.88250 * 65.98969 * 3 2 1 20 20 C 1.36937 * 125.64711 * 298.39400 * 19 3 2 21 21 H 1.08001 * 119.99698 * 137.66376 * 20 19 3 22 22 C 1.38811 * 120.00174 * 317.66370 * 20 19 3 23 23 N 1.31622 * 120.00134 * 165.29833 * 22 20 19 24 24 Si 1.86795 * 119.99943 * 345.29056 * 22 20 19 25 25 H 1.48500 * 109.46981 * 90.64905 * 24 22 20 26 26 H 1.48504 * 109.47384 * 330.65296 * 24 22 20 27 27 H 1.48495 * 109.47247 * 210.65317 * 24 22 20 28 28 H 1.08994 * 109.47114 * 292.86209 * 1 2 3 29 29 H 1.09003 * 109.46625 * 52.86045 * 1 2 3 30 30 H 1.08999 * 109.47332 * 172.85736 * 1 2 3 31 31 H 1.09000 * 109.47081 * 240.00133 * 2 1 3 32 32 H 1.09003 * 109.46583 * 119.99643 * 2 1 3 33 33 H 0.97005 * 119.99573 * 20.13903 * 7 5 3 34 34 H 1.09004 * 109.46574 * 89.97638 * 13 12 11 35 35 H 1.08990 * 109.47128 * 209.97866 * 13 12 11 36 36 H 1.09005 * 109.46708 * 329.98191 * 13 12 11 37 37 H 1.09005 * 109.46524 * 89.99957 * 15 14 12 38 38 H 1.08999 * 109.47643 * 209.99947 * 15 14 12 39 39 H 1.08996 * 109.47452 * 330.00842 * 15 14 12 40 40 H 1.09004 * 111.00712 * 277.23419 * 17 5 3 41 41 H 1.09000 * 111.03985 * 153.39573 * 17 5 3 42 42 H 1.09004 * 110.36479 * 204.15215 * 18 17 5 43 43 H 1.08997 * 110.46202 * 81.88052 * 18 17 5 44 44 H 0.96993 * 120.00197 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6119 1.9893 -0.8401 5 6 3.5802 1.4576 -0.0976 6 1 3.9972 0.5136 0.2534 7 7 4.0132 1.7352 -1.4693 8 6 5.2579 1.4013 -1.8638 9 8 6.0218 0.8700 -1.0808 10 6 5.6929 1.6799 -3.2428 11 7 6.8689 1.4040 -3.7380 12 6 7.0536 1.7346 -4.9889 13 6 8.3574 1.4799 -5.7007 14 6 6.0089 2.3153 -5.5998 15 6 5.9826 2.7812 -7.0327 16 16 4.7093 2.4341 -4.4937 17 6 3.9792 2.6198 0.8498 18 6 2.9122 2.4916 1.9656 19 7 1.6763 2.1015 1.2630 20 6 0.4009 2.3125 1.7146 21 1 0.1613 2.1437 2.7541 22 6 -0.5840 2.7434 0.8364 23 7 -1.8518 2.6712 1.1826 24 14 -0.1100 3.4258 -0.8366 25 1 -0.0756 2.3222 -1.8296 26 1 1.2314 4.0573 -0.7518 27 1 -1.1089 4.4403 -1.2584 28 1 -0.3633 0.3992 0.9469 29 1 -0.3633 0.6205 -0.8193 30 1 -0.3634 -1.0197 -0.1278 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.4039 2.1593 -2.0937 34 1 8.3306 0.4948 -6.1664 35 1 8.5074 2.2402 -6.4671 36 1 9.1770 1.5205 -4.9831 37 1 5.6349 1.9699 -7.6722 38 1 5.3077 3.6320 -7.1259 39 1 6.9862 3.0786 -7.3366 40 1 3.9008 3.5816 0.3429 41 1 4.9823 2.4719 1.2496 42 1 2.7755 3.4476 2.4712 43 1 3.2005 1.7223 2.6818 44 1 -2.5400 2.9727 0.5692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087834254.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:16 Heat of formation + Delta-G solvation = 32.523937 kcal Electronic energy + Delta-G solvation = -25650.855686 eV Core-core repulsion = 22116.791307 eV Total energy + Delta-G solvation = -3534.064379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53901 -39.60073 -37.94976 -34.34689 -33.61370 -32.59310 -31.98099 -30.23765 -29.56651 -27.48080 -26.34230 -25.16231 -24.18023 -21.84423 -21.31829 -20.68558 -19.83141 -19.07288 -18.63709 -17.33485 -16.77508 -16.16820 -15.79466 -15.25851 -14.76097 -14.62113 -14.47033 -13.99115 -13.49685 -13.41964 -13.40968 -13.34719 -13.18203 -13.02718 -12.63026 -12.37048 -12.36208 -12.06460 -11.90599 -11.49182 -11.37727 -11.24474 -10.99644 -10.67362 -10.55818 -10.46680 -10.12929 -10.08896 -9.78969 -9.75180 -9.74176 -9.51314 -9.05611 -8.83079 -8.41450 -6.78822 -6.08166 -3.55017 -0.02125 0.87579 1.30870 2.10608 2.75231 3.09682 3.20601 3.35718 3.39044 4.11989 4.42749 4.43092 4.57351 4.65134 4.96653 4.98776 5.03878 5.05665 5.22964 5.27661 5.31773 5.38022 5.42025 5.50749 5.55266 5.82006 5.89615 5.90446 5.98253 6.14852 6.18029 6.32303 6.41424 6.61949 6.66601 6.72626 6.78613 6.85157 7.10788 7.21065 7.47934 7.65422 7.93910 8.04357 8.28255 8.78860 9.57290 10.19134 11.06441 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.003759 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.253773 B = 7446.577322 C = 8196.709564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C 0.144 3.856 4 H 0.036 0.964 5 C 0.136 3.864 6 H 0.103 0.897 7 N -0.707 5.707 8 C 0.596 3.404 9 O -0.499 6.499 10 C 0.000 4.000 11 N -0.393 5.393 12 C 0.048 3.952 13 C -0.079 4.079 14 C -0.231 4.231 15 C -0.078 4.078 16 S 0.175 5.825 17 C -0.146 4.146 18 C 0.130 3.870 19 N -0.599 5.599 20 C -0.247 4.247 21 H 0.083 0.917 22 C 0.049 3.951 23 N -0.898 5.898 24 Si 0.876 3.124 25 H -0.278 1.278 26 H -0.270 1.270 27 H -0.301 1.301 28 H 0.107 0.893 29 H 0.041 0.959 30 H 0.026 0.974 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.396 0.604 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.031 0.969 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.593 0.079 -16.001 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.038 3.962 4 H 0.054 0.946 5 C 0.032 3.968 6 H 0.121 0.879 7 N -0.359 5.359 8 C 0.377 3.623 9 O -0.373 6.373 10 C -0.276 4.276 11 N -0.109 5.109 12 C -0.090 4.090 13 C -0.138 4.138 14 C -0.354 4.354 15 C -0.136 4.136 16 S 0.431 5.569 17 C -0.186 4.186 18 C 0.005 3.995 19 N -0.326 5.326 20 C -0.375 4.375 21 H 0.100 0.900 22 C -0.152 4.152 23 N -0.539 5.539 24 Si 0.706 3.294 25 H -0.206 1.206 26 H -0.196 1.196 27 H -0.229 1.229 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.201 -0.133 -15.050 20.693 hybrid contribution 0.558 0.482 -1.938 2.073 sum 14.759 0.349 -16.987 22.506 Atomic orbital electron populations 1.22102 0.94606 0.98897 1.05882 1.21829 0.97839 0.96329 0.99814 1.21415 0.89469 0.93417 0.91926 0.94645 1.22231 0.95798 0.99668 0.79106 0.87925 1.45896 1.13186 1.62033 1.14795 1.16627 0.82435 0.79425 0.83833 1.90842 1.52774 1.41356 1.52343 1.27385 0.93561 1.07340 0.99328 1.66486 1.17926 1.15670 1.10858 1.20250 0.98312 1.01100 0.89319 1.20408 0.91627 1.02387 0.99353 1.25422 0.97978 1.08437 1.03560 1.20330 1.03907 1.01572 0.87830 1.83990 1.15653 1.54370 1.02915 1.23206 0.99531 0.97955 0.97879 1.21783 0.85883 0.98338 0.93501 1.44533 1.02000 1.65773 1.20253 1.18374 0.82149 1.40394 0.96536 0.89990 1.25511 0.95162 0.96518 0.98057 1.69777 0.99106 1.48050 1.36921 0.87044 0.77916 0.78915 0.85479 1.20571 1.19564 1.22929 0.87408 0.93980 0.95510 0.94220 0.92179 0.76897 0.90506 0.90584 0.90362 0.90004 0.90736 0.89780 0.91279 0.90949 0.92734 0.95079 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.30 37.16 0.31 -3.11 16 2 C -0.12 -2.33 5.47 -26.73 -0.15 -2.48 16 3 C 0.14 2.92 2.16 -66.95 -0.14 2.78 16 4 H 0.04 0.78 3.34 -51.93 -0.17 0.60 16 5 C 0.14 2.40 2.76 -66.10 -0.18 2.22 16 6 H 0.10 1.83 7.40 -51.93 -0.38 1.45 16 7 N -0.71 -11.30 5.20 -53.16 -0.28 -11.58 16 8 C 0.60 9.90 7.81 -12.60 -0.10 9.80 16 9 O -0.50 -9.79 16.79 5.26 0.09 -9.71 16 10 C 0.00 0.01 7.46 -14.43 -0.11 -0.10 16 11 N -0.39 -5.86 10.57 -7.69 -0.08 -5.95 16 12 C 0.05 0.55 6.68 -84.48 -0.56 -0.02 16 13 C -0.08 -0.62 10.02 36.01 0.36 -0.26 16 14 C -0.23 -2.26 6.36 -35.72 -0.23 -2.49 16 15 C -0.08 -0.46 10.04 36.01 0.36 -0.10 16 16 S 0.17 1.93 22.28 -107.50 -2.39 -0.46 16 17 C -0.15 -2.53 6.77 -24.58 -0.17 -2.70 16 18 C 0.13 2.52 7.23 -2.53 -0.02 2.50 16 19 N -0.60 -13.52 2.56 -162.57 -0.42 -13.94 16 20 C -0.25 -6.46 8.23 -15.06 -0.12 -6.58 16 21 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 22 C 0.05 1.32 3.61 -17.43 -0.06 1.26 16 23 N -0.90 -25.62 13.97 55.49 0.78 -24.85 16 24 Si 0.88 21.05 23.28 -169.99 -3.96 17.09 16 25 H -0.28 -6.40 6.09 56.52 0.34 -6.06 16 26 H -0.27 -6.34 7.10 56.52 0.40 -5.94 16 27 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 28 H 0.11 2.68 5.13 -51.93 -0.27 2.42 16 29 H 0.04 0.95 5.51 -51.93 -0.29 0.66 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.40 5.81 7.46 -40.82 -0.30 5.50 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.41 6.60 -51.93 -0.34 0.07 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.37 6.65 -51.93 -0.35 0.03 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -31.02 355.87 -8.08 -39.10 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.37 Total: 4.21 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.81 Total: 0.72 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.00 Total: -56.31 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -3.96 Total: 17.09 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.39 Total: -0.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.02 -8.08 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087834254.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.621 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds