Wall clock time and date at job start Tue Mar 31 2020 13:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47442 * 2 1 4 4 C 1.50698 * 109.47413 * 239.99845 * 2 1 3 5 5 S 1.70944 * 125.58376 * 54.71300 * 4 2 1 6 6 C 1.70769 * 91.12833 * 179.97438 * 5 4 2 7 7 N 1.28642 * 110.56442 * 0.02562 * 6 5 4 8 8 C 1.33566 * 115.75997 * 359.73421 * 7 6 5 9 9 C 1.47271 * 123.13761 * 180.30043 * 8 7 6 10 10 O 1.21635 * 119.99507 * 185.60837 * 9 8 7 11 11 N 1.34773 * 119.99993 * 5.60425 * 9 8 7 12 12 C 1.46507 * 119.99785 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47092 * 180.02562 * 12 11 9 14 14 C 1.53782 * 113.61744 * 274.13673 * 13 12 11 15 15 C 1.53953 * 87.02097 * 220.05100 * 14 13 12 16 16 N 1.46506 * 113.53092 * 270.80692 * 15 14 13 17 17 C 1.36933 * 119.99937 * 252.49057 * 16 15 14 18 18 H 1.08002 * 120.00369 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00036 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00202 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47400 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47308 * 119.99878 * 21 19 17 24 24 H 1.48502 * 109.47278 * 240.00185 * 21 19 17 25 25 C 1.53777 * 87.11346 * 25.35883 * 15 14 13 26 26 H 1.08999 * 109.46664 * 59.99737 * 1 2 3 27 27 H 1.09002 * 109.47017 * 300.00115 * 1 2 3 28 28 H 1.08993 * 109.47455 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47120 * 119.99984 * 2 1 3 30 30 H 1.09002 * 109.47109 * 59.99940 * 3 2 1 31 31 H 1.08998 * 109.47217 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47405 * 299.99809 * 3 2 1 33 33 H 1.08006 * 124.72029 * 179.97438 * 6 5 4 34 34 H 0.96992 * 120.00260 * 0.02562 * 11 9 8 35 35 H 1.08994 * 109.46856 * 300.00195 * 12 11 9 36 36 H 1.08998 * 109.46736 * 60.00337 * 12 11 9 37 37 H 1.08999 * 112.85215 * 45.33101 * 13 12 11 38 38 H 1.09011 * 113.60990 * 334.57057 * 14 13 12 39 39 H 1.08996 * 113.61718 * 105.46489 * 14 13 12 40 40 H 1.09002 * 113.74119 * 139.94403 * 15 14 13 41 41 H 0.96998 * 119.99652 * 72.50586 * 16 15 14 42 42 H 0.96999 * 120.00115 * 179.97438 * 20 19 17 43 43 H 1.08993 * 113.61587 * 220.08965 * 25 15 14 44 44 H 1.08996 * 113.61143 * 89.18617 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 16 1.6069 -0.3305 -2.8418 6 6 2.6031 -1.5837 -3.4361 7 7 3.1800 -2.2009 -2.4659 8 6 2.8975 -1.7494 -1.2410 9 6 3.4721 -2.3312 -0.0162 10 8 3.0984 -1.9434 1.0744 11 7 4.4119 -3.2932 -0.1038 12 6 4.9839 -3.8715 1.1147 13 6 6.0198 -4.9326 0.7379 14 6 5.4145 -6.3249 0.4929 15 6 6.6396 -6.8984 1.2280 16 7 7.7730 -7.1811 0.3436 17 6 8.1011 -8.4762 0.0438 18 1 7.5242 -9.2895 0.4589 19 6 9.1752 -8.7441 -0.7937 20 7 9.8786 -7.7531 -1.2992 21 14 9.6224 -10.5108 -1.2033 22 1 8.6830 -11.4318 -0.5142 23 1 9.5299 -10.7174 -2.6710 24 1 11.0093 -10.7881 -0.7509 25 6 6.7437 -5.5442 1.9490 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 2.7304 -1.8253 -4.4811 34 1 4.7101 -3.6021 -0.9735 35 1 5.4643 -3.0865 1.6985 36 1 4.1914 -4.3307 1.7056 37 1 6.6937 -4.6041 -0.0533 38 1 4.4735 -6.4903 1.0177 39 1 5.3672 -6.6012 -0.5603 40 1 6.4034 -7.7298 1.8922 41 1 8.2910 -6.4507 -0.0293 42 1 10.6295 -7.9402 -1.8842 43 1 7.7679 -5.1913 2.0696 44 1 6.1668 -5.4958 2.8726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091319620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:35 Heat of formation + Delta-G solvation = 26.917513 kcal Electronic energy + Delta-G solvation = -24390.353164 eV Core-core repulsion = 20856.045672 eV Total energy + Delta-G solvation = -3534.307492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80005 -39.06429 -38.21432 -36.12379 -34.56156 -33.17189 -30.43976 -29.93696 -27.71519 -27.49276 -25.65346 -25.03091 -23.76973 -22.70943 -21.80557 -21.46502 -19.95853 -18.43181 -18.13236 -17.38152 -16.81327 -16.04556 -15.70789 -15.54459 -14.95172 -14.60403 -14.51945 -14.23740 -14.03236 -14.00719 -13.54967 -13.37995 -13.14082 -12.88338 -12.57058 -12.34855 -12.24815 -11.90306 -11.80728 -11.56752 -11.46895 -11.34018 -11.03054 -10.84969 -10.46639 -10.13388 -10.10049 -10.00537 -9.74136 -9.70165 -9.68143 -9.44156 -9.29662 -8.92935 -8.86424 -6.98907 -5.79946 -3.08852 0.26220 0.93404 1.34993 1.79233 3.23328 3.25357 3.42081 3.47929 3.50109 3.89869 4.34073 4.55841 4.56510 4.76748 4.82084 5.02407 5.08616 5.12284 5.22950 5.26034 5.26660 5.46421 5.47341 5.55491 5.61666 5.64911 5.71888 5.75545 5.87249 5.90426 5.95704 6.06711 6.15583 6.23163 6.39181 6.48522 6.61139 6.77788 6.91599 7.06669 7.10344 7.57582 7.70274 8.15985 8.39230 9.49914 10.07746 10.41958 11.42603 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021626 B = 0.002329 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.440558 B =12019.985159 C =12860.806322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.142 4.142 4 C -0.169 4.169 5 S 0.195 5.805 6 C -0.004 4.004 7 N -0.435 5.435 8 C -0.005 4.005 9 C 0.593 3.407 10 O -0.538 6.538 11 N -0.703 5.703 12 C 0.130 3.870 13 C -0.120 4.120 14 C -0.168 4.168 15 C 0.168 3.832 16 N -0.706 5.706 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.147 4.147 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.136 0.864 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.205 0.795 34 H 0.412 0.588 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.597 19.439 -1.332 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.293 4.293 5 S 0.451 5.549 6 C -0.304 4.304 7 N -0.149 5.149 8 C -0.140 4.140 9 C 0.377 3.623 10 O -0.417 6.417 11 N -0.353 5.353 12 C 0.007 3.993 13 C -0.139 4.139 14 C -0.209 4.209 15 C 0.055 3.945 16 N -0.344 5.344 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.187 4.187 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.221 0.779 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.028 19.710 -1.201 28.125 hybrid contribution 1.040 -1.263 -0.441 1.694 sum -18.988 18.446 -1.642 26.524 Atomic orbital electron populations 1.21903 0.93785 1.02307 1.02125 1.20311 0.95912 0.95944 0.95078 1.21873 1.01592 0.94392 1.02080 1.25681 1.01576 1.00664 1.01353 1.82798 1.43132 1.32804 0.96178 1.28351 1.00288 0.98101 1.03686 1.66967 1.22513 1.27385 0.98030 1.20384 1.02526 0.98599 0.92457 1.17040 0.79341 0.79435 0.86495 1.90643 1.61678 1.61861 1.27497 1.45922 1.39836 1.38153 1.11350 1.21552 0.95956 0.95803 0.85966 1.22714 0.97181 0.93911 1.00069 1.23916 0.99334 0.95510 1.02183 1.21091 0.88235 0.93578 0.91569 1.42184 1.31962 1.05795 1.54503 1.19338 1.10210 0.84337 1.23297 0.90939 1.24769 0.98425 0.97454 1.00329 1.69674 1.21788 1.29673 1.36920 0.86099 0.77948 0.84256 0.77775 1.20497 1.21855 1.21839 1.23436 1.00119 0.98871 0.96236 0.92828 0.91455 0.92272 0.84650 0.91489 0.92325 0.92840 0.77851 0.75236 0.91591 0.91334 0.88845 0.91436 0.91454 0.91937 0.78105 0.93502 0.91293 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.05 37.16 0.34 -0.77 16 2 C -0.05 -0.50 3.12 -91.77 -0.29 -0.79 16 3 C -0.14 -1.13 9.16 37.16 0.34 -0.79 16 4 C -0.17 -1.78 5.03 -35.39 -0.18 -1.96 16 5 S 0.19 1.44 22.44 -107.50 -2.41 -0.98 16 6 C 0.00 -0.04 12.17 51.43 0.63 0.59 16 7 N -0.44 -5.28 10.14 -12.36 -0.13 -5.40 16 8 C -0.01 -0.07 6.70 -84.52 -0.57 -0.63 16 9 C 0.59 8.68 7.79 -12.59 -0.10 8.58 16 10 O -0.54 -8.66 13.86 5.25 0.07 -8.58 16 11 N -0.70 -9.92 5.55 -61.43 -0.34 -10.26 16 12 C 0.13 1.83 5.50 -4.04 -0.02 1.81 16 13 C -0.12 -1.87 3.62 -89.81 -0.33 -2.19 16 14 C -0.17 -2.90 7.44 -25.83 -0.19 -3.09 16 15 C 0.17 3.31 4.57 -67.03 -0.31 3.01 16 16 N -0.71 -17.58 5.31 -52.55 -0.28 -17.86 16 17 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C -0.15 -2.39 7.39 -25.92 -0.19 -2.58 16 26 H 0.05 0.34 7.84 -51.93 -0.41 -0.06 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.14 1.66 4.95 -51.93 -0.26 1.41 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.20 1.07 8.06 -52.48 -0.42 0.64 16 34 H 0.41 5.73 8.00 -40.82 -0.33 5.40 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 37 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.07 1.05 7.92 -51.92 -0.41 0.64 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.38 10.15 7.90 -40.82 -0.32 9.82 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -31.89 376.38 -9.57 -41.46 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.75 Total: 12.08 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.11 Total: -6.13 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.02 Total: -60.85 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.41 Total: -0.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.89 -9.57 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091319620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.380 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds