Wall clock time and date at job start Tue Mar 31 2020 14:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09001 * 109.46979 * 305.00169 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00349 * 3 2 1 6 6 H 1.07995 * 119.99741 * 239.99774 * 5 3 2 7 7 C 1.37875 * 119.99973 * 59.99939 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47297 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47136 * 120.00166 * 9 7 5 12 12 H 1.48499 * 109.47166 * 239.99464 * 9 7 5 13 13 N 1.46499 * 109.47288 * 64.99970 * 3 2 1 14 14 C 1.34777 * 120.00199 * 275.00460 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.46842 * 299.72137 * 16 14 13 18 18 C 1.53003 * 109.46915 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47301 * 60.00084 * 18 17 16 20 20 O 1.42904 * 109.47117 * 59.99855 * 19 18 17 21 21 C 1.52994 * 109.47118 * 179.97438 * 19 18 17 22 22 F 1.39901 * 109.46918 * 180.02562 * 21 19 18 23 23 F 1.39898 * 109.47221 * 299.99855 * 21 19 18 24 24 F 1.39901 * 109.47345 * 60.00130 * 21 19 18 25 25 C 1.52997 * 109.46762 * 300.00050 * 19 18 17 26 26 C 1.52994 * 109.47347 * 60.00088 * 25 19 18 27 27 H 1.09001 * 109.46737 * 299.99859 * 1 2 3 28 28 H 1.08994 * 109.47050 * 59.99696 * 1 2 3 29 29 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46737 * 240.00141 * 2 1 3 31 31 H 1.08994 * 109.47050 * 120.00304 * 2 1 3 32 32 H 0.97002 * 120.00028 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99484 * 94.99557 * 13 3 2 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.09002 * 109.47575 * 299.99754 * 17 16 14 36 36 H 1.09001 * 109.47551 * 59.99933 * 17 16 14 37 37 H 1.09000 * 109.46939 * 299.99421 * 18 17 16 38 38 H 1.09004 * 109.47038 * 180.02562 * 18 17 16 39 39 H 0.96697 * 113.99468 * 60.00345 * 20 19 18 40 40 H 1.09003 * 109.47498 * 299.99643 * 25 19 18 41 41 H 1.09001 * 109.47245 * 180.02562 * 25 19 18 42 42 H 1.09004 * 109.47131 * 179.97438 * 26 25 19 43 43 H 1.09000 * 109.47504 * 60.00063 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5988 1.5461 -0.1944 11 1 6.4971 -0.5176 -1.4632 12 1 6.3990 1.6165 -2.6105 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0390 3.3436 2.6526 17 6 0.0789 2.3301 3.7981 18 6 -0.3240 3.0196 5.1032 19 6 -1.7411 3.5802 4.9674 20 8 -2.6510 2.5135 4.6916 21 6 -2.1442 4.2691 6.2727 22 9 -3.4401 4.7812 6.1488 23 9 -2.1078 3.3420 7.3198 24 9 -1.2534 5.3134 6.5434 25 6 -1.7809 4.5936 3.8219 26 6 -1.3780 3.9043 2.5169 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0611 -2.9500 33 1 2.2721 2.1230 1.9977 34 1 0.7334 4.1570 2.8627 35 1 -0.6155 1.5167 3.5879 36 1 1.0883 1.9303 3.8945 37 1 0.3701 3.8332 5.3136 38 1 -0.2952 2.2976 5.9194 39 1 -2.6781 1.8325 5.3775 40 1 -1.0868 5.4074 4.0323 41 1 -2.7903 4.9935 3.7254 42 1 -1.4069 4.6262 1.7007 43 1 -2.0721 3.0906 2.3064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181736062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:54 Heat of formation + Delta-G solvation = -266.983908 kcal Electronic energy + Delta-G solvation = -29260.796604 eV Core-core repulsion = 24696.842228 eV Total energy + Delta-G solvation = -4563.954376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.44522 -47.96886 -47.88378 -40.16225 -38.56823 -35.55988 -34.82872 -32.46154 -31.47136 -31.01031 -30.49840 -27.19760 -26.13057 -23.33222 -23.06252 -22.47814 -20.72941 -19.85588 -19.26382 -18.74667 -18.61325 -18.57590 -17.24391 -16.60775 -15.74760 -15.59102 -15.23294 -14.79777 -14.73558 -14.50719 -14.36913 -14.25764 -14.09613 -14.06951 -14.05266 -13.55166 -13.40996 -13.17226 -12.74201 -12.68447 -12.45629 -12.18695 -11.87935 -11.59335 -11.47386 -11.27910 -11.23398 -10.97098 -10.84688 -10.66040 -10.56740 -10.31010 -10.28901 -10.14903 -9.62364 -9.04140 -8.87669 -8.50325 -7.80059 -6.13324 -4.22716 2.32612 3.22158 3.30324 3.31916 3.32565 3.37197 3.41208 3.60278 3.95214 4.11760 4.29686 4.36903 4.38148 4.86009 4.92054 4.97302 5.12161 5.18274 5.22225 5.35590 5.49287 5.59436 5.65346 5.77396 6.00434 6.03088 6.22399 6.39753 6.44377 6.47876 6.67134 6.98353 7.04375 7.20807 7.37763 7.47761 7.61927 7.73722 7.90529 8.18385 8.68992 8.78116 9.16669 9.45244 10.91921 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.025770 B = 0.002953 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.284110 B = 9478.834562 C = 9853.797575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.547 6.547 16 C -0.113 4.113 17 C -0.101 4.101 18 C -0.147 4.147 19 C 0.103 3.897 20 O -0.521 6.521 21 C 0.421 3.579 22 F -0.177 7.177 23 F -0.186 7.186 24 F -0.179 7.179 25 C -0.110 4.110 26 C -0.089 4.089 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.383 0.617 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.000 6.133 17.655 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.425 6.425 16 C -0.134 4.134 17 C -0.139 4.139 18 C -0.184 4.184 19 C 0.060 3.940 20 O -0.326 6.326 21 C 0.367 3.633 22 F -0.158 7.158 23 F -0.167 7.167 24 F -0.160 7.160 25 C -0.148 4.148 26 C -0.127 4.127 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.637 6.360 16.262 19.944 hybrid contribution 1.352 -0.232 1.175 1.807 sum -8.285 6.128 17.437 20.255 Atomic orbital electron populations 1.21835 0.98320 0.97957 1.01284 1.21923 0.92616 0.99853 1.02165 1.18766 0.94107 0.89173 0.81169 0.93396 1.21274 0.90810 1.38882 1.06229 0.92112 1.24887 0.98538 0.94852 0.95420 1.69904 1.35002 1.37672 1.09334 0.86424 0.84978 0.77762 0.78104 1.19771 1.20901 1.20902 1.46502 1.14673 1.56053 1.18372 1.20213 0.82683 0.79356 0.88724 1.90671 1.51444 1.59851 1.40575 1.21420 0.98840 0.98800 0.94369 1.21399 1.02843 0.98018 0.91622 1.22279 0.93969 1.02050 1.00146 1.22464 0.91530 0.89820 0.90200 1.86742 1.62651 1.34206 1.49048 1.21772 0.75330 0.78020 0.88209 1.93196 1.38873 1.87700 1.96045 1.93163 1.96225 1.65840 1.61504 1.93180 1.68280 1.59746 1.94809 1.21686 1.03886 0.95771 0.93420 1.21194 0.95277 1.01181 0.95001 0.94168 0.93214 0.95977 0.88405 0.95144 0.92636 0.78135 0.89062 0.90242 0.90340 0.89366 0.90087 0.76770 0.89366 0.89767 0.90354 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.43 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.78 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 N -0.71 -13.81 4.92 -54.93 -0.27 -14.08 16 14 C 0.51 9.27 5.72 -10.98 -0.06 9.20 16 15 O -0.55 -12.13 13.12 5.55 0.07 -12.06 16 16 C -0.11 -1.45 2.53 -91.77 -0.23 -1.68 16 17 C -0.10 -1.07 4.96 -26.73 -0.13 -1.20 16 18 C -0.15 -1.22 4.67 -26.73 -0.12 -1.34 16 19 C 0.10 0.94 0.48 -90.63 -0.04 0.90 16 20 O -0.52 -4.92 11.57 -35.23 -0.41 -5.33 16 21 C 0.42 3.95 2.38 37.15 0.09 4.04 16 22 F -0.18 -1.87 16.74 2.25 0.04 -1.84 16 23 F -0.19 -1.70 16.41 2.25 0.04 -1.66 16 24 F -0.18 -1.73 16.28 2.25 0.04 -1.69 16 25 C -0.11 -1.08 4.70 -26.74 -0.13 -1.21 16 26 C -0.09 -1.11 4.35 -26.74 -0.12 -1.23 16 27 H 0.04 0.85 5.65 -51.93 -0.29 0.55 16 28 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.39 6.51 7.97 -40.82 -0.33 6.19 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 36 H 0.08 0.79 7.57 -51.93 -0.39 0.40 16 37 H 0.09 0.67 7.80 -51.93 -0.41 0.26 16 38 H 0.08 0.56 7.80 -51.93 -0.41 0.16 16 39 H 0.38 2.31 8.69 45.56 0.40 2.71 16 40 H 0.09 0.75 7.80 -51.93 -0.41 0.34 16 41 H 0.08 0.82 7.80 -51.93 -0.41 0.41 16 42 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 43 H 0.08 1.22 7.64 -51.93 -0.40 0.82 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -30.11 347.56 -6.15 -36.27 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.37 Total: 8.00 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.13 Total: -4.35 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.36 Total: -37.86 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.33 Total: -17.39 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.11 Total: -5.18 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.11 -6.15 -36.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181736062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.718 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds