Wall clock time and date at job start Tue Mar 31 2020 14:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09001 * 109.46979 * 305.00169 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00349 * 3 2 1 6 6 H 1.07995 * 119.99741 * 239.99774 * 5 3 2 7 7 C 1.37875 * 119.99973 * 59.99939 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47297 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47136 * 120.00166 * 9 7 5 12 12 H 1.48499 * 109.47166 * 239.99464 * 9 7 5 13 13 N 1.46499 * 109.47288 * 64.99970 * 3 2 1 14 14 C 1.34777 * 120.00199 * 275.00460 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.46842 * 299.72137 * 16 14 13 18 18 C 1.53003 * 109.46915 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47301 * 60.00084 * 18 17 16 20 20 O 1.42904 * 109.47117 * 59.99855 * 19 18 17 21 21 C 1.52994 * 109.47118 * 179.97438 * 19 18 17 22 22 F 1.39901 * 109.46918 * 180.02562 * 21 19 18 23 23 F 1.39898 * 109.47221 * 299.99855 * 21 19 18 24 24 F 1.39901 * 109.47345 * 60.00130 * 21 19 18 25 25 C 1.52997 * 109.46762 * 300.00050 * 19 18 17 26 26 C 1.52994 * 109.47347 * 60.00088 * 25 19 18 27 27 H 1.09001 * 109.46737 * 299.99859 * 1 2 3 28 28 H 1.08994 * 109.47050 * 59.99696 * 1 2 3 29 29 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46737 * 240.00141 * 2 1 3 31 31 H 1.08994 * 109.47050 * 120.00304 * 2 1 3 32 32 H 0.97002 * 120.00028 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99484 * 94.99557 * 13 3 2 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.09002 * 109.47575 * 299.99754 * 17 16 14 36 36 H 1.09001 * 109.47551 * 59.99933 * 17 16 14 37 37 H 1.09000 * 109.46939 * 299.99421 * 18 17 16 38 38 H 1.09004 * 109.47038 * 180.02562 * 18 17 16 39 39 H 0.96697 * 113.99468 * 60.00345 * 20 19 18 40 40 H 1.09003 * 109.47498 * 299.99643 * 25 19 18 41 41 H 1.09001 * 109.47245 * 180.02562 * 25 19 18 42 42 H 1.09004 * 109.47131 * 179.97438 * 26 25 19 43 43 H 1.09000 * 109.47504 * 60.00063 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5988 1.5461 -0.1944 11 1 6.4971 -0.5176 -1.4632 12 1 6.3990 1.6165 -2.6105 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0390 3.3436 2.6526 17 6 0.0789 2.3301 3.7981 18 6 -0.3240 3.0196 5.1032 19 6 -1.7411 3.5802 4.9674 20 8 -2.6510 2.5135 4.6916 21 6 -2.1442 4.2691 6.2727 22 9 -3.4401 4.7812 6.1488 23 9 -2.1078 3.3420 7.3198 24 9 -1.2534 5.3134 6.5434 25 6 -1.7809 4.5936 3.8219 26 6 -1.3780 3.9043 2.5169 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0611 -2.9500 33 1 2.2721 2.1230 1.9977 34 1 0.7334 4.1570 2.8627 35 1 -0.6155 1.5167 3.5879 36 1 1.0883 1.9303 3.8945 37 1 0.3701 3.8332 5.3136 38 1 -0.2952 2.2976 5.9194 39 1 -2.6781 1.8325 5.3775 40 1 -1.0868 5.4074 4.0323 41 1 -2.7903 4.9935 3.7254 42 1 -1.4069 4.6262 1.7007 43 1 -2.0721 3.0906 2.3064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181736062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:54 Heat of formation + Delta-G solvation = -287.542266 kcal Electronic energy + Delta-G solvation = -29261.688081 eV Core-core repulsion = 24696.842228 eV Total energy + Delta-G solvation = -4564.845853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.16999 -48.67753 -48.63246 -41.29730 -39.77082 -37.02247 -36.09927 -34.27301 -32.95732 -31.88740 -31.74419 -28.96992 -27.16838 -25.04470 -23.91577 -23.67661 -21.96448 -21.22194 -20.76579 -19.49267 -19.36474 -19.30794 -18.87294 -17.49707 -17.39912 -17.06473 -16.37135 -16.12327 -15.91137 -15.51003 -15.38997 -15.10170 -14.91210 -14.86331 -14.80060 -14.79174 -14.61230 -14.44755 -14.14188 -13.81486 -13.53874 -13.30455 -13.20609 -13.10560 -13.04228 -12.84396 -12.68141 -12.49486 -12.13449 -12.10514 -11.98976 -11.60931 -11.52458 -11.43702 -11.09439 -10.98630 -10.56653 -10.36702 -9.54789 -8.13965 -6.31045 1.44849 1.46511 1.57756 1.60184 1.95572 2.38146 2.59917 2.69035 2.75775 2.88258 3.15677 3.30987 3.54519 3.63552 3.91179 3.99175 4.07604 4.21822 4.42001 4.44236 4.51706 4.60019 4.66964 4.72309 4.78907 4.83977 4.93458 5.08785 5.10878 5.12852 5.28313 5.29263 5.45002 5.47636 5.59807 5.69154 5.83618 5.98175 6.21049 6.46944 6.78752 7.08845 7.37102 7.69412 8.91379 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.025770 B = 0.002953 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.284110 B = 9478.834562 C = 9853.797575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.704 5.704 14 C 0.501 3.499 15 O -0.590 6.590 16 C -0.101 4.101 17 C -0.096 4.096 18 C -0.140 4.140 19 C 0.106 3.894 20 O -0.536 6.536 21 C 0.426 3.574 22 F -0.186 7.186 23 F -0.183 7.183 24 F -0.178 7.178 25 C -0.107 4.107 26 C -0.083 4.083 27 H 0.047 0.953 28 H 0.022 0.978 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.403 0.597 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.398 0.602 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 6.581 20.427 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.353 5.353 14 C 0.288 3.712 15 O -0.472 6.472 16 C -0.123 4.123 17 C -0.134 4.134 18 C -0.177 4.177 19 C 0.063 3.937 20 O -0.345 6.345 21 C 0.371 3.629 22 F -0.167 7.167 23 F -0.164 7.164 24 F -0.160 7.160 25 C -0.145 4.145 26 C -0.121 4.121 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.249 0.751 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.523 6.814 19.092 21.991 hybrid contribution 0.933 -0.360 0.285 1.040 sum -7.590 6.454 19.377 21.788 Atomic orbital electron populations 1.21667 0.97065 0.98935 1.00262 1.21766 0.93621 0.99302 1.01172 1.18319 0.93476 0.89113 0.81707 0.98746 1.21631 0.91558 1.38566 1.06549 0.90940 1.25766 1.03155 0.94518 0.95131 1.70063 1.36929 1.38559 1.09903 0.85353 0.79375 0.77741 0.78189 1.18277 1.20605 1.21241 1.46254 1.15700 1.56107 1.17267 1.21198 0.81485 0.78384 0.90130 1.90658 1.52528 1.61244 1.42742 1.21419 0.99345 0.99594 0.91899 1.21361 1.03257 0.97069 0.91716 1.22265 0.93414 1.02880 0.99159 1.22420 0.92094 0.89587 0.89630 1.86727 1.62890 1.34774 1.50070 1.21726 0.74933 0.77941 0.88256 1.93182 1.39595 1.87846 1.96097 1.93171 1.96181 1.65694 1.61377 1.93183 1.68176 1.59792 1.94825 1.21660 1.04372 0.96284 0.92138 1.21075 0.94570 1.00190 0.96301 0.93441 0.95923 0.93861 0.91345 0.93953 0.92733 0.76240 0.86428 0.91595 0.89271 0.87736 0.88036 0.75124 0.87396 0.89841 0.91755 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.52 71.98 0.61 -4.84 16 2 C -0.12 -5.80 5.45 30.59 0.17 -5.63 16 3 C 0.28 13.87 2.24 44.24 0.10 13.97 16 4 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 5 C -0.54 -28.11 8.73 25.60 0.22 -27.89 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.07 11.29 21.45 0.24 -51.82 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.44 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 13 N -0.70 -27.23 4.92 -446.10 -2.19 -29.42 16 14 C 0.50 18.34 5.72 87.66 0.50 18.84 16 15 O -0.59 -27.16 13.12 -3.04 -0.04 -27.20 16 16 C -0.10 -2.44 2.53 -11.54 -0.03 -2.47 16 17 C -0.10 -1.79 4.96 30.59 0.15 -1.63 16 18 C -0.14 -1.80 4.67 30.59 0.14 -1.66 16 19 C 0.11 1.66 0.48 -10.80 -0.01 1.65 16 20 O -0.54 -9.17 11.57 -148.98 -1.72 -10.90 16 21 C 0.43 6.83 2.38 71.98 0.17 7.00 16 22 F -0.19 -3.58 16.74 44.97 0.75 -2.83 16 23 F -0.18 -2.80 16.41 44.97 0.74 -2.07 16 24 F -0.18 -2.88 16.28 44.97 0.73 -2.15 16 25 C -0.11 -1.89 4.70 30.59 0.14 -1.75 16 26 C -0.08 -2.03 4.35 30.59 0.13 -1.90 16 27 H 0.05 2.02 5.65 -2.39 -0.01 2.01 16 28 H 0.02 1.09 7.85 -2.39 -0.02 1.07 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 3.75 5.95 -2.39 -0.01 3.74 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.40 12.88 7.97 -92.71 -0.74 12.14 16 34 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16 36 H 0.09 1.50 7.57 -2.39 -0.02 1.48 16 37 H 0.10 1.09 7.80 -2.39 -0.02 1.07 16 38 H 0.10 0.97 7.80 -2.38 -0.02 0.96 16 39 H 0.40 3.94 8.69 -74.06 -0.64 3.29 16 40 H 0.11 1.49 7.80 -2.39 -0.02 1.47 16 41 H 0.08 1.50 7.80 -2.39 -0.02 1.49 16 42 H 0.06 1.72 8.10 -2.38 -0.02 1.70 16 43 H 0.06 1.73 7.64 -2.39 -0.02 1.71 16 Total: -1.00 -67.48 347.56 2.97 -64.51 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.33 Total: 23.54 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 2.76 Total: -5.11 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.95 Total: -81.24 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.76 Total: -38.10 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 2.22 Total: -7.04 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -67.48 2.97 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181736062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.032 kcal (2) G-P(sol) polarization free energy of solvation -67.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -290.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds