Wall clock time and date at job start Tue Mar 31 2020 14:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 117.00195 * 2 1 4 4 C 1.38232 * 119.97430 * 359.97438 * 3 2 1 5 5 C 1.39699 * 119.94815 * 180.02562 * 4 3 2 6 6 C 1.47607 * 120.05932 * 180.02562 * 5 4 3 7 7 O 1.21591 * 119.99821 * 325.63418 * 6 5 4 8 8 N 1.34768 * 120.00465 * 145.63707 * 6 5 4 9 9 C 1.46502 * 119.99889 * 6.07494 * 8 6 5 10 10 C 1.46509 * 120.00225 * 186.07719 * 8 6 5 11 11 H 1.08991 * 109.46962 * 359.97438 * 10 8 6 12 12 C 1.52995 * 109.46848 * 239.99711 * 10 8 6 13 13 C 1.50702 * 109.47015 * 119.99736 * 10 8 6 14 14 H 1.08004 * 119.99994 * 30.94504 * 13 10 8 15 15 C 1.37873 * 119.99847 * 210.93308 * 13 10 8 16 16 N 1.31521 * 119.99874 * 169.26193 * 15 13 10 17 17 Si 1.86795 * 120.00137 * 349.27027 * 15 13 10 18 18 H 1.48505 * 109.47208 * 93.48074 * 17 15 13 19 19 H 1.48500 * 109.47195 * 213.48094 * 17 15 13 20 20 H 1.48500 * 109.47255 * 333.48338 * 17 15 13 21 21 C 1.39701 * 119.88600 * 0.27209 * 5 4 3 22 22 C 1.38233 * 119.94222 * 359.46970 * 21 5 4 23 23 O 1.36001 * 119.97171 * 180.25451 * 22 21 5 24 24 C 1.42900 * 117.00400 * 0.28101 * 23 22 21 25 25 C 1.39229 * 120.05606 * 0.53539 * 22 21 5 26 26 O 1.35900 * 119.94296 * 179.69821 * 25 22 21 27 27 C 1.42892 * 116.99819 * 270.02063 * 26 25 22 28 28 H 1.08996 * 109.47296 * 300.00492 * 1 2 3 29 29 H 1.09007 * 109.46648 * 60.00259 * 1 2 3 30 30 H 1.08997 * 109.47412 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.02306 * 0.02562 * 4 3 2 32 32 H 1.08995 * 109.47320 * 85.52943 * 9 8 6 33 33 H 1.08998 * 109.47282 * 325.52469 * 9 8 6 34 34 H 1.09008 * 109.47354 * 205.53129 * 9 8 6 35 35 H 1.09004 * 109.47705 * 295.49830 * 12 10 8 36 36 H 1.09004 * 109.47438 * 55.49792 * 12 10 8 37 37 H 1.08999 * 109.47157 * 175.49926 * 12 10 8 38 38 H 0.96996 * 119.99686 * 180.02562 * 16 15 13 39 39 H 1.08003 * 120.03166 * 179.73112 * 21 5 4 40 40 H 1.09000 * 109.47618 * 179.97438 * 24 23 22 41 41 H 1.09002 * 109.46849 * 300.00224 * 24 23 22 42 42 H 1.08997 * 109.46834 * 59.99607 * 24 23 22 43 43 H 1.08998 * 109.47625 * 60.00174 * 27 26 25 44 44 H 1.09005 * 109.47147 * 179.97438 * 27 26 25 45 45 H 1.08998 * 109.47230 * 299.99839 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2931 2.3708 -0.0005 5 6 1.9279 3.6152 -0.0011 6 6 1.1259 4.8543 -0.0011 7 8 0.0657 4.8922 -0.5951 8 7 1.5687 5.9437 0.6572 9 6 2.9040 5.9429 1.2600 10 6 0.7148 7.1289 0.7701 11 1 -0.2324 6.9437 0.2638 12 6 1.4142 8.3249 0.1212 13 6 0.4577 7.4260 2.2250 14 1 1.2037 7.1804 2.9664 15 6 -0.7298 8.0115 2.6096 16 7 -1.0472 8.0791 3.8841 17 14 -1.8879 8.7087 1.3205 18 1 -2.8900 7.6785 0.9463 19 1 -2.5840 9.8989 1.8721 20 1 -1.1107 9.1029 0.1181 21 6 3.3232 3.6848 -0.0068 22 6 4.0721 2.5229 -0.0009 23 8 5.4304 2.5901 -0.0012 24 6 6.0156 3.8938 -0.0017 25 6 3.4369 1.2840 -0.0004 26 8 4.1754 0.1431 -0.0008 27 6 4.5275 -0.4013 -1.2741 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.2146 2.3142 -0.0005 32 1 3.6407 6.2346 0.5116 33 1 3.1359 4.9434 1.6279 34 1 2.9288 6.6500 2.0892 35 1 2.3221 8.5603 0.6766 36 1 1.6719 8.0800 -0.9093 37 1 0.7469 9.1867 0.1338 38 1 -1.8828 8.4907 4.1546 39 1 3.8164 4.6456 -0.0116 40 1 7.1019 3.8045 -0.0015 41 1 5.6953 4.4354 -0.8917 42 1 5.6958 4.4358 0.8882 43 1 5.1154 0.3282 -1.8313 44 1 5.1152 -1.3082 -1.1316 45 1 3.6211 -0.6390 -1.8309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:10 Heat of formation + Delta-G solvation = -92.750889 kcal Electronic energy + Delta-G solvation = -28600.491833 eV Core-core repulsion = 24585.949508 eV Total energy + Delta-G solvation = -4014.542325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02862 -39.30646 -39.10421 -37.81184 -36.08493 -35.57278 -32.84925 -31.17249 -30.01581 -29.51276 -27.99834 -27.23579 -26.81618 -26.26361 -25.27359 -23.41669 -22.04937 -21.17877 -19.39457 -18.02812 -17.80780 -17.27191 -16.94858 -16.61622 -16.37263 -15.81408 -15.66086 -15.61751 -15.11804 -14.88351 -14.66913 -14.43243 -14.33650 -13.64939 -13.21398 -12.97599 -12.80384 -12.58417 -12.53262 -12.29219 -12.13509 -11.99201 -11.87380 -11.73447 -11.63336 -11.38835 -11.29764 -11.12147 -10.72082 -10.59254 -10.36300 -10.02640 -9.80498 -9.39586 -9.24368 -8.67173 -8.33105 -8.23786 -7.78682 -6.23370 -4.23847 0.79960 1.28360 2.68569 2.97958 3.24071 3.33426 3.36828 3.47282 3.58335 3.67622 3.95490 4.32766 4.66179 4.84321 4.89320 4.99794 5.02569 5.03894 5.12254 5.14042 5.19747 5.26311 5.30472 5.31873 5.35380 5.44374 5.58313 5.62431 5.73491 5.77846 6.05390 6.17876 6.21002 6.24825 6.27930 6.34370 6.50988 6.85549 6.90211 6.99671 7.12042 7.38754 7.55056 7.59352 8.00562 8.39371 8.73165 8.80434 9.39541 10.88421 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.003891 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.833411 B = 7194.070869 C = 8249.735037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.141 3.859 4 C -0.179 4.179 5 C -0.040 4.040 6 C 0.547 3.453 7 O -0.546 6.546 8 N -0.575 5.575 9 C 0.071 3.929 10 C 0.228 3.772 11 H 0.063 0.937 12 C -0.154 4.154 13 C -0.532 4.532 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.886 5.886 17 Si 0.866 3.134 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.255 1.255 21 C -0.214 4.214 22 C 0.140 3.860 23 O -0.303 6.303 24 C 0.021 3.979 25 C 0.041 3.959 26 O -0.312 6.312 27 C 0.036 3.964 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.145 0.855 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.267 0.733 39 H 0.155 0.845 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.828 -12.577 -9.555 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.216 6.216 3 C 0.094 3.906 4 C -0.199 4.199 5 C -0.044 4.044 6 C 0.334 3.666 7 O -0.426 6.426 8 N -0.304 5.304 9 C -0.072 4.072 10 C 0.127 3.873 11 H 0.081 0.919 12 C -0.213 4.213 13 C -0.570 4.570 14 H 0.097 0.903 15 C -0.123 4.123 16 N -0.522 5.522 17 Si 0.693 3.307 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.179 1.179 21 C -0.233 4.233 22 C 0.094 3.906 23 O -0.216 6.216 24 C -0.074 4.074 25 C -0.005 4.005 26 O -0.228 6.228 27 C -0.059 4.059 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.163 0.837 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.172 0.828 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.420 -12.890 -9.552 19.694 hybrid contribution -0.953 0.939 -0.616 1.473 sum 10.467 -11.951 -10.168 18.862 Atomic orbital electron populations 1.23177 0.77842 1.04075 1.02194 1.86119 1.21640 1.25542 1.88323 1.18777 0.90475 0.84935 0.96367 1.21125 1.00988 0.90074 1.07718 1.19731 0.92835 0.93969 0.97858 1.18128 0.85413 0.83091 0.80002 1.90738 1.23369 1.83857 1.44642 1.48120 1.16491 1.14757 1.51067 1.22128 0.83698 1.02984 0.98431 1.19242 0.90394 0.80201 0.97463 0.91889 1.22377 1.01158 1.00038 0.97709 1.21078 1.03678 1.41750 0.90501 0.90324 1.24902 0.96957 0.95195 0.95222 1.69932 1.23862 1.43015 1.15415 0.87058 0.81642 0.79301 0.82718 1.19941 1.21110 1.17899 1.21826 0.93739 0.98436 1.09306 1.18776 0.83061 0.92309 0.96484 1.86134 1.16164 1.30876 1.88383 1.23182 0.99114 0.83163 1.01910 1.17068 0.86295 0.84698 1.12438 1.86101 1.70296 1.37651 1.28767 1.22968 0.99524 0.98389 0.84993 0.92032 0.92197 0.87980 0.83732 0.93670 0.91324 0.89581 0.93127 0.95465 0.92040 0.92350 0.82798 0.87927 0.92439 0.92011 0.93760 0.89120 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.15 10.27 -34.48 -0.35 -4.50 16 3 C 0.14 2.12 6.69 -39.21 -0.26 1.86 16 4 C -0.18 -2.88 8.59 -39.04 -0.34 -3.22 16 5 C -0.04 -0.69 5.40 -104.98 -0.57 -1.26 16 6 C 0.55 11.39 7.40 -12.44 -0.09 11.30 16 7 O -0.55 -13.13 16.15 5.29 0.09 -13.05 16 8 N -0.57 -11.85 2.75 -176.46 -0.49 -12.33 16 9 C 0.07 1.14 7.88 59.85 0.47 1.61 16 10 C 0.23 5.36 2.20 -69.08 -0.15 5.21 16 11 H 0.06 1.64 4.95 -51.93 -0.26 1.38 16 12 C -0.15 -3.15 8.85 37.15 0.33 -2.82 16 13 C -0.53 -14.28 8.67 -34.44 -0.30 -14.58 16 14 H 0.08 2.23 6.90 -52.48 -0.36 1.87 16 15 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 16 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 17 Si 0.87 21.13 26.41 -169.99 -4.49 16.65 16 18 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.25 -5.84 5.41 56.52 0.31 -5.53 16 21 C -0.21 -3.08 6.49 -39.04 -0.25 -3.34 16 22 C 0.14 1.98 6.69 -39.22 -0.26 1.72 16 23 O -0.30 -3.79 10.27 -34.49 -0.35 -4.14 16 24 C 0.02 0.18 9.81 101.05 0.99 1.17 16 25 C 0.04 0.61 5.75 -38.84 -0.22 0.39 16 26 O -0.31 -4.55 9.96 -44.82 -0.45 -4.99 16 27 C 0.04 0.38 11.13 101.05 1.12 1.51 16 28 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.06 0.58 7.66 -51.92 -0.40 0.18 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.15 2.27 6.20 -52.49 -0.33 1.95 16 32 H 0.05 0.58 6.95 -51.93 -0.36 0.22 16 33 H 0.07 1.02 5.50 -51.93 -0.29 0.73 16 34 H 0.09 1.47 6.64 -51.92 -0.34 1.13 16 35 H 0.05 0.95 7.82 -51.93 -0.41 0.54 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 1.28 5.86 -51.93 -0.30 0.98 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.15 1.93 3.00 -52.48 -0.16 1.77 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.44 7.64 -51.93 -0.40 0.04 16 42 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -34.01 361.85 -4.62 -38.62 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.16 Total: 0.77 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 1.36 Total: 2.96 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.29 Total: -37.77 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -1.07 Total: -26.68 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.49 Total: 16.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.01 -4.62 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.129 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds