Wall clock time and date at job start Tue Mar 31 2020 14:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 117.00195 * 2 1 4 4 C 1.38232 * 119.97430 * 359.97438 * 3 2 1 5 5 C 1.39699 * 119.94815 * 180.02562 * 4 3 2 6 6 C 1.47607 * 120.05932 * 180.02562 * 5 4 3 7 7 O 1.21591 * 119.99821 * 325.63418 * 6 5 4 8 8 N 1.34768 * 120.00465 * 145.63707 * 6 5 4 9 9 C 1.46502 * 119.99889 * 6.07494 * 8 6 5 10 10 C 1.46509 * 120.00225 * 186.07719 * 8 6 5 11 11 H 1.08991 * 109.46962 * 359.97438 * 10 8 6 12 12 C 1.52995 * 109.46848 * 239.99711 * 10 8 6 13 13 C 1.50702 * 109.47015 * 119.99736 * 10 8 6 14 14 H 1.08004 * 119.99994 * 30.94504 * 13 10 8 15 15 C 1.37873 * 119.99847 * 210.93308 * 13 10 8 16 16 N 1.31521 * 119.99874 * 169.26193 * 15 13 10 17 17 Si 1.86795 * 120.00137 * 349.27027 * 15 13 10 18 18 H 1.48505 * 109.47208 * 93.48074 * 17 15 13 19 19 H 1.48500 * 109.47195 * 213.48094 * 17 15 13 20 20 H 1.48500 * 109.47255 * 333.48338 * 17 15 13 21 21 C 1.39701 * 119.88600 * 0.27209 * 5 4 3 22 22 C 1.38233 * 119.94222 * 359.46970 * 21 5 4 23 23 O 1.36001 * 119.97171 * 180.25451 * 22 21 5 24 24 C 1.42900 * 117.00400 * 0.28101 * 23 22 21 25 25 C 1.39229 * 120.05606 * 0.53539 * 22 21 5 26 26 O 1.35900 * 119.94296 * 179.69821 * 25 22 21 27 27 C 1.42892 * 116.99819 * 270.02063 * 26 25 22 28 28 H 1.08996 * 109.47296 * 300.00492 * 1 2 3 29 29 H 1.09007 * 109.46648 * 60.00259 * 1 2 3 30 30 H 1.08997 * 109.47412 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.02306 * 0.02562 * 4 3 2 32 32 H 1.08995 * 109.47320 * 85.52943 * 9 8 6 33 33 H 1.08998 * 109.47282 * 325.52469 * 9 8 6 34 34 H 1.09008 * 109.47354 * 205.53129 * 9 8 6 35 35 H 1.09004 * 109.47705 * 295.49830 * 12 10 8 36 36 H 1.09004 * 109.47438 * 55.49792 * 12 10 8 37 37 H 1.08999 * 109.47157 * 175.49926 * 12 10 8 38 38 H 0.96996 * 119.99686 * 180.02562 * 16 15 13 39 39 H 1.08003 * 120.03166 * 179.73112 * 21 5 4 40 40 H 1.09000 * 109.47618 * 179.97438 * 24 23 22 41 41 H 1.09002 * 109.46849 * 300.00224 * 24 23 22 42 42 H 1.08997 * 109.46834 * 59.99607 * 24 23 22 43 43 H 1.08998 * 109.47625 * 60.00174 * 27 26 25 44 44 H 1.09005 * 109.47147 * 179.97438 * 27 26 25 45 45 H 1.08998 * 109.47230 * 299.99839 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2931 2.3708 -0.0005 5 6 1.9279 3.6152 -0.0011 6 6 1.1259 4.8543 -0.0011 7 8 0.0657 4.8922 -0.5951 8 7 1.5687 5.9437 0.6572 9 6 2.9040 5.9429 1.2600 10 6 0.7148 7.1289 0.7701 11 1 -0.2324 6.9437 0.2638 12 6 1.4142 8.3249 0.1212 13 6 0.4577 7.4260 2.2250 14 1 1.2037 7.1804 2.9664 15 6 -0.7298 8.0115 2.6096 16 7 -1.0472 8.0791 3.8841 17 14 -1.8879 8.7087 1.3205 18 1 -2.8900 7.6785 0.9463 19 1 -2.5840 9.8989 1.8721 20 1 -1.1107 9.1029 0.1181 21 6 3.3232 3.6848 -0.0068 22 6 4.0721 2.5229 -0.0009 23 8 5.4304 2.5901 -0.0012 24 6 6.0156 3.8938 -0.0017 25 6 3.4369 1.2840 -0.0004 26 8 4.1754 0.1431 -0.0008 27 6 4.5275 -0.4013 -1.2741 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.2146 2.3142 -0.0005 32 1 3.6407 6.2346 0.5116 33 1 3.1359 4.9434 1.6279 34 1 2.9288 6.6500 2.0892 35 1 2.3221 8.5603 0.6766 36 1 1.6719 8.0800 -0.9093 37 1 0.7469 9.1867 0.1338 38 1 -1.8828 8.4907 4.1546 39 1 3.8164 4.6456 -0.0116 40 1 7.1019 3.8045 -0.0015 41 1 5.6953 4.4354 -0.8917 42 1 5.6958 4.4358 0.8882 43 1 5.1154 0.3282 -1.8313 44 1 5.1152 -1.3082 -1.1316 45 1 3.6211 -0.6390 -1.8309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:09 Heat of formation + Delta-G solvation = -116.104232 kcal Electronic energy + Delta-G solvation = -28601.504510 eV Core-core repulsion = 24585.949508 eV Total energy + Delta-G solvation = -4015.555002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18027 -40.77964 -40.09258 -38.82895 -37.40548 -37.14121 -34.78050 -32.78376 -31.21682 -30.74174 -28.90268 -28.09534 -27.97929 -27.42553 -27.21903 -24.73128 -23.14644 -22.63201 -20.84539 -19.42267 -19.20720 -18.56270 -18.37482 -17.76071 -17.47493 -17.25992 -17.09630 -16.50824 -16.29681 -16.04908 -15.99050 -15.80035 -15.52415 -15.04645 -14.62603 -14.39397 -14.12489 -14.08910 -13.94275 -13.63171 -13.41075 -13.33112 -13.20104 -12.79715 -12.72672 -12.58629 -12.46608 -12.43895 -12.23908 -12.20840 -11.74529 -11.63166 -11.31832 -11.03374 -10.88526 -10.78533 -9.56075 -9.38538 -9.30324 -8.38149 -6.41043 -0.41844 0.15843 1.28999 1.35061 1.42645 1.58222 1.73914 2.09021 2.29460 2.39495 2.60581 2.78449 3.01747 3.37685 3.75946 3.83261 3.92419 4.18834 4.22003 4.30854 4.31420 4.36898 4.44060 4.44576 4.49199 4.50818 4.53145 4.66327 4.68265 4.73027 4.75877 4.78985 4.81471 4.91301 4.95329 5.06498 5.09598 5.13850 5.33925 5.54603 5.71865 5.91994 6.10840 6.15352 6.56261 6.59175 6.63628 7.11298 7.27364 8.76869 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.003891 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.833411 B = 7194.070869 C = 8249.735037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.311 6.311 3 C 0.139 3.861 4 C -0.188 4.188 5 C -0.060 4.060 6 C 0.542 3.458 7 O -0.589 6.589 8 N -0.582 5.582 9 C 0.066 3.934 10 C 0.228 3.772 11 H 0.037 0.963 12 C -0.146 4.146 13 C -0.527 4.527 14 H 0.054 0.946 15 C 0.028 3.972 16 N -0.932 5.932 17 Si 0.918 3.082 18 H -0.287 1.287 19 H -0.277 1.277 20 H -0.230 1.230 21 C -0.201 4.201 22 C 0.146 3.854 23 O -0.310 6.310 24 C 0.007 3.993 25 C 0.035 3.965 26 O -0.329 6.329 27 C 0.032 3.968 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.268 0.732 39 H 0.175 0.825 40 H 0.129 0.871 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.115 0.885 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.070 -12.967 -11.154 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.224 6.224 3 C 0.092 3.908 4 C -0.208 4.208 5 C -0.063 4.063 6 C 0.331 3.669 7 O -0.472 6.472 8 N -0.310 5.310 9 C -0.075 4.075 10 C 0.125 3.875 11 H 0.055 0.945 12 C -0.204 4.204 13 C -0.565 4.565 14 H 0.072 0.928 15 C -0.172 4.172 16 N -0.571 5.571 17 Si 0.743 3.257 18 H -0.214 1.214 19 H -0.203 1.203 20 H -0.153 1.153 21 C -0.220 4.220 22 C 0.099 3.901 23 O -0.223 6.223 24 C -0.087 4.087 25 C -0.011 4.011 26 O -0.246 6.246 27 C -0.062 4.062 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.192 0.808 40 H 0.147 0.853 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.133 0.867 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.717 -13.276 -11.159 22.111 hybrid contribution -1.507 0.905 -0.097 1.760 sum 12.210 -12.371 -11.256 20.708 Atomic orbital electron populations 1.23431 0.76214 1.06089 1.02118 1.86113 1.23305 1.24883 1.88116 1.18788 0.90726 0.84982 0.96256 1.21098 1.00920 0.90370 1.08434 1.19457 0.93720 0.92406 1.00721 1.18637 0.85149 0.83915 0.79192 1.90699 1.25381 1.84591 1.46538 1.48088 1.17695 1.14008 1.51258 1.22397 0.82329 1.03625 0.99182 1.19053 0.90776 0.82539 0.95095 0.94479 1.22223 1.01353 0.97974 0.98868 1.21318 1.02765 1.40434 0.91995 0.92820 1.25648 0.98807 0.95934 0.96807 1.70042 1.24779 1.44986 1.17288 0.86233 0.79667 0.78410 0.81411 1.21403 1.20269 1.15295 1.21877 0.92394 0.99513 1.08181 1.18744 0.84001 0.91741 0.95653 1.86149 1.14863 1.33355 1.87916 1.23573 1.00541 0.81706 1.02838 1.17323 0.86471 0.85476 1.11813 1.86054 1.70163 1.37505 1.30855 1.23185 1.00019 0.99354 0.83668 0.92492 0.91930 0.84917 0.84361 0.89397 0.90073 0.90834 0.91399 0.93330 0.92534 0.92297 0.80812 0.85283 0.91251 0.91230 0.93139 0.86670 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.31 -8.28 10.27 -79.46 -0.82 -9.10 16 3 C 0.14 4.12 6.69 22.51 0.15 4.27 16 4 C -0.19 -6.09 8.59 22.62 0.19 -5.90 16 5 C -0.06 -2.02 5.40 -20.10 -0.11 -2.13 16 6 C 0.54 22.59 7.40 86.72 0.64 23.23 16 7 O -0.59 -28.93 16.15 -4.00 -0.06 -28.99 16 8 N -0.58 -23.52 2.75 -830.47 -2.29 -25.80 16 9 C 0.07 2.00 7.88 127.77 1.01 3.00 16 10 C 0.23 10.60 2.20 44.24 0.10 10.69 16 11 H 0.04 1.93 4.95 -2.39 -0.01 1.92 16 12 C -0.15 -5.62 8.85 71.98 0.64 -4.98 16 13 C -0.53 -28.64 8.67 25.60 0.22 -28.42 16 14 H 0.05 3.12 6.90 -2.91 -0.02 3.10 16 15 C 0.03 1.59 5.47 84.65 0.46 2.06 16 16 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 17 Si 0.92 44.00 26.41 68.60 1.81 45.81 16 18 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.23 -9.99 5.41 99.48 0.54 -9.45 16 21 C -0.20 -5.37 6.49 22.62 0.15 -5.22 16 22 C 0.15 3.82 6.69 22.51 0.15 3.97 16 23 O -0.31 -6.85 10.27 -79.47 -0.82 -7.67 16 24 C 0.01 0.10 9.81 113.37 1.11 1.21 16 25 C 0.03 1.01 5.75 22.75 0.13 1.14 16 26 O -0.33 -9.03 9.96 -68.15 -0.68 -9.71 16 27 C 0.03 0.61 11.13 113.37 1.26 1.87 16 28 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 29 H 0.06 1.20 7.66 -2.38 -0.02 1.18 16 30 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.14 4.52 6.20 -2.91 -0.02 4.50 16 32 H 0.09 1.90 6.95 -2.39 -0.02 1.88 16 33 H 0.08 2.25 5.50 -2.39 -0.01 2.23 16 34 H 0.07 2.42 6.64 -2.38 -0.02 2.41 16 35 H 0.07 2.35 7.82 -2.38 -0.02 2.33 16 36 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.06 2.22 5.86 -2.39 -0.01 2.20 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.17 3.77 3.00 -2.91 -0.01 3.76 16 40 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.78 7.64 -2.39 -0.02 0.76 16 42 H 0.07 0.83 7.67 -2.39 -0.02 0.81 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -75.77 361.85 5.52 -70.24 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.86 Total: 15.32 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 7.22 Total: 6.21 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.99 Total: -82.13 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -2.38 Total: -55.46 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.81 Total: 45.81 kcal Total: -75.77 5.52 -70.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.862 kcal (2) G-P(sol) polarization free energy of solvation -75.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds