Wall clock time and date at job start Tue Mar 31 2020 14:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35820 * 117.00115 * 2 1 4 4 C 1.39078 * 119.87720 * 359.97438 * 3 2 1 5 5 C 1.37600 * 120.27837 * 179.97438 * 4 3 2 6 6 C 1.39889 * 120.03382 * 0.28375 * 5 4 3 7 7 C 1.47314 * 120.11591 * 179.69870 * 6 5 4 8 8 O 1.21623 * 119.99891 * 126.80848 * 7 6 5 9 9 N 1.34771 * 119.99826 * 306.81023 * 7 6 5 10 10 C 1.46501 * 120.00316 * 3.80142 * 9 7 6 11 11 C 1.46500 * 119.99976 * 183.80249 * 9 7 6 12 12 H 1.09008 * 109.47268 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47292 * 119.99950 * 11 9 7 14 14 C 1.50698 * 109.47302 * 239.99744 * 11 9 7 15 15 H 1.08003 * 119.99786 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00430 * 179.97438 * 14 11 9 17 17 N 1.31519 * 119.99800 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00565 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47111 * 120.00077 * 18 16 14 21 21 H 1.48492 * 109.47597 * 240.00447 * 18 16 14 22 22 C 1.40208 * 119.76145 * 359.41905 * 6 5 4 23 23 O 1.35764 * 120.13923 * 180.27477 * 22 6 5 24 24 C 1.42897 * 117.00284 * 275.04280 * 23 22 6 25 25 C 1.38807 * 119.72050 * 0.57749 * 22 6 5 26 26 O 1.36106 * 120.01660 * 179.69947 * 25 22 6 27 27 C 1.42906 * 116.99732 * 85.13046 * 26 25 22 28 28 H 1.08994 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47531 * 300.00281 * 1 2 3 30 30 H 1.08999 * 109.46825 * 60.00139 * 1 2 3 31 31 H 1.07991 * 119.86117 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.97993 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47376 * 94.23899 * 10 9 7 34 34 H 1.09004 * 109.47122 * 214.24104 * 10 9 7 35 35 H 1.08999 * 109.46648 * 334.23771 * 10 9 7 36 36 H 1.08995 * 109.46969 * 60.00078 * 13 11 9 37 37 H 1.09003 * 109.47223 * 180.02562 * 13 11 9 38 38 H 1.09006 * 109.46641 * 299.99617 * 13 11 9 39 39 H 0.96995 * 120.00370 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.46829 * 295.00726 * 24 23 22 41 41 H 1.08997 * 109.46960 * 55.00546 * 24 23 22 42 42 H 1.08994 * 109.47161 * 175.00628 * 24 23 22 43 43 H 1.09002 * 109.47088 * 304.98069 * 27 26 25 44 44 H 1.08997 * 109.46978 * 64.98674 * 27 26 25 45 45 H 1.09004 * 109.46528 * 184.98143 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2856 2.3750 -0.0005 5 6 1.9018 3.6053 0.0000 6 6 3.2981 3.6891 -0.0049 7 6 3.9596 5.0054 -0.0111 8 8 4.7993 5.2679 0.8287 9 7 3.6342 5.9187 -0.9472 10 6 2.5645 5.6347 -1.9071 11 6 4.3502 7.1955 -1.0050 12 1 5.1040 7.2253 -0.2181 13 6 5.0296 7.3380 -2.3685 14 6 3.3750 8.3276 -0.8089 15 1 2.3267 8.1170 -0.6569 16 6 3.8211 9.6321 -0.8235 17 7 5.0976 9.8885 -1.0091 18 14 2.6123 11.0354 -0.5812 19 1 1.2458 10.4850 -0.3943 20 1 2.9981 11.8194 0.6196 21 1 2.6319 11.9176 -1.7755 22 6 4.0658 2.5159 0.0020 23 8 5.4215 2.5883 0.0029 24 6 6.0646 2.7280 -1.2655 25 6 3.4339 1.2800 0.0015 26 8 4.1732 0.1372 0.0019 27 6 4.6154 -0.3488 1.2710 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2075 2.3135 -0.0014 32 1 1.3069 4.5067 -0.0009 33 1 1.6252 6.0452 -1.5364 34 1 2.8069 6.0911 -2.8668 35 1 2.4655 4.5564 -2.0322 36 1 4.2755 7.3084 -3.1549 37 1 5.5627 8.2879 -2.4113 38 1 5.7350 6.5192 -2.5102 39 1 5.4115 10.8062 -1.0198 40 1 5.8904 1.8323 -1.8618 41 1 5.6580 3.5954 -1.7854 42 1 7.1359 2.8628 -1.1168 43 1 5.1660 0.4365 1.7890 44 1 3.7523 -0.6422 1.8685 45 1 5.2652 -1.2114 1.1232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:12 Heat of formation + Delta-G solvation = -101.731713 kcal Electronic energy + Delta-G solvation = -28813.276005 eV Core-core repulsion = 24798.344243 eV Total energy + Delta-G solvation = -4014.931763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94180 -39.30617 -38.56840 -37.46636 -36.24002 -35.27026 -32.85368 -30.64349 -30.11509 -29.06853 -27.63985 -27.11437 -26.38856 -26.12583 -25.22649 -23.43756 -22.24999 -21.04738 -19.07264 -18.42215 -17.45711 -17.29387 -16.61678 -16.30319 -16.24581 -15.81654 -15.42808 -15.38167 -15.00560 -14.75314 -14.52165 -14.44406 -14.15642 -13.42486 -13.21565 -13.02029 -12.63066 -12.51029 -12.44585 -12.19768 -11.92631 -11.71602 -11.62365 -11.56634 -11.34560 -11.07718 -10.87738 -10.81086 -10.72038 -10.39473 -10.25425 -10.17775 -9.75123 -9.17787 -8.99388 -8.72307 -8.44216 -8.22221 -7.59254 -6.07695 -4.15531 0.92560 0.98486 2.85180 3.02298 3.25469 3.33537 3.36062 3.58470 3.69329 3.87880 4.10421 4.39577 4.64842 4.83132 4.89292 4.94733 5.02209 5.19394 5.21472 5.23834 5.26528 5.32226 5.38007 5.45002 5.49978 5.64474 5.70813 5.79562 5.94168 6.01653 6.03887 6.17549 6.27388 6.28990 6.74288 6.80051 6.90396 7.03731 7.28980 7.42367 7.51194 7.66515 7.70641 8.00569 8.18424 8.49848 8.82762 9.03584 9.50969 10.97714 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.003662 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.488654 B = 7643.893087 C = 8566.764157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.134 3.866 4 C -0.209 4.209 5 C -0.039 4.039 6 C -0.161 4.161 7 C 0.550 3.450 8 O -0.530 6.530 9 N -0.587 5.587 10 C 0.083 3.917 11 C 0.258 3.742 12 H 0.064 0.936 13 C -0.147 4.147 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.160 3.840 23 O -0.318 6.318 24 C 0.043 3.957 25 C 0.036 3.964 26 O -0.318 6.318 27 C 0.037 3.963 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.030 0.970 37 H 0.095 0.905 38 H 0.010 0.990 39 H 0.263 0.737 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.043 0.957 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 -19.332 -1.303 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.088 3.912 4 C -0.228 4.228 5 C -0.058 4.058 6 C -0.165 4.165 7 C 0.336 3.664 8 O -0.407 6.407 9 N -0.319 5.319 10 C -0.061 4.061 11 C 0.158 3.842 12 H 0.082 0.918 13 C -0.205 4.205 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C 0.114 3.886 23 O -0.234 6.234 24 C -0.051 4.051 25 C -0.009 4.009 26 O -0.234 6.234 27 C -0.058 4.058 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.113 0.887 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.948 -19.312 -0.893 20.543 hybrid contribution -1.158 1.092 0.090 1.594 sum -8.106 -18.220 -0.803 19.958 Atomic orbital electron populations 1.23133 0.78280 1.04072 1.01652 1.86119 1.21329 1.26065 1.88124 1.19293 0.90879 0.84969 0.96099 1.21088 1.00307 0.91286 1.10079 1.21115 0.92700 0.97903 0.94043 1.20468 0.94021 0.94458 1.07535 1.17843 0.82861 0.83270 0.82429 1.90783 1.33487 1.79063 1.37416 1.48194 1.35485 1.18081 1.30101 1.21690 0.90973 0.99372 0.94064 1.18968 0.92262 0.77556 0.95367 0.91796 1.22098 0.98766 1.01829 0.97823 1.21337 0.94464 0.90484 1.49952 0.92223 1.24892 0.95298 0.98702 0.94905 1.69885 1.13380 1.19922 1.49412 0.86438 0.81125 0.82026 0.77779 1.19842 1.20915 1.20957 1.18660 0.83985 0.89558 0.96415 1.85954 1.14098 1.93203 1.30117 1.23012 0.98001 1.00462 0.83621 1.18027 0.86773 0.85953 1.10127 1.86070 1.69549 1.38009 1.29762 1.23006 0.98826 0.99277 0.84683 0.88130 0.92431 0.92306 0.84248 0.84036 0.93054 0.91055 0.92647 0.95051 0.88701 0.97049 0.92733 0.93234 0.93245 0.88502 0.92974 0.93852 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.55 10.26 -34.05 -0.35 -3.90 16 3 C 0.13 1.78 6.70 -38.99 -0.26 1.52 16 4 C -0.21 -2.46 9.01 -39.50 -0.36 -2.81 16 5 C -0.04 -0.55 7.71 -39.20 -0.30 -0.85 16 6 C -0.16 -2.85 4.74 -104.85 -0.50 -3.34 16 7 C 0.55 12.04 6.45 -12.57 -0.08 11.96 16 8 O -0.53 -13.86 16.03 0.21 0.00 -13.86 16 9 N -0.59 -12.67 2.75 -176.57 -0.49 -13.15 16 10 C 0.08 1.40 8.48 59.85 0.51 1.91 16 11 C 0.26 6.59 2.63 -69.08 -0.18 6.41 16 12 H 0.06 1.90 6.90 -51.92 -0.36 1.55 16 13 C -0.15 -3.47 8.94 37.16 0.33 -3.14 16 14 C -0.52 -14.07 8.37 -34.44 -0.29 -14.36 16 15 H 0.06 1.57 7.53 -52.48 -0.39 1.18 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 18 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.16 2.75 5.73 -38.63 -0.22 2.53 16 23 O -0.32 -5.73 9.37 -40.20 -0.38 -6.11 16 24 C 0.04 0.64 11.01 101.05 1.11 1.75 16 25 C 0.04 0.56 5.74 -39.09 -0.22 0.33 16 26 O -0.32 -4.71 9.97 -45.51 -0.45 -5.16 16 27 C 0.04 0.43 11.13 101.05 1.13 1.55 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 30 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 31 H 0.14 1.17 6.27 -52.49 -0.33 0.84 16 32 H 0.14 1.85 7.04 -52.49 -0.37 1.48 16 33 H 0.05 0.82 7.63 -51.93 -0.40 0.42 16 34 H 0.07 1.20 6.44 -51.93 -0.33 0.86 16 35 H 0.05 0.80 5.79 -51.93 -0.30 0.50 16 36 H 0.03 0.68 6.69 -51.93 -0.35 0.33 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 42 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -33.78 371.14 -5.34 -39.13 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.44 Total: -0.33 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 1.56 Total: 6.26 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.14 Total: -37.55 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.18 Total: -29.03 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.78 -5.34 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.604 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds