Wall clock time and date at job start Tue Mar 31 2020 14:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35820 * 117.00115 * 2 1 4 4 C 1.39078 * 119.87720 * 359.97438 * 3 2 1 5 5 C 1.37600 * 120.27837 * 179.97438 * 4 3 2 6 6 C 1.39889 * 120.03382 * 0.28375 * 5 4 3 7 7 C 1.47314 * 120.11591 * 179.69870 * 6 5 4 8 8 O 1.21623 * 119.99891 * 126.80848 * 7 6 5 9 9 N 1.34771 * 119.99826 * 306.81023 * 7 6 5 10 10 C 1.46501 * 120.00316 * 3.80142 * 9 7 6 11 11 C 1.46500 * 119.99976 * 183.80249 * 9 7 6 12 12 H 1.09008 * 109.47268 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47292 * 119.99950 * 11 9 7 14 14 C 1.50698 * 109.47302 * 239.99744 * 11 9 7 15 15 H 1.08003 * 119.99786 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00430 * 179.97438 * 14 11 9 17 17 N 1.31519 * 119.99800 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00565 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47111 * 120.00077 * 18 16 14 21 21 H 1.48492 * 109.47597 * 240.00447 * 18 16 14 22 22 C 1.40208 * 119.76145 * 359.41905 * 6 5 4 23 23 O 1.35764 * 120.13923 * 180.27477 * 22 6 5 24 24 C 1.42897 * 117.00284 * 275.04280 * 23 22 6 25 25 C 1.38807 * 119.72050 * 0.57749 * 22 6 5 26 26 O 1.36106 * 120.01660 * 179.69947 * 25 22 6 27 27 C 1.42906 * 116.99732 * 85.13046 * 26 25 22 28 28 H 1.08994 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47531 * 300.00281 * 1 2 3 30 30 H 1.08999 * 109.46825 * 60.00139 * 1 2 3 31 31 H 1.07991 * 119.86117 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.97993 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47376 * 94.23899 * 10 9 7 34 34 H 1.09004 * 109.47122 * 214.24104 * 10 9 7 35 35 H 1.08999 * 109.46648 * 334.23771 * 10 9 7 36 36 H 1.08995 * 109.46969 * 60.00078 * 13 11 9 37 37 H 1.09003 * 109.47223 * 180.02562 * 13 11 9 38 38 H 1.09006 * 109.46641 * 299.99617 * 13 11 9 39 39 H 0.96995 * 120.00370 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.46829 * 295.00726 * 24 23 22 41 41 H 1.08997 * 109.46960 * 55.00546 * 24 23 22 42 42 H 1.08994 * 109.47161 * 175.00628 * 24 23 22 43 43 H 1.09002 * 109.47088 * 304.98069 * 27 26 25 44 44 H 1.08997 * 109.46978 * 64.98674 * 27 26 25 45 45 H 1.09004 * 109.46528 * 184.98143 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2856 2.3750 -0.0005 5 6 1.9018 3.6053 0.0000 6 6 3.2981 3.6891 -0.0049 7 6 3.9596 5.0054 -0.0111 8 8 4.7993 5.2679 0.8287 9 7 3.6342 5.9187 -0.9472 10 6 2.5645 5.6347 -1.9071 11 6 4.3502 7.1955 -1.0050 12 1 5.1040 7.2253 -0.2181 13 6 5.0296 7.3380 -2.3685 14 6 3.3750 8.3276 -0.8089 15 1 2.3267 8.1170 -0.6569 16 6 3.8211 9.6321 -0.8235 17 7 5.0976 9.8885 -1.0091 18 14 2.6123 11.0354 -0.5812 19 1 1.2458 10.4850 -0.3943 20 1 2.9981 11.8194 0.6196 21 1 2.6319 11.9176 -1.7755 22 6 4.0658 2.5159 0.0020 23 8 5.4215 2.5883 0.0029 24 6 6.0646 2.7280 -1.2655 25 6 3.4339 1.2800 0.0015 26 8 4.1732 0.1372 0.0019 27 6 4.6154 -0.3488 1.2710 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2075 2.3135 -0.0014 32 1 1.3069 4.5067 -0.0009 33 1 1.6252 6.0452 -1.5364 34 1 2.8069 6.0911 -2.8668 35 1 2.4655 4.5564 -2.0322 36 1 4.2755 7.3084 -3.1549 37 1 5.5627 8.2879 -2.4113 38 1 5.7350 6.5192 -2.5102 39 1 5.4115 10.8062 -1.0198 40 1 5.8904 1.8323 -1.8618 41 1 5.6580 3.5954 -1.7854 42 1 7.1359 2.8628 -1.1168 43 1 5.1660 0.4365 1.7890 44 1 3.7523 -0.6422 1.8685 45 1 5.2652 -1.2114 1.1232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:12 Heat of formation + Delta-G solvation = -124.006402 kcal Electronic energy + Delta-G solvation = -28814.241908 eV Core-core repulsion = 24798.344243 eV Total energy + Delta-G solvation = -4015.897666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09699 -40.65232 -39.78288 -38.62491 -37.38962 -37.11269 -34.77513 -32.09027 -31.25676 -30.57612 -28.48534 -28.15761 -27.71275 -27.35431 -27.26872 -24.77610 -23.37514 -22.62735 -20.56284 -19.53791 -18.78765 -18.56094 -18.26330 -17.63464 -17.47336 -17.10194 -16.98234 -16.42446 -16.27609 -15.96516 -15.87611 -15.71424 -15.49931 -14.95252 -14.49919 -14.36873 -13.99949 -13.75467 -13.68077 -13.49081 -13.43162 -13.00792 -12.94554 -12.83029 -12.70900 -12.65982 -12.61809 -12.22191 -12.17930 -12.10532 -11.88948 -11.50660 -11.17669 -11.01846 -10.64245 -10.49672 -9.83221 -9.40781 -9.26776 -8.13850 -6.30491 -0.21778 -0.11885 1.41815 1.43701 1.54842 1.66514 1.96776 2.24660 2.28077 2.47077 2.68907 2.92633 3.14385 3.59273 3.78286 3.89568 4.09304 4.15092 4.25530 4.33909 4.36825 4.41795 4.44563 4.46370 4.47816 4.61192 4.65521 4.71565 4.76058 4.79482 4.86179 4.88710 4.95072 4.99763 5.04245 5.11226 5.22349 5.45855 5.60605 5.66561 5.97683 6.03170 6.15388 6.22825 6.56051 6.75082 6.77230 7.28169 7.44999 8.90960 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.003662 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.488654 B = 7643.893087 C = 8566.764157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.315 6.315 3 C 0.147 3.853 4 C -0.188 4.188 5 C -0.033 4.033 6 C -0.188 4.188 7 C 0.548 3.452 8 O -0.590 6.590 9 N -0.591 5.591 10 C 0.081 3.919 11 C 0.263 3.737 12 H 0.007 0.993 13 C -0.132 4.132 14 C -0.536 4.536 15 H 0.064 0.936 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.144 3.856 23 O -0.344 6.344 24 C 0.043 3.957 25 C 0.024 3.976 26 O -0.330 6.330 27 C 0.034 3.966 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.155 0.845 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.018 0.982 39 H 0.264 0.736 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.107 0.893 43 H 0.036 0.964 44 H 0.053 0.947 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.443 -21.038 -2.076 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.228 6.228 3 C 0.100 3.900 4 C -0.206 4.206 5 C -0.051 4.051 6 C -0.192 4.192 7 C 0.337 3.663 8 O -0.472 6.472 9 N -0.321 5.321 10 C -0.061 4.061 11 C 0.161 3.839 12 H 0.025 0.975 13 C -0.191 4.191 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.200 1.200 22 C 0.098 3.902 23 O -0.260 6.260 24 C -0.050 4.050 25 C -0.022 4.022 26 O -0.247 6.247 27 C -0.060 4.060 28 H 0.140 0.860 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.201 0.799 32 H 0.172 0.828 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.126 0.874 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.635 -21.053 -1.700 23.648 hybrid contribution -0.072 1.453 0.356 1.497 sum -10.707 -19.601 -1.344 22.375 Atomic orbital electron populations 1.23556 0.75479 1.06208 1.03154 1.86128 1.24130 1.25125 1.87390 1.19340 0.90248 0.86213 0.94246 1.21425 1.02184 0.89449 1.07549 1.21255 0.90973 0.99575 0.93311 1.20157 0.95534 0.91938 1.11540 1.18478 0.82028 0.84577 0.81239 1.90733 1.36287 1.80417 1.39733 1.48161 1.36176 1.16773 1.30966 1.21930 0.89861 1.01476 0.92873 1.18574 0.91495 0.79535 0.94293 0.97490 1.21880 0.99015 1.00712 0.97446 1.21591 0.94710 0.91137 1.49999 0.91807 1.25755 0.96959 1.01296 0.94525 1.70033 1.15213 1.20472 1.50057 0.85379 0.79207 0.78668 0.77585 1.18614 1.21354 1.19988 1.18855 0.83548 0.90337 0.97468 1.85900 1.15211 1.93390 1.31544 1.23099 0.98368 1.00560 0.83016 1.18088 0.87929 0.85387 1.10747 1.86035 1.69807 1.37637 1.31239 1.23162 0.99496 0.99501 0.83808 0.85970 0.90925 0.90629 0.79875 0.82758 0.91574 0.90908 0.89768 0.93131 0.91201 0.96271 0.92667 0.91206 0.95043 0.87449 0.94544 0.92820 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -6.18 10.26 -77.32 -0.79 -6.97 16 3 C 0.15 3.46 6.70 22.65 0.15 3.61 16 4 C -0.19 -3.66 9.01 22.32 0.20 -3.46 16 5 C -0.03 -0.84 7.71 22.52 0.17 -0.67 16 6 C -0.19 -6.65 4.74 -20.01 -0.09 -6.74 16 7 C 0.55 24.95 6.45 86.63 0.56 25.51 16 8 O -0.59 -33.06 16.03 0.72 0.01 -33.04 16 9 N -0.59 -26.01 2.75 -830.78 -2.29 -28.29 16 10 C 0.08 2.61 8.48 127.77 1.08 3.70 16 11 C 0.26 13.95 2.63 44.25 0.12 14.07 16 12 H 0.01 0.46 6.90 -2.38 -0.02 0.44 16 13 C -0.13 -6.44 8.94 71.98 0.64 -5.79 16 14 C -0.54 -29.22 8.37 25.60 0.21 -29.00 16 15 H 0.06 3.34 7.53 -2.91 -0.02 3.32 16 16 C 0.01 0.77 5.30 84.65 0.45 1.22 16 17 N -0.92 -53.31 11.32 21.45 0.24 -53.06 16 18 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.14 4.99 5.73 22.89 0.13 5.12 16 23 O -0.34 -12.96 9.37 -70.63 -0.66 -13.62 16 24 C 0.04 1.34 11.01 113.37 1.25 2.58 16 25 C 0.02 0.70 5.74 22.59 0.13 0.83 16 26 O -0.33 -9.46 9.97 -70.44 -0.70 -10.16 16 27 C 0.03 0.77 11.13 113.37 1.26 2.03 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 30 H 0.08 0.47 7.65 -2.39 -0.02 0.45 16 31 H 0.18 1.95 6.27 -2.92 -0.02 1.93 16 32 H 0.15 3.56 7.04 -2.91 -0.02 3.53 16 33 H 0.07 1.95 7.63 -2.39 -0.02 1.93 16 34 H 0.07 2.33 6.44 -2.38 -0.02 2.31 16 35 H 0.08 2.24 5.79 -2.39 -0.01 2.23 16 36 H 0.05 2.21 6.69 -2.39 -0.02 2.19 16 37 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 38 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.03 1.06 7.85 -2.39 -0.02 1.04 16 42 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -78.40 371.14 6.22 -72.18 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.00 Total: 13.79 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 7.38 Total: 14.21 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -2.04 Total: -81.36 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -2.15 Total: -63.80 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -78.40 6.22 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.823 kcal (2) G-P(sol) polarization free energy of solvation -78.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds