Wall clock time and date at job start Tue Mar 31 2020 14:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47263 * 2 1 4 4 C 1.50698 * 109.47354 * 120.00331 * 2 1 3 5 5 H 1.07998 * 120.00307 * 119.99962 * 4 2 1 6 6 C 1.37882 * 119.99700 * 299.99668 * 4 2 1 7 7 N 1.31510 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99807 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47197 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47005 * 120.00256 * 8 6 4 11 11 H 1.48497 * 109.47126 * 240.00315 * 8 6 4 12 12 N 1.46902 * 109.47198 * 240.00330 * 2 1 3 13 13 C 1.46900 * 110.99702 * 306.04572 * 12 2 1 14 14 C 1.37816 * 111.00173 * 69.99573 * 12 2 1 15 15 C 1.36854 * 120.52043 * 0.02562 * 14 12 2 16 16 C 1.40358 * 119.04748 * 179.97438 * 15 14 12 17 17 C 1.48220 * 119.89799 * 180.02562 * 16 15 14 18 18 C 1.39430 * 120.12643 * 359.75890 * 17 16 15 19 19 C 1.37996 * 119.86046 * 179.79176 * 18 17 16 20 20 C 1.38339 * 120.13430 * 0.46033 * 19 18 17 21 21 C 1.38333 * 120.25856 * 359.79511 * 20 19 18 22 22 C 1.37996 * 120.13274 * 359.96899 * 21 20 19 23 23 N 1.32511 * 120.19853 * 0.05546 * 16 15 14 24 24 C 1.33634 * 120.98710 * 359.96156 * 23 16 15 25 25 N 1.32921 * 132.38009 * 179.97438 * 24 23 16 26 26 C 1.32722 * 109.72218 * 180.02562 * 25 24 23 27 27 N 1.31062 * 109.64830 * 0.02562 * 26 25 24 28 28 N 1.36638 * 120.52464 * 179.97438 * 14 12 2 29 29 H 1.09004 * 109.47625 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47030 * 299.99860 * 1 2 3 31 31 H 1.08999 * 109.47397 * 59.99734 * 1 2 3 32 32 H 0.97005 * 120.00008 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47143 * 183.95075 * 13 12 2 34 34 H 1.09003 * 109.47055 * 303.95442 * 13 12 2 35 35 H 1.08999 * 109.47395 * 63.95572 * 13 12 2 36 36 H 1.07995 * 120.47753 * 359.97438 * 15 14 12 37 37 H 1.07991 * 120.07115 * 0.02562 * 18 17 16 38 38 H 1.08003 * 119.93350 * 180.23525 * 19 18 17 39 39 H 1.07999 * 119.86717 * 179.76048 * 20 19 18 40 40 H 1.08006 * 119.93149 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.06643 * 180.02562 * 22 21 20 42 42 H 1.08001 * 125.17028 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1464 -2.2871 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5868 4.8160 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7693 0.0484 -2.3343 15 6 1.1404 1.2608 -2.2481 16 6 0.9014 1.9897 -3.4235 17 6 0.2221 3.3052 -3.3519 18 6 -0.1840 3.8170 -2.1202 19 6 -0.8120 5.0442 -2.0594 20 6 -1.0475 5.7620 -3.2184 21 6 -0.6515 5.2568 -4.4438 22 6 -0.0182 4.0329 -4.5166 23 7 1.2807 1.5051 -4.5970 24 6 1.8948 0.3216 -4.6867 25 7 2.3630 -0.3688 -5.7216 26 6 2.8960 -1.5074 -5.2962 27 7 2.7883 -1.5843 -3.9922 28 7 2.1460 -0.4154 -3.5631 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.7088 1.1612 3.4844 33 1 1.8663 -2.5520 -2.1650 34 1 1.6465 -2.5987 -0.3992 35 1 0.3555 -1.9520 -1.4400 36 1 0.8324 1.6512 -1.2894 37 1 -0.0040 3.2559 -1.2152 38 1 -1.1237 5.4435 -1.1056 39 1 -1.5428 6.7203 -3.1662 40 1 -0.8384 5.8215 -5.3453 41 1 0.2908 3.6397 -5.4739 42 1 3.3494 -2.2565 -5.9284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080760066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:16 Heat of formation + Delta-G solvation = 180.833716 kcal Electronic energy + Delta-G solvation = -27138.627709 eV Core-core repulsion = 23507.843324 eV Total energy + Delta-G solvation = -3630.784384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.99099 -41.11663 -40.13677 -38.53633 -35.64740 -34.25175 -33.37952 -32.15829 -31.40165 -31.10182 -30.60520 -27.62336 -27.39228 -25.45730 -25.34435 -23.33569 -23.24118 -22.51024 -21.38002 -19.55409 -18.99920 -18.59763 -17.88812 -17.73406 -17.37330 -16.70414 -16.27308 -15.99411 -15.63414 -15.50752 -15.41932 -15.09762 -14.66458 -14.51611 -14.31983 -14.04691 -13.78948 -13.40629 -13.28131 -13.13290 -13.12753 -12.85168 -12.68966 -12.52640 -12.26275 -12.20463 -12.09658 -11.98206 -11.27113 -11.21115 -11.05694 -11.02819 -10.60627 -10.45238 -9.85965 -9.55019 -9.14782 -8.21721 -6.32951 -0.91906 -0.36166 0.50685 0.56558 0.68708 1.41264 1.45883 1.54812 1.56550 2.12802 2.28786 2.35673 2.57514 2.97549 3.03220 3.10207 3.43739 3.69430 3.89772 3.96970 4.10793 4.16647 4.24435 4.29856 4.38336 4.43126 4.55321 4.61544 4.65166 4.76556 4.78865 4.81381 4.87237 4.99250 5.12788 5.17803 5.24761 5.31510 5.51420 5.56054 5.57017 5.59198 5.62170 5.76355 6.03973 6.07776 6.21158 6.42172 6.72208 6.86211 7.35710 8.84787 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.005075 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.262700 B = 5516.174515 C = 8116.289191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.216 3.784 3 H 0.037 0.963 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.480 5.480 13 C 0.038 3.962 14 C 0.404 3.596 15 C -0.291 4.291 16 C 0.297 3.703 17 C -0.086 4.086 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.086 4.086 21 C -0.129 4.129 22 C -0.076 4.076 23 N -0.509 5.509 24 C 0.454 3.546 25 N -0.561 5.561 26 C 0.253 3.747 27 N -0.361 5.361 28 N -0.349 5.349 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.268 0.732 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.188 0.812 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.131 0.869 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 6.590 -9.826 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.112 3.888 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.192 5.192 13 C -0.106 4.106 14 C 0.184 3.816 15 C -0.320 4.320 16 C 0.141 3.859 17 C -0.087 4.087 18 C -0.109 4.109 19 C -0.146 4.146 20 C -0.105 4.105 21 C -0.146 4.146 22 C -0.095 4.095 23 N -0.230 5.230 24 C 0.093 3.907 25 N -0.297 5.297 26 C -0.048 4.048 27 N -0.192 5.192 28 N -0.132 5.132 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.205 0.795 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.178 0.822 40 H 0.174 0.826 41 H 0.149 0.851 42 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -4.376 6.233 -10.444 12.926 hybrid contribution 0.122 -0.955 1.734 1.983 sum -4.254 5.278 -8.710 11.037 Atomic orbital electron populations 1.22478 0.97510 1.00847 1.02193 1.19532 0.91942 0.93874 0.83437 0.94520 1.21143 1.32218 1.13274 0.90123 0.92418 1.25472 0.94890 0.95596 1.01201 1.69913 1.36478 1.23219 1.24691 0.85500 0.78164 0.78570 0.79362 1.19797 1.20728 1.20303 1.58273 1.54052 1.05856 1.00988 1.22446 0.97190 0.86482 1.04484 1.19321 0.87598 0.92959 0.81714 1.22214 1.10026 0.96756 1.03037 1.20373 0.86770 0.92554 0.86245 1.18377 1.03206 0.91364 0.95754 1.21488 0.96452 0.96817 0.96164 1.21433 0.98834 0.93777 1.00508 1.21789 0.96595 1.00406 0.91672 1.21491 0.98421 0.95082 0.99654 1.21479 0.95882 0.94612 0.97526 1.67927 1.19345 1.08987 1.26762 1.23023 0.94723 0.90309 0.82607 1.70958 1.24971 1.08349 1.25418 1.27147 0.93183 0.94327 0.90128 1.78360 1.23749 1.02324 1.14746 1.48857 1.40212 1.16874 1.07229 0.94190 0.89620 0.93701 0.92272 0.90066 0.89098 0.93840 0.79546 0.85552 0.83129 0.82195 0.82650 0.85141 0.70969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.14 7.67 71.98 0.55 -6.59 16 2 C 0.22 9.77 1.84 44.16 0.08 9.85 16 3 H 0.04 1.80 6.68 -2.39 -0.02 1.78 16 4 C -0.53 -26.35 7.91 25.60 0.20 -26.15 16 5 H 0.06 2.94 7.12 -2.91 -0.02 2.92 16 6 C 0.03 1.46 5.30 84.66 0.45 1.91 16 7 N -0.90 -45.53 11.32 21.45 0.24 -45.29 16 8 Si 0.96 40.17 29.54 68.60 2.03 42.20 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 12 N -0.48 -20.29 4.77 -706.39 -3.37 -23.66 16 13 C 0.04 1.46 8.51 127.69 1.09 2.55 16 14 C 0.40 16.26 6.22 131.61 0.82 17.08 16 15 C -0.29 -10.73 6.66 22.46 0.15 -10.58 16 16 C 0.30 10.30 6.76 42.21 0.29 10.59 16 17 C -0.09 -2.46 5.88 -20.05 -0.12 -2.57 16 18 C -0.09 -2.28 9.43 22.50 0.21 -2.07 16 19 C -0.13 -2.46 10.03 22.24 0.22 -2.24 16 20 C -0.09 -1.35 10.04 22.32 0.22 -1.12 16 21 C -0.13 -2.27 10.03 22.23 0.22 -2.04 16 22 C -0.08 -1.85 9.58 22.50 0.22 -1.63 16 23 N -0.51 -19.13 9.56 -187.15 -1.79 -20.92 16 24 C 0.45 17.96 8.99 261.62 2.35 20.31 16 25 N -0.56 -20.49 11.26 -203.50 -2.29 -22.78 16 26 C 0.25 7.68 12.98 180.82 2.35 10.03 16 27 N -0.36 -13.18 10.89 -61.36 -0.67 -13.85 16 28 N -0.35 -13.88 3.76 -195.82 -0.74 -14.62 16 29 H 0.04 1.63 6.41 -2.39 -0.02 1.61 16 30 H 0.09 3.90 6.07 -2.39 -0.01 3.89 16 31 H 0.04 1.67 5.34 -2.39 -0.01 1.66 16 32 H 0.27 12.83 8.31 -92.70 -0.77 12.06 16 33 H 0.08 3.00 6.18 -2.39 -0.01 2.99 16 34 H 0.09 3.52 6.76 -2.39 -0.02 3.50 16 35 H 0.04 1.59 6.46 -2.39 -0.02 1.57 16 36 H 0.19 6.81 2.81 -2.91 -0.01 6.80 16 37 H 0.13 3.40 6.20 -2.92 -0.02 3.39 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 41 H 0.13 3.32 7.55 -2.91 -0.02 3.30 16 42 H 0.28 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -62.18 338.38 3.80 -58.38 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.08 Total: 23.23 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 9.31 Total: 17.32 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -8.61 Total: -141.12 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -62.18 3.80 -58.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.214 kcal (2) G-P(sol) polarization free energy of solvation -62.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds