Wall clock time and date at job start Tue Mar 31 2020 14:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46830 * 2 1 4 4 C 1.50703 * 109.47058 * 119.99279 * 2 1 3 5 5 H 1.07998 * 119.99857 * 120.00397 * 4 2 1 6 6 C 1.37880 * 120.00273 * 300.00255 * 4 2 1 7 7 N 1.31510 * 119.99794 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99963 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46489 * 90.00327 * 8 6 4 10 10 H 1.48496 * 109.47116 * 210.00271 * 8 6 4 11 11 H 1.48500 * 109.47370 * 330.00547 * 8 6 4 12 12 S 1.81400 * 109.47358 * 239.99672 * 2 1 3 13 13 C 1.76202 * 102.99687 * 169.85634 * 12 2 1 14 14 C 1.38776 * 120.10780 * 4.82319 * 13 12 2 15 15 C 1.38207 * 119.98972 * 179.97438 * 14 13 12 16 16 C 1.38294 * 120.19579 * 0.02562 * 15 14 13 17 17 C 1.38262 * 120.20383 * 359.70147 * 16 15 14 18 18 C 1.38630 * 120.01368 * 0.55180 * 17 16 15 19 19 N 1.40194 * 120.10144 * 179.74659 * 18 17 16 20 20 C 1.34774 * 119.99663 * 335.22375 * 19 18 17 21 21 O 1.21594 * 119.99998 * 354.27931 * 20 19 18 22 22 N 1.34778 * 119.99758 * 174.00772 * 20 19 18 23 23 C 1.46502 * 120.00077 * 0.27288 * 22 20 19 24 24 C 1.46501 * 119.99646 * 180.27163 * 22 20 19 25 25 C 1.53000 * 109.46805 * 90.00452 * 24 22 20 26 26 N 1.46898 * 109.46901 * 179.97438 * 25 24 22 27 27 H 1.09004 * 109.47113 * 65.06007 * 1 2 3 28 28 H 1.09007 * 109.46921 * 185.05570 * 1 2 3 29 29 H 1.09000 * 109.47700 * 305.05264 * 1 2 3 30 30 H 0.97003 * 120.00109 * 180.02562 * 7 6 4 31 31 H 1.08001 * 120.00054 * 0.02562 * 14 13 12 32 32 H 1.07994 * 119.89920 * 180.02562 * 15 14 13 33 33 H 1.07995 * 119.89581 * 179.97438 * 16 15 14 34 34 H 1.08008 * 119.99280 * 180.29344 * 17 16 15 35 35 H 0.96999 * 120.00123 * 155.22323 * 19 18 17 36 36 H 1.09001 * 109.47054 * 89.99796 * 23 22 20 37 37 H 1.08996 * 109.46865 * 209.99945 * 23 22 20 38 38 H 1.08997 * 109.47066 * 330.00032 * 23 22 20 39 39 H 1.09004 * 109.46988 * 209.99615 * 24 22 20 40 40 H 1.08994 * 109.47673 * 329.99770 * 24 22 20 41 41 H 1.08998 * 109.47049 * 299.99172 * 25 24 22 42 42 H 1.09002 * 109.47379 * 59.99847 * 25 24 22 43 43 H 1.00905 * 111.00423 * 56.04444 * 26 25 24 44 44 H 1.00906 * 111.00367 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.6296 -0.5453 4.4125 10 1 1.3430 -0.9489 5.1121 11 1 2.4859 -2.5659 3.7122 12 16 2.1347 -0.8552 -1.4811 13 6 3.8601 -0.4984 -1.4679 14 6 4.4197 0.1941 -0.4034 15 6 5.7735 0.4722 -0.3953 16 6 6.5740 0.0627 -1.4461 17 6 6.0259 -0.6328 -2.5080 18 6 4.6681 -0.9117 -2.5274 19 7 4.1096 -1.6121 -3.6058 20 6 4.7126 -1.5864 -4.8108 21 8 5.6814 -0.8739 -4.9908 22 7 4.2452 -2.3545 -5.8148 23 6 3.0780 -3.2129 -5.5980 24 6 4.9044 -2.3310 -7.1230 25 6 6.0013 -3.3969 -7.1605 26 7 6.6618 -3.3738 -8.4724 27 1 -0.3633 0.4333 -0.9319 28 1 -0.3633 -1.0237 0.0906 29 1 -0.3634 0.5902 0.8412 30 1 0.7086 1.1615 3.4844 31 1 3.7974 0.5150 0.4189 32 1 6.2075 1.0109 0.4340 33 1 7.6312 0.2829 -1.4350 34 1 6.6551 -0.9551 -3.3246 35 1 3.2892 -2.1152 -3.4847 36 1 2.1705 -2.6606 -5.8419 37 1 3.1505 -4.0929 -6.2370 38 1 3.0445 -3.5237 -4.5538 39 1 4.1712 -2.5365 -7.9030 40 1 5.3464 -1.3487 -7.2896 41 1 6.7344 -3.1914 -6.3806 42 1 5.5592 -4.3793 -6.9940 43 1 7.0240 -2.4548 -8.6788 44 1 7.3913 -4.0691 -8.5223 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415153289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:54 Heat of formation + Delta-G solvation = 4.330347 kcal Electronic energy + Delta-G solvation = -25043.549356 eV Core-core repulsion = 21508.262411 eV Total energy + Delta-G solvation = -3535.286945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68956 -38.39822 -36.36748 -34.87755 -34.30387 -33.93868 -30.63764 -30.20634 -29.44489 -28.22619 -26.36680 -25.43051 -23.20581 -22.47190 -22.04948 -21.00784 -19.74683 -18.42529 -17.25896 -16.73158 -16.48549 -16.11175 -16.00892 -15.30642 -15.15142 -14.95519 -14.36118 -14.01905 -13.86070 -13.66261 -13.49938 -13.34865 -13.15915 -13.02741 -12.65029 -12.41680 -12.22767 -11.80253 -11.62068 -11.45364 -11.33154 -11.03584 -10.89151 -10.57025 -10.45997 -10.30509 -10.11871 -9.72691 -9.46882 -9.12926 -9.08465 -8.92595 -8.86001 -8.55875 -7.76259 -6.55867 -6.17574 -4.33011 1.73581 1.95083 2.40357 2.63578 3.14282 3.19748 3.27168 3.30606 3.56553 3.84691 4.27744 4.32898 4.37613 4.72630 4.85425 4.86563 5.06848 5.21642 5.26612 5.40597 5.46420 5.53052 5.57580 5.74045 5.76726 5.96736 6.02158 6.25886 6.46895 6.53553 6.58967 6.67201 6.73253 6.74711 6.77227 6.93404 7.02797 7.04510 7.13067 7.26604 7.52691 7.53901 7.74469 7.84184 7.95649 8.48864 8.68334 9.31723 10.80643 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020119 B = 0.003250 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.383044 B = 8612.998557 C = 9348.285136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.100 3.900 3 H 0.052 0.948 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.272 1.272 12 S -0.202 6.202 13 C -0.083 4.083 14 C -0.097 4.097 15 C -0.128 4.128 16 C -0.120 4.120 17 C -0.126 4.126 18 C 0.164 3.836 19 N -0.671 5.671 20 C 0.706 3.294 21 O -0.574 6.574 22 N -0.630 5.630 23 C 0.074 3.926 24 C 0.136 3.864 25 C 0.044 3.956 26 N -0.849 5.849 27 H 0.020 0.980 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.159 0.841 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.343 0.657 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -6.646 -15.023 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 S 0.044 5.956 13 C -0.199 4.199 14 C -0.121 4.121 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.147 4.147 18 C 0.063 3.937 19 N -0.319 5.319 20 C 0.408 3.592 21 O -0.452 6.452 22 N -0.368 5.368 23 C -0.070 4.070 24 C 0.012 3.988 25 C -0.088 4.088 26 N -0.379 5.379 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.176 0.824 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.247 0.753 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.155 0.845 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.804 -6.911 -16.137 18.489 hybrid contribution 1.374 0.166 2.455 2.818 sum 7.179 -6.744 -13.682 16.859 Atomic orbital electron populations 1.21648 0.95104 1.01159 1.00551 1.21088 0.95881 0.96677 0.89103 0.93028 1.21265 1.32332 1.13127 0.89275 0.91353 1.24972 0.94601 0.94847 0.98983 1.69865 1.35757 1.22514 1.24126 0.86481 0.78701 0.80288 0.82067 1.20353 1.21045 1.19620 1.84404 0.99659 1.71166 1.40367 1.21363 0.97266 1.03580 0.97678 1.21719 0.95766 0.96939 0.97651 1.21064 0.93825 1.01447 0.98559 1.20931 0.99318 0.99791 0.94135 1.21126 0.92731 1.01336 0.99554 1.17050 0.91774 0.97895 0.86959 1.42754 1.28961 1.52462 1.07701 1.15831 0.82803 0.80511 0.80073 1.90868 1.28502 1.44057 1.81742 1.46957 1.32658 1.45418 1.11782 1.21828 0.87882 0.94722 1.02518 1.21228 0.95044 0.99986 0.82565 1.22163 0.96751 0.99875 0.90016 1.58673 1.37158 1.11153 1.30907 0.96079 0.94185 0.88306 0.92455 0.82411 0.86384 0.86538 0.84174 0.75271 0.91986 0.90408 0.91200 0.89669 0.89776 0.94802 0.91048 0.84520 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 8.90 37.15 0.33 -2.49 16 2 C 0.10 2.35 2.02 -27.88 -0.06 2.30 16 3 H 0.05 1.32 7.37 -51.92 -0.38 0.93 16 4 C -0.52 -13.16 6.42 -34.44 -0.22 -13.38 16 5 H 0.07 1.78 7.71 -52.49 -0.40 1.37 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -23.32 11.37 55.43 0.63 -22.69 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 S -0.20 -4.15 19.94 -107.50 -2.14 -6.30 16 13 C -0.08 -1.69 6.11 -38.91 -0.24 -1.93 16 14 C -0.10 -1.99 8.85 -39.39 -0.35 -2.34 16 15 C -0.13 -2.29 10.04 -39.57 -0.40 -2.68 16 16 C -0.12 -2.00 10.04 -39.55 -0.40 -2.40 16 17 C -0.13 -2.25 8.72 -39.43 -0.34 -2.60 16 18 C 0.16 3.07 6.44 -83.41 -0.54 2.53 16 19 N -0.67 -10.80 5.01 -14.06 -0.07 -10.87 16 20 C 0.71 10.88 8.09 -86.92 -0.70 10.17 16 21 O -0.57 -10.35 13.10 5.28 0.07 -10.28 16 22 N -0.63 -7.22 2.87 -187.35 -0.54 -7.76 16 23 C 0.07 0.63 10.16 59.85 0.61 1.23 16 24 C 0.14 1.33 5.67 -4.04 -0.02 1.31 16 25 C 0.04 0.40 7.11 -3.83 -0.03 0.37 16 26 N -0.85 -6.36 9.62 -10.37 -0.10 -6.46 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.89 8.14 -51.92 -0.42 0.46 16 29 H 0.10 2.42 6.22 -51.93 -0.32 2.09 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.16 3.60 4.80 -52.49 -0.25 3.34 16 32 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.14 2.50 5.79 -52.48 -0.30 2.20 16 35 H 0.41 6.01 5.45 -40.82 -0.22 5.79 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 38 H 0.07 0.61 6.45 -51.93 -0.33 0.27 16 39 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.08 0.95 7.42 -51.93 -0.39 0.56 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.34 2.35 8.99 -39.29 -0.35 1.99 16 44 H 0.34 2.08 9.08 -39.29 -0.36 1.72 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -28.79 367.20 -10.34 -39.13 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.25 Total: 12.73 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.45 Total: -8.21 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.08 Total: -47.78 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.14 Total: -6.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.79 -10.34 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415153289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.464 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds