Wall clock time and date at job start Tue Mar 31 2020 14:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 S 1.81407 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.76205 * 102.99809 * 179.97438 * 4 3 2 6 6 C 1.39098 * 119.66615 * 180.02562 * 5 4 3 7 7 C 1.38449 * 119.23757 * 179.97438 * 6 5 4 8 8 C 1.38629 * 118.58685 * 0.02562 * 7 6 5 9 9 C 1.38877 * 119.27628 * 359.97438 * 8 7 6 10 10 N 1.39384 * 119.64534 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00154 * 174.91699 * 10 9 8 12 12 O 1.21577 * 119.99988 * 5.09351 * 11 10 9 13 13 N 1.34784 * 120.00341 * 185.09037 * 11 10 9 14 14 C 1.46497 * 119.99885 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47240 * 324.99546 * 14 13 11 16 16 C 1.50702 * 109.46515 * 204.99949 * 14 13 11 17 17 H 1.07997 * 120.00185 * 0.02562 * 16 14 13 18 18 C 1.37887 * 119.99835 * 179.97438 * 16 14 13 19 19 N 1.31513 * 119.99543 * 0.02562 * 18 16 14 20 20 Si 1.86792 * 120.00052 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47461 * 59.99933 * 20 18 16 22 22 H 1.48497 * 109.47181 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46923 * 299.99891 * 20 18 16 24 24 C 1.52989 * 109.47293 * 85.00219 * 14 13 11 25 25 C 1.53005 * 109.47128 * 294.99375 * 24 14 13 26 26 N 1.32440 * 120.70530 * 359.74496 * 9 8 7 27 27 H 1.08995 * 109.47223 * 60.00133 * 1 2 3 28 28 H 1.09002 * 109.46575 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46725 * 299.99775 * 1 2 3 30 30 H 1.09001 * 109.47216 * 240.00409 * 2 1 3 31 31 H 1.09001 * 109.47330 * 120.00316 * 2 1 3 32 32 H 1.09000 * 109.47134 * 60.00476 * 3 2 1 33 33 H 1.09001 * 109.47274 * 300.00351 * 3 2 1 34 34 H 1.07997 * 120.38334 * 359.96044 * 6 5 4 35 35 H 1.07992 * 120.70376 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.36060 * 179.97438 * 8 7 6 37 37 H 0.97006 * 119.99944 * 354.91853 * 10 9 8 38 38 H 0.97000 * 119.99586 * 0.02562 * 13 11 10 39 39 H 0.97005 * 119.99764 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.47560 * 54.99763 * 24 14 13 41 41 H 1.09006 * 109.47656 * 175.00184 * 24 14 13 42 42 H 1.08997 * 109.47217 * 300.00599 * 25 24 14 43 43 H 1.08998 * 109.46968 * 60.00169 * 25 24 14 44 44 H 1.09006 * 109.46989 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4425 0.0008 5 6 4.2504 3.1594 -0.0001 6 6 5.5829 3.5584 -0.0003 7 6 5.8842 4.9097 -0.0015 8 6 4.8405 5.8220 -0.0019 9 6 3.5319 5.3569 -0.0017 10 7 2.4766 6.2674 -0.0026 11 6 1.2069 5.8273 -0.1058 12 8 0.9752 4.6338 -0.1047 13 7 0.1939 6.7103 -0.2101 14 6 -1.1862 6.2318 -0.3217 15 1 -1.2047 5.3070 -0.8983 16 6 -2.0244 7.2739 -1.0165 17 1 -1.5740 8.1996 -1.3427 18 6 -3.3662 7.0448 -1.2366 19 7 -3.9145 5.9172 -0.8398 20 14 -4.4050 8.3361 -2.0985 21 1 -3.8566 8.5877 -3.4553 22 1 -5.8040 7.8512 -2.2115 23 1 -4.3803 9.5962 -1.3130 24 6 -1.7507 5.9725 1.0764 25 6 -0.9775 4.8278 1.7344 26 7 3.2761 4.0575 -0.0061 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 6.3734 2.8226 0.0007 35 1 6.9105 5.2458 -0.0021 36 1 5.0427 6.8829 -0.0025 37 1 2.6560 7.2179 0.0709 38 1 0.3787 7.6625 -0.2113 39 1 -4.8585 5.7562 -0.9944 40 1 -1.6507 6.8735 1.6816 41 1 -2.8038 5.7020 0.9988 42 1 -1.0775 3.9267 1.1292 43 1 0.0755 5.0981 1.8121 44 1 -1.3794 4.6433 2.7307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603063748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:26 Heat of formation + Delta-G solvation = 1.989914 kcal Electronic energy + Delta-G solvation = -25486.360645 eV Core-core repulsion = 21950.972211 eV Total energy + Delta-G solvation = -3535.388433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.49786 -38.88030 -35.52909 -34.52660 -34.20535 -32.52099 -32.25310 -31.00743 -29.56700 -27.09857 -26.88977 -24.08492 -23.55932 -22.74151 -21.43051 -20.63841 -19.50576 -18.50878 -18.02764 -16.23081 -16.19341 -16.06236 -15.42972 -15.38653 -15.17596 -14.92216 -14.32881 -14.06751 -13.87232 -13.45683 -13.24472 -13.11202 -12.65596 -12.46370 -12.28767 -12.19561 -11.59269 -11.54157 -11.26186 -11.05302 -11.00126 -10.89212 -10.77720 -10.56636 -10.35385 -10.29030 -10.17607 -10.00097 -9.78433 -9.58980 -9.07041 -8.80291 -8.50805 -8.47370 -7.79144 -7.38170 -6.14014 -4.23242 1.08074 1.40180 1.62907 2.39981 3.00462 3.23906 3.29648 3.31089 3.63476 4.15589 4.29928 4.57837 4.86487 4.97401 5.04544 5.07385 5.14389 5.17594 5.30712 5.33879 5.39436 5.74133 5.80581 5.85989 5.93611 6.16859 6.21207 6.27889 6.29698 6.40346 6.44626 6.48183 6.65490 6.81133 6.97445 7.10954 7.26860 7.37811 7.46255 7.62264 7.76487 7.89457 8.13734 8.18239 8.72801 8.86481 9.29637 9.46377 10.91231 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003841 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.466078 B = 7288.488760 C = 8861.514830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.081 4.081 4 S -0.101 6.101 5 C 0.160 3.840 6 C -0.199 4.199 7 C -0.031 4.031 8 C -0.230 4.230 9 C 0.408 3.592 10 N -0.676 5.676 11 C 0.681 3.319 12 O -0.530 6.530 13 N -0.721 5.721 14 C 0.290 3.710 15 H 0.049 0.951 16 C -0.535 4.535 17 H 0.060 0.940 18 C 0.068 3.932 19 N -0.881 5.881 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.128 4.128 25 C -0.133 4.133 26 N -0.473 5.473 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.408 0.592 38 H 0.383 0.617 39 H 0.265 0.735 40 H 0.029 0.971 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.570 -3.934 2.803 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.229 4.229 4 S 0.141 5.859 5 C -0.091 4.091 6 C -0.228 4.228 7 C -0.059 4.059 8 C -0.257 4.257 9 C 0.171 3.829 10 N -0.325 5.325 11 C 0.381 3.619 12 O -0.402 6.402 13 N -0.374 5.374 14 C 0.188 3.812 15 H 0.067 0.933 16 C -0.574 4.574 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.518 5.518 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.167 4.167 25 C -0.191 4.191 26 N -0.192 5.192 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.244 0.756 38 H 0.215 0.785 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 15.743 -6.433 2.771 17.231 hybrid contribution -0.369 3.251 -0.381 3.294 sum 15.374 -3.183 2.390 15.881 Atomic orbital electron populations 1.21717 0.94107 1.01520 1.03114 1.21316 0.96880 0.94198 1.02338 1.23510 0.90888 1.00315 1.08217 1.85162 1.10155 0.99338 1.91210 1.22844 0.91325 0.98002 0.96954 1.21444 0.95567 0.96757 1.08982 1.21142 0.98997 0.92025 0.93701 1.21339 0.91335 1.01063 1.11977 1.18168 0.85849 0.87443 0.91426 1.43097 1.04842 1.08950 1.75569 1.16222 0.79662 0.86684 0.79355 1.90968 1.81724 1.13539 1.53983 1.45873 1.07566 1.07714 1.76240 1.18673 0.73389 0.95990 0.93169 0.93293 1.21185 0.94088 1.03204 1.38886 0.92224 1.24863 0.97608 0.95673 0.95420 1.69884 1.12765 1.23564 1.45621 0.86520 0.79208 0.81421 0.80008 1.20222 1.21112 1.20194 1.21956 1.02906 0.95249 0.96588 1.21799 0.99245 1.00160 0.97875 1.68114 1.33340 1.00215 1.17490 0.92021 0.92548 0.92138 0.91561 0.91607 0.88536 0.88328 0.84823 0.84438 0.84827 0.75606 0.78489 0.92499 0.95206 0.88325 0.93139 0.94302 0.96176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.48 16 2 C -0.11 -1.34 5.94 -26.73 -0.16 -1.50 16 3 C -0.08 -1.24 5.20 37.16 0.19 -1.05 16 4 S -0.10 -1.42 21.91 -107.50 -2.36 -3.78 16 5 C 0.16 2.46 7.00 -16.94 -0.12 2.34 16 6 C -0.20 -2.43 9.83 -39.18 -0.39 -2.82 16 7 C -0.03 -0.32 10.16 -39.36 -0.40 -0.72 16 8 C -0.23 -2.67 9.93 -39.20 -0.39 -3.06 16 9 C 0.41 6.36 7.42 -154.71 -1.15 5.21 16 10 N -0.68 -10.36 5.39 -15.84 -0.09 -10.45 16 11 C 0.68 13.47 7.09 -86.91 -0.62 12.85 16 12 O -0.53 -12.13 11.73 5.30 0.06 -12.07 16 13 N -0.72 -14.52 5.03 -59.82 -0.30 -14.83 16 14 C 0.29 7.12 2.24 -69.09 -0.15 6.97 16 15 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 16 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 19 N -0.88 -24.31 11.29 55.43 0.63 -23.68 16 20 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 25 C -0.13 -2.98 8.51 37.16 0.32 -2.66 16 26 N -0.47 -8.38 6.94 -11.22 -0.08 -8.46 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.41 4.58 8.72 -40.82 -0.36 4.23 16 38 H 0.38 6.61 8.56 -40.82 -0.35 6.26 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 42 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 43 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -30.71 373.65 -11.28 -41.99 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.72 Total: 11.90 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -3.03 Total: -1.60 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.16 Total: -57.41 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.36 Total: -3.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.71 -11.28 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603063748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.975 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds