Wall clock time and date at job start Tue Mar 31 2020 14:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 S 1.81407 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.76205 * 102.99809 * 179.97438 * 4 3 2 6 6 C 1.39098 * 119.66615 * 180.02562 * 5 4 3 7 7 C 1.38449 * 119.23757 * 179.97438 * 6 5 4 8 8 C 1.38629 * 118.58685 * 0.02562 * 7 6 5 9 9 C 1.38877 * 119.27628 * 359.97438 * 8 7 6 10 10 N 1.39384 * 119.64534 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00154 * 174.91699 * 10 9 8 12 12 O 1.21577 * 119.99988 * 5.09351 * 11 10 9 13 13 N 1.34784 * 120.00341 * 185.09037 * 11 10 9 14 14 C 1.46497 * 119.99885 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47240 * 324.99546 * 14 13 11 16 16 C 1.50702 * 109.46515 * 204.99949 * 14 13 11 17 17 H 1.07997 * 120.00185 * 0.02562 * 16 14 13 18 18 C 1.37887 * 119.99835 * 179.97438 * 16 14 13 19 19 N 1.31513 * 119.99543 * 0.02562 * 18 16 14 20 20 Si 1.86792 * 120.00052 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47461 * 59.99933 * 20 18 16 22 22 H 1.48497 * 109.47181 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46923 * 299.99891 * 20 18 16 24 24 C 1.52989 * 109.47293 * 85.00219 * 14 13 11 25 25 C 1.53005 * 109.47128 * 294.99375 * 24 14 13 26 26 N 1.32440 * 120.70530 * 359.74496 * 9 8 7 27 27 H 1.08995 * 109.47223 * 60.00133 * 1 2 3 28 28 H 1.09002 * 109.46575 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46725 * 299.99775 * 1 2 3 30 30 H 1.09001 * 109.47216 * 240.00409 * 2 1 3 31 31 H 1.09001 * 109.47330 * 120.00316 * 2 1 3 32 32 H 1.09000 * 109.47134 * 60.00476 * 3 2 1 33 33 H 1.09001 * 109.47274 * 300.00351 * 3 2 1 34 34 H 1.07997 * 120.38334 * 359.96044 * 6 5 4 35 35 H 1.07992 * 120.70376 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.36060 * 179.97438 * 8 7 6 37 37 H 0.97006 * 119.99944 * 354.91853 * 10 9 8 38 38 H 0.97000 * 119.99586 * 0.02562 * 13 11 10 39 39 H 0.97005 * 119.99764 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.47560 * 54.99763 * 24 14 13 41 41 H 1.09006 * 109.47656 * 175.00184 * 24 14 13 42 42 H 1.08997 * 109.47217 * 300.00599 * 25 24 14 43 43 H 1.08998 * 109.46968 * 60.00169 * 25 24 14 44 44 H 1.09006 * 109.46989 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4425 0.0008 5 6 4.2504 3.1594 -0.0001 6 6 5.5829 3.5584 -0.0003 7 6 5.8842 4.9097 -0.0015 8 6 4.8405 5.8220 -0.0019 9 6 3.5319 5.3569 -0.0017 10 7 2.4766 6.2674 -0.0026 11 6 1.2069 5.8273 -0.1058 12 8 0.9752 4.6338 -0.1047 13 7 0.1939 6.7103 -0.2101 14 6 -1.1862 6.2318 -0.3217 15 1 -1.2047 5.3070 -0.8983 16 6 -2.0244 7.2739 -1.0165 17 1 -1.5740 8.1996 -1.3427 18 6 -3.3662 7.0448 -1.2366 19 7 -3.9145 5.9172 -0.8398 20 14 -4.4050 8.3361 -2.0985 21 1 -3.8566 8.5877 -3.4553 22 1 -5.8040 7.8512 -2.2115 23 1 -4.3803 9.5962 -1.3130 24 6 -1.7507 5.9725 1.0764 25 6 -0.9775 4.8278 1.7344 26 7 3.2761 4.0575 -0.0061 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 6.3734 2.8226 0.0007 35 1 6.9105 5.2458 -0.0021 36 1 5.0427 6.8829 -0.0025 37 1 2.6560 7.2179 0.0709 38 1 0.3787 7.6625 -0.2113 39 1 -4.8585 5.7562 -0.9944 40 1 -1.6507 6.8735 1.6816 41 1 -2.8038 5.7020 0.9988 42 1 -1.0775 3.9267 1.1292 43 1 0.0755 5.0981 1.8121 44 1 -1.3794 4.6433 2.7307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603063748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:25 Heat of formation + Delta-G solvation = -16.302602 kcal Electronic energy + Delta-G solvation = -25487.153868 eV Core-core repulsion = 21950.972211 eV Total energy + Delta-G solvation = -3536.181656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73888 -40.26383 -37.21534 -35.69191 -35.64299 -34.28799 -33.38253 -32.77960 -30.81419 -28.80844 -28.25897 -25.38502 -24.94664 -24.22078 -22.60817 -22.12464 -21.29524 -19.92083 -19.36593 -17.96142 -17.47010 -16.99674 -16.99260 -16.67928 -16.53503 -16.35501 -15.85523 -15.35439 -15.25369 -14.95848 -14.55032 -14.44756 -14.07657 -13.94436 -13.62208 -13.50660 -13.20639 -13.17225 -12.89310 -12.66620 -12.60155 -12.20380 -12.12427 -12.08635 -12.00547 -11.77999 -11.56256 -11.49124 -11.20611 -11.05004 -10.95682 -10.53141 -10.07505 -9.80110 -9.44375 -8.47101 -8.15711 -6.32788 0.05764 0.42973 0.55660 1.22263 1.44439 1.46318 1.53770 1.70623 2.29120 2.41840 2.92524 3.13729 3.32134 3.78953 3.87703 3.91071 4.08757 4.22452 4.30199 4.31489 4.47192 4.48334 4.48738 4.55876 4.73891 4.75066 4.85566 4.95173 5.06146 5.07012 5.11019 5.22545 5.24603 5.32444 5.35202 5.44600 5.52451 5.61107 5.73990 5.81653 5.88830 6.11656 6.17846 6.74960 6.87938 7.34034 7.39739 7.82629 8.89468 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003841 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.466078 B = 7288.488760 C = 8861.514830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.072 4.072 4 S -0.082 6.082 5 C 0.120 3.880 6 C -0.189 4.189 7 C -0.022 4.022 8 C -0.208 4.208 9 C 0.369 3.631 10 N -0.662 5.662 11 C 0.679 3.321 12 O -0.568 6.568 13 N -0.718 5.718 14 C 0.302 3.698 15 H -0.004 1.004 16 C -0.548 4.548 17 H 0.071 0.929 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.969 3.031 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.119 4.119 25 C -0.114 4.114 26 N -0.518 5.518 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.159 0.841 35 H 0.188 0.812 36 H 0.173 0.827 37 H 0.428 0.572 38 H 0.399 0.601 39 H 0.265 0.735 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.024 0.976 43 H 0.038 0.962 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.420 -2.334 2.956 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.221 4.221 4 S 0.161 5.839 5 C -0.130 4.130 6 C -0.217 4.217 7 C -0.049 4.049 8 C -0.234 4.234 9 C 0.133 3.867 10 N -0.313 5.313 11 C 0.379 3.621 12 O -0.442 6.442 13 N -0.372 5.372 14 C 0.198 3.802 15 H 0.014 0.986 16 C -0.587 4.587 17 H 0.089 0.911 18 C -0.183 4.183 19 N -0.552 5.552 20 Si 0.794 3.206 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.158 4.158 25 C -0.172 4.172 26 N -0.237 5.237 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.177 0.823 35 H 0.205 0.795 36 H 0.191 0.809 37 H 0.267 0.733 38 H 0.234 0.766 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 18.670 -4.792 2.933 19.497 hybrid contribution -1.089 2.747 -0.431 2.986 sum 17.581 -2.045 2.502 17.875 Atomic orbital electron populations 1.21709 0.94579 1.02648 1.01362 1.21321 0.96418 0.92411 1.03814 1.23285 0.92665 1.01444 1.04740 1.84823 1.07908 0.99691 1.91520 1.23180 0.92537 0.97936 0.99324 1.21866 0.94564 0.98563 1.06678 1.21739 1.00953 0.90770 0.91473 1.21783 0.89452 1.03392 1.08822 1.18602 0.87155 0.87041 0.93870 1.42694 1.03206 1.10135 1.75279 1.16354 0.80870 0.86011 0.78877 1.90965 1.82740 1.15184 1.55289 1.45473 1.06318 1.08636 1.76805 1.18178 0.75676 0.93746 0.92587 0.98632 1.21536 0.94541 1.03668 1.38930 0.91065 1.25740 0.98939 0.97578 0.96047 1.70047 1.12938 1.25467 1.46720 0.85443 0.77154 0.79065 0.78929 1.19800 1.21242 1.18866 1.21791 1.01384 0.95980 0.96662 1.21580 0.99023 0.98410 0.98143 1.67902 1.35371 1.01811 1.18585 0.94042 0.89860 0.93657 0.90101 0.89839 0.91695 0.92029 0.82323 0.79516 0.80935 0.73254 0.76610 0.92628 0.94218 0.90996 0.95677 0.94332 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.10 -2.60 5.94 30.60 0.18 -2.41 16 3 C -0.07 -2.41 5.20 71.98 0.37 -2.04 16 4 S -0.08 -2.33 21.91 -56.49 -1.24 -3.57 16 5 C 0.12 3.66 7.00 84.80 0.59 4.25 16 6 C -0.19 -4.08 9.83 22.53 0.22 -3.85 16 7 C -0.02 -0.36 10.16 22.41 0.23 -0.13 16 8 C -0.21 -4.07 9.93 22.52 0.22 -3.85 16 9 C 0.37 11.17 7.42 132.86 0.99 12.16 16 10 N -0.66 -19.99 5.39 -322.28 -1.74 -21.72 16 11 C 0.68 27.75 7.09 179.05 1.27 29.02 16 12 O -0.57 -27.75 11.73 -3.96 -0.05 -27.80 16 13 N -0.72 -29.58 5.03 -461.44 -2.32 -31.90 16 14 C 0.30 15.49 2.24 44.24 0.10 15.59 16 15 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 16 C -0.55 -28.85 8.73 25.60 0.22 -28.62 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C 0.02 0.93 5.29 84.66 0.45 1.37 16 19 N -0.91 -52.22 11.29 21.45 0.24 -51.98 16 20 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 25 C -0.11 -5.33 8.51 71.98 0.61 -4.72 16 26 N -0.52 -18.80 6.94 -189.42 -1.31 -20.11 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.43 8.86 8.72 -92.70 -0.81 8.05 16 38 H 0.40 13.62 8.56 -92.71 -0.79 12.83 16 39 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 4.00 5.95 -2.38 -0.01 3.99 16 42 H 0.02 1.25 7.84 -2.39 -0.02 1.24 16 43 H 0.04 1.78 5.65 -2.39 -0.01 1.76 16 44 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -72.50 373.65 1.37 -71.13 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.58 Total: 34.20 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.34 Total: 7.83 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -5.13 Total: -125.72 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.05 Total: -27.80 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -1.24 Total: -3.57 kcal Total: -72.50 1.37 -71.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603063748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.831 kcal (2) G-P(sol) polarization free energy of solvation -72.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds