Wall clock time and date at job start Tue Mar 31 2020 14:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46887 * 2 1 4 4 S 1.81409 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.76198 * 102.99789 * 180.02562 * 4 3 2 6 6 C 1.39106 * 119.66304 * 179.97438 * 5 4 3 7 7 C 1.38441 * 119.23363 * 179.97438 * 6 5 4 8 8 C 1.38626 * 118.59141 * 0.02562 * 7 6 5 9 9 C 1.38868 * 119.27643 * 359.97438 * 8 7 6 10 10 N 1.39387 * 119.65014 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00494 * 185.16379 * 10 9 8 12 12 O 1.21580 * 119.99806 * 354.91957 * 11 10 9 13 13 N 1.34774 * 120.00066 * 174.91778 * 11 10 9 14 14 C 1.46500 * 120.00430 * 0.02562 * 13 11 10 15 15 C 1.46498 * 119.99608 * 180.02562 * 13 11 10 16 16 H 1.08998 * 109.47351 * 359.97438 * 15 13 11 17 17 C 1.53006 * 109.47152 * 120.00290 * 15 13 11 18 18 C 1.50702 * 109.46958 * 239.99867 * 15 13 11 19 19 H 1.07996 * 120.00038 * 359.97438 * 18 15 13 20 20 C 1.37881 * 119.99742 * 180.02562 * 18 15 13 21 21 N 1.31506 * 120.00358 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99792 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47237 * 89.99864 * 22 20 18 24 24 H 1.48498 * 109.46959 * 210.00108 * 22 20 18 25 25 H 1.48504 * 109.46935 * 329.99691 * 22 20 18 26 26 N 1.32443 * 120.70572 * 0.27934 * 9 8 7 27 27 H 1.08998 * 109.47393 * 300.00080 * 1 2 3 28 28 H 1.08998 * 109.47687 * 60.00163 * 1 2 3 29 29 H 1.09006 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47205 * 240.00202 * 2 1 3 31 31 H 1.08998 * 109.47687 * 119.99837 * 2 1 3 32 32 H 1.08998 * 109.47101 * 60.00746 * 3 2 1 33 33 H 1.08997 * 109.47195 * 299.99974 * 3 2 1 34 34 H 1.08000 * 120.38404 * 0.02633 * 6 5 4 35 35 H 1.08004 * 120.70464 * 179.97438 * 7 6 5 36 36 H 1.08003 * 120.36298 * 180.02562 * 8 7 6 37 37 H 0.97002 * 120.00032 * 5.17262 * 10 9 8 38 38 H 1.09007 * 109.46892 * 270.00186 * 14 13 11 39 39 H 1.09003 * 109.46909 * 29.99483 * 14 13 11 40 40 H 1.08989 * 109.47252 * 149.99955 * 14 13 11 41 41 H 1.09004 * 109.47242 * 179.97438 * 17 15 13 42 42 H 1.08998 * 109.47287 * 59.99599 * 17 15 13 43 43 H 1.09003 * 109.46509 * 299.99658 * 17 15 13 44 44 H 0.97007 * 120.00407 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8540 1.4426 -0.0008 5 6 4.2502 3.1595 0.0001 6 6 5.5828 3.5584 0.0003 7 6 5.8840 4.9097 0.0004 8 6 4.8403 5.8220 0.0009 9 6 3.5318 5.3570 0.0007 10 7 2.4764 6.2675 0.0017 11 6 1.2068 5.8275 0.1065 12 8 0.9752 4.6339 0.1071 13 7 0.1940 6.7105 0.2106 14 6 0.4730 8.1487 0.2093 15 6 -1.1859 6.2322 0.3251 16 1 -1.1953 5.1424 0.3078 17 6 -1.7898 6.7271 1.6410 18 6 -1.9978 6.7595 -0.8298 19 1 -1.5326 7.3884 -1.5743 20 6 -3.3349 6.4399 -0.9353 21 7 -3.9016 5.6745 -0.0284 22 14 -4.3412 7.0930 -2.3672 23 1 -4.2773 6.1309 -3.4967 24 1 -5.7537 7.2643 -1.9422 25 1 -3.7924 8.4029 -2.8011 26 7 3.2759 4.0575 0.0056 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 6.3733 2.8226 -0.0005 35 1 6.9104 5.2459 0.0010 36 1 5.0426 6.8829 0.0006 37 1 2.6557 7.2178 -0.0732 38 1 0.6329 8.4887 1.2326 39 1 1.3670 8.3449 -0.3826 40 1 -0.3733 8.6826 -0.2228 41 1 -2.8167 6.3715 1.7260 42 1 -1.7804 7.8169 1.6580 43 1 -1.2025 6.3456 2.4763 44 1 -4.8422 5.4493 -0.1028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603064848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:21 Heat of formation + Delta-G solvation = 16.489667 kcal Electronic energy + Delta-G solvation = -25417.849448 eV Core-core repulsion = 21883.089771 eV Total energy + Delta-G solvation = -3534.759677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52771 -38.94469 -35.58838 -34.50130 -34.46164 -32.81797 -32.34424 -30.19463 -28.84288 -27.06222 -26.18796 -25.23526 -24.04369 -23.42398 -21.53731 -21.03201 -19.25782 -18.48101 -17.17695 -16.42354 -16.23162 -16.05384 -15.49024 -15.28838 -15.09629 -15.00528 -14.30424 -14.03126 -13.95046 -13.37978 -13.14905 -13.06337 -12.69202 -12.54181 -12.31995 -12.27588 -11.73163 -11.55936 -11.48189 -11.07692 -11.02328 -10.93215 -10.81497 -10.70258 -10.57707 -10.28440 -10.24624 -10.18430 -9.99178 -9.74381 -9.19485 -8.79336 -8.48096 -8.43344 -7.59371 -7.36158 -6.08881 -4.16709 1.09193 1.41261 1.64695 2.41676 2.99878 3.25755 3.32591 3.34092 3.62231 4.13799 4.29237 4.43658 4.69771 4.98681 5.05685 5.10068 5.15162 5.20861 5.23119 5.33067 5.41795 5.55192 5.77167 5.82833 5.85164 5.92936 5.96359 6.17642 6.24084 6.24137 6.30217 6.32383 6.48085 6.62937 6.77851 6.86918 7.01757 7.08915 7.44557 7.61397 7.71606 7.97997 8.12230 8.21609 8.63700 8.84612 9.25437 9.50603 10.96297 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.004103 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.237171 B = 6823.232901 C = 8559.238138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.082 4.082 4 S -0.100 6.100 5 C 0.160 3.840 6 C -0.199 4.199 7 C -0.031 4.031 8 C -0.230 4.230 9 C 0.407 3.593 10 N -0.675 5.675 11 C 0.686 3.314 12 O -0.534 6.534 13 N -0.606 5.606 14 C 0.084 3.916 15 C 0.275 3.725 16 H 0.065 0.935 17 C -0.146 4.146 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.275 1.275 26 N -0.474 5.474 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.409 0.591 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.029 0.971 43 H 0.010 0.990 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.833 -1.891 1.309 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.230 4.230 4 S 0.142 5.858 5 C -0.091 4.091 6 C -0.227 4.227 7 C -0.058 4.058 8 C -0.257 4.257 9 C 0.170 3.830 10 N -0.325 5.325 11 C 0.387 3.613 12 O -0.406 6.406 13 N -0.342 5.342 14 C -0.060 4.060 15 C 0.175 3.825 16 H 0.083 0.917 17 C -0.205 4.205 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.200 1.200 26 N -0.193 5.193 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.247 0.753 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.048 0.952 43 H 0.029 0.971 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.065 -4.112 1.391 16.641 hybrid contribution -0.461 2.590 -0.837 2.760 sum 15.604 -1.522 0.555 15.688 Atomic orbital electron populations 1.21719 0.94086 1.01507 1.03187 1.21313 0.96899 0.94146 1.02329 1.23521 0.90865 1.00367 1.08261 1.85136 1.10177 0.99305 1.91192 1.22855 0.91323 0.98018 0.96911 1.21446 0.95543 0.96761 1.08981 1.21139 0.98975 0.92014 0.93693 1.21323 0.91283 1.01052 1.12048 1.18196 0.85907 0.87440 0.91421 1.43208 1.04774 1.09130 1.75342 1.16095 0.79717 0.86181 0.79294 1.90949 1.81634 1.13478 1.54511 1.47660 1.07717 1.04407 1.74391 1.21541 1.01186 0.83375 0.99905 1.18864 0.73094 0.97039 0.93543 0.91750 1.22097 1.03475 0.98760 0.96119 1.21323 0.94359 1.32018 1.08816 0.92346 1.24869 0.97566 0.94946 0.96272 1.69874 1.12389 1.36123 1.34082 0.86507 0.79288 0.79198 0.82446 1.20630 1.21111 1.19976 1.68122 1.33411 1.00275 1.17493 0.92052 0.92055 0.92545 0.91579 0.91571 0.88369 0.88479 0.84778 0.84394 0.84838 0.75311 0.93871 0.93781 0.89617 0.88773 0.95235 0.97066 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.15 0.37 -1.56 16 2 C -0.11 -1.39 5.94 -26.73 -0.16 -1.55 16 3 C -0.08 -1.31 5.20 37.16 0.19 -1.11 16 4 S -0.10 -1.45 21.91 -107.50 -2.36 -3.81 16 5 C 0.16 2.54 7.00 -16.94 -0.12 2.42 16 6 C -0.20 -2.48 9.83 -39.18 -0.39 -2.87 16 7 C -0.03 -0.33 10.16 -39.36 -0.40 -0.73 16 8 C -0.23 -2.76 9.93 -39.20 -0.39 -3.15 16 9 C 0.41 6.65 7.42 -154.71 -1.15 5.50 16 10 N -0.67 -11.11 5.27 -15.84 -0.08 -11.20 16 11 C 0.69 14.61 8.24 -86.92 -0.72 13.89 16 12 O -0.53 -13.28 13.93 5.29 0.07 -13.21 16 13 N -0.61 -12.81 2.75 -181.01 -0.50 -13.31 16 14 C 0.08 1.36 9.24 59.85 0.55 1.91 16 15 C 0.27 6.94 2.64 -69.08 -0.18 6.76 16 16 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 17 C -0.15 -3.47 8.97 37.16 0.33 -3.14 16 18 C -0.53 -14.03 7.99 -34.44 -0.28 -14.30 16 19 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -24.79 11.32 55.43 0.63 -24.17 16 22 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 N -0.47 -8.79 6.94 -11.22 -0.08 -8.86 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 33 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.41 5.15 6.39 -40.82 -0.26 4.89 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.55 6.29 -51.93 -0.33 0.23 16 40 H 0.09 1.48 7.02 -51.94 -0.36 1.12 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 42 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 43 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -32.00 374.17 -10.73 -42.73 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.62 Total: 6.57 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -2.42 Total: 3.75 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.03 Total: -57.54 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.36 Total: -3.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.00 -10.73 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603064848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.218 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds