Wall clock time and date at job start Tue Mar 31 2020 14:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46887 * 2 1 4 4 S 1.81409 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.76198 * 102.99789 * 180.02562 * 4 3 2 6 6 C 1.39106 * 119.66304 * 179.97438 * 5 4 3 7 7 C 1.38441 * 119.23363 * 179.97438 * 6 5 4 8 8 C 1.38626 * 118.59141 * 0.02562 * 7 6 5 9 9 C 1.38868 * 119.27643 * 359.97438 * 8 7 6 10 10 N 1.39387 * 119.65014 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00494 * 185.16379 * 10 9 8 12 12 O 1.21580 * 119.99806 * 354.91957 * 11 10 9 13 13 N 1.34774 * 120.00066 * 174.91778 * 11 10 9 14 14 C 1.46500 * 120.00430 * 0.02562 * 13 11 10 15 15 C 1.46498 * 119.99608 * 180.02562 * 13 11 10 16 16 H 1.08998 * 109.47351 * 359.97438 * 15 13 11 17 17 C 1.53006 * 109.47152 * 120.00290 * 15 13 11 18 18 C 1.50702 * 109.46958 * 239.99867 * 15 13 11 19 19 H 1.07996 * 120.00038 * 359.97438 * 18 15 13 20 20 C 1.37881 * 119.99742 * 180.02562 * 18 15 13 21 21 N 1.31506 * 120.00358 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99792 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47237 * 89.99864 * 22 20 18 24 24 H 1.48498 * 109.46959 * 210.00108 * 22 20 18 25 25 H 1.48504 * 109.46935 * 329.99691 * 22 20 18 26 26 N 1.32443 * 120.70572 * 0.27934 * 9 8 7 27 27 H 1.08998 * 109.47393 * 300.00080 * 1 2 3 28 28 H 1.08998 * 109.47687 * 60.00163 * 1 2 3 29 29 H 1.09006 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47205 * 240.00202 * 2 1 3 31 31 H 1.08998 * 109.47687 * 119.99837 * 2 1 3 32 32 H 1.08998 * 109.47101 * 60.00746 * 3 2 1 33 33 H 1.08997 * 109.47195 * 299.99974 * 3 2 1 34 34 H 1.08000 * 120.38404 * 0.02633 * 6 5 4 35 35 H 1.08004 * 120.70464 * 179.97438 * 7 6 5 36 36 H 1.08003 * 120.36298 * 180.02562 * 8 7 6 37 37 H 0.97002 * 120.00032 * 5.17262 * 10 9 8 38 38 H 1.09007 * 109.46892 * 270.00186 * 14 13 11 39 39 H 1.09003 * 109.46909 * 29.99483 * 14 13 11 40 40 H 1.08989 * 109.47252 * 149.99955 * 14 13 11 41 41 H 1.09004 * 109.47242 * 179.97438 * 17 15 13 42 42 H 1.08998 * 109.47287 * 59.99599 * 17 15 13 43 43 H 1.09003 * 109.46509 * 299.99658 * 17 15 13 44 44 H 0.97007 * 120.00407 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8540 1.4426 -0.0008 5 6 4.2502 3.1595 0.0001 6 6 5.5828 3.5584 0.0003 7 6 5.8840 4.9097 0.0004 8 6 4.8403 5.8220 0.0009 9 6 3.5318 5.3570 0.0007 10 7 2.4764 6.2675 0.0017 11 6 1.2068 5.8275 0.1065 12 8 0.9752 4.6339 0.1071 13 7 0.1940 6.7105 0.2106 14 6 0.4730 8.1487 0.2093 15 6 -1.1859 6.2322 0.3251 16 1 -1.1953 5.1424 0.3078 17 6 -1.7898 6.7271 1.6410 18 6 -1.9978 6.7595 -0.8298 19 1 -1.5326 7.3884 -1.5743 20 6 -3.3349 6.4399 -0.9353 21 7 -3.9016 5.6745 -0.0284 22 14 -4.3412 7.0930 -2.3672 23 1 -4.2773 6.1309 -3.4967 24 1 -5.7537 7.2643 -1.9422 25 1 -3.7924 8.4029 -2.8011 26 7 3.2759 4.0575 0.0056 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 6.3733 2.8226 -0.0005 35 1 6.9104 5.2459 0.0010 36 1 5.0426 6.8829 0.0006 37 1 2.6557 7.2178 -0.0732 38 1 0.6329 8.4887 1.2326 39 1 1.3670 8.3449 -0.3826 40 1 -0.3733 8.6826 -0.2228 41 1 -2.8167 6.3715 1.7260 42 1 -1.7804 7.8169 1.6580 43 1 -1.2025 6.3456 2.4763 44 1 -4.8422 5.4493 -0.1028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603064848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:20 Heat of formation + Delta-G solvation = -1.815541 kcal Electronic energy + Delta-G solvation = -25418.643222 eV Core-core repulsion = 21883.089771 eV Total energy + Delta-G solvation = -3535.553450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82174 -40.32908 -37.27926 -35.95877 -35.66542 -34.69260 -33.40290 -31.74149 -30.35274 -28.28552 -27.63637 -27.30816 -25.19721 -24.63271 -22.94892 -22.39989 -20.81343 -19.78038 -18.71342 -18.21366 -17.62030 -17.01103 -16.89358 -16.68952 -16.58510 -16.37279 -15.89906 -15.32466 -15.25799 -14.88863 -14.48300 -14.37238 -14.05457 -14.00189 -13.63498 -13.55680 -13.23223 -13.13271 -12.90998 -12.77089 -12.64705 -12.58839 -12.22499 -12.14461 -12.11564 -12.05165 -11.79561 -11.52012 -11.27396 -11.15651 -10.97660 -10.54514 -10.09157 -9.78716 -9.24607 -8.49236 -8.14659 -6.31090 0.03700 0.41206 0.54060 1.19425 1.40146 1.41503 1.50942 1.63701 2.20223 2.40821 2.89176 2.97113 3.13410 3.69842 3.85257 3.88471 4.04646 4.16914 4.26703 4.29387 4.34030 4.45819 4.46068 4.66518 4.70131 4.72684 4.83660 4.87096 4.93764 4.97774 5.04474 5.05876 5.09062 5.22533 5.30516 5.32795 5.40274 5.50651 5.65566 5.80839 5.89916 6.11927 6.16715 6.76483 6.77999 7.20880 7.37243 7.71708 8.89514 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.004103 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.237171 B = 6823.232901 C = 8559.238138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.074 4.074 4 S -0.077 6.077 5 C 0.118 3.882 6 C -0.187 4.187 7 C -0.021 4.021 8 C -0.206 4.206 9 C 0.365 3.635 10 N -0.660 5.660 11 C 0.680 3.320 12 O -0.583 6.583 13 N -0.614 5.614 14 C 0.080 3.920 15 C 0.282 3.718 16 H 0.007 0.993 17 C -0.129 4.129 18 C -0.537 4.537 19 H 0.060 0.940 20 C 0.017 3.983 21 N -0.917 5.917 22 Si 0.963 3.037 23 H -0.285 1.285 24 H -0.279 1.279 25 H -0.260 1.260 26 N -0.523 5.523 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.161 0.839 35 H 0.191 0.809 36 H 0.175 0.825 37 H 0.427 0.573 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.015 0.985 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.057 -0.113 0.721 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.224 4.224 4 S 0.165 5.835 5 C -0.131 4.131 6 C -0.215 4.215 7 C -0.048 4.048 8 C -0.232 4.232 9 C 0.130 3.870 10 N -0.312 5.312 11 C 0.381 3.619 12 O -0.459 6.459 13 N -0.350 5.350 14 C -0.062 4.062 15 C 0.180 3.820 16 H 0.025 0.975 17 C -0.188 4.188 18 C -0.576 4.576 19 H 0.079 0.921 20 C -0.183 4.183 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.211 1.211 24 H -0.205 1.205 25 H -0.184 1.184 26 N -0.242 5.242 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.179 0.821 35 H 0.208 0.792 36 H 0.193 0.807 37 H 0.269 0.731 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.358 -2.281 0.804 19.509 hybrid contribution -1.296 2.047 -0.635 2.504 sum 18.063 -0.234 0.169 18.065 Atomic orbital electron populations 1.21717 0.94675 1.02705 1.01284 1.21319 0.96345 0.92247 1.03948 1.23295 0.92930 1.01565 1.04566 1.84755 1.07596 0.99666 1.91512 1.23214 0.92586 0.97937 0.99395 1.21891 0.94442 0.98661 1.06480 1.21764 1.00992 0.90684 0.91326 1.21788 0.89234 1.03502 1.08718 1.18664 0.87269 0.87004 0.94062 1.42799 1.03063 1.10201 1.75130 1.16327 0.81143 0.85534 0.78945 1.90928 1.82795 1.15685 1.56456 1.47509 1.06260 1.06599 1.74618 1.21796 1.02462 0.79932 1.02055 1.18395 0.75655 0.93884 0.94076 0.97481 1.21866 1.01762 0.99658 0.95540 1.21571 0.94796 1.31944 1.09259 0.92142 1.25704 0.98740 0.95127 0.98736 1.70022 1.12630 1.37118 1.35768 0.85481 0.77869 0.78891 0.78907 1.21111 1.20482 1.18449 1.67901 1.35622 1.02015 1.18648 0.93924 0.94031 0.89657 0.89833 0.89773 0.92011 0.92181 0.82107 0.79218 0.80730 0.73116 0.91648 0.89849 0.90718 0.91335 0.93339 0.96638 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.91 71.98 0.71 -3.42 16 2 C -0.10 -2.69 5.94 30.59 0.18 -2.51 16 3 C -0.07 -2.62 5.20 71.98 0.37 -2.24 16 4 S -0.08 -2.29 21.91 -56.49 -1.24 -3.53 16 5 C 0.12 3.75 7.00 84.80 0.59 4.34 16 6 C -0.19 -4.12 9.83 22.53 0.22 -3.90 16 7 C -0.02 -0.34 10.16 22.41 0.23 -0.11 16 8 C -0.21 -4.15 9.93 22.51 0.22 -3.93 16 9 C 0.37 11.64 7.42 132.85 0.99 12.62 16 10 N -0.66 -21.36 5.27 -322.28 -1.70 -23.06 16 11 C 0.68 30.07 8.24 179.06 1.48 31.54 16 12 O -0.58 -31.45 13.93 -3.97 -0.06 -31.50 16 13 N -0.61 -26.55 2.75 -844.85 -2.33 -28.88 16 14 C 0.08 2.45 9.24 127.77 1.18 3.63 16 15 C 0.28 14.97 2.64 44.25 0.12 15.09 16 16 H 0.01 0.46 6.90 -2.39 -0.02 0.45 16 17 C -0.13 -6.37 8.97 71.98 0.65 -5.73 16 18 C -0.54 -29.42 7.99 25.60 0.20 -29.21 16 19 H 0.06 3.21 7.33 -2.91 -0.02 3.19 16 20 C 0.02 0.92 5.30 84.66 0.45 1.36 16 21 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 22 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 26 N -0.52 -20.02 6.94 -189.42 -1.32 -21.34 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.43 9.74 6.39 -92.71 -0.59 9.15 16 38 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.08 1.86 6.29 -2.39 -0.02 1.84 16 40 H 0.07 2.48 7.02 -2.39 -0.02 2.46 16 41 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 42 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 43 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -77.83 374.17 3.64 -74.19 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.41 Total: 24.24 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 7.59 Total: 17.55 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -5.09 Total: -126.32 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.06 Total: -31.50 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -1.24 Total: -3.53 kcal Total: -77.83 3.64 -74.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603064848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.374 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds