Wall clock time and date at job start Tue Mar 31 2020 14:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46982 * 2 1 4 4 N 1.40070 * 126.13219 * 264.58469 * 3 2 1 5 5 C 1.30879 * 108.50514 * 180.28546 * 4 3 2 6 6 C 1.39539 * 108.57590 * 359.76409 * 5 4 3 7 7 C 1.36237 * 126.13186 * 84.46856 * 3 2 1 8 8 C 1.48067 * 126.33389 * 359.97438 * 7 3 2 9 9 C 1.36648 * 126.92784 * 354.48480 * 8 7 3 10 10 N 1.35215 * 106.02466 * 179.97438 * 9 8 7 11 11 C 1.46502 * 125.73757 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47554 * 124.97348 * 11 10 9 13 13 C 1.38635 * 119.74949 * 269.73388 * 12 11 10 14 14 C 1.37620 * 120.24844 * 179.71839 * 13 12 11 15 15 C 1.40713 * 119.74079 * 0.56849 * 14 13 12 16 16 C 1.41397 * 120.24113 * 179.68041 * 15 14 13 17 17 H 1.07998 * 119.99963 * 25.55792 * 16 15 14 18 18 C 1.39948 * 120.00339 * 205.55126 * 16 15 14 19 19 N 1.30829 * 119.99561 * 16.41804 * 18 16 15 20 20 Si 1.86790 * 120.00307 * 196.42414 * 18 16 15 21 21 H 1.48504 * 109.47539 * 59.99754 * 20 18 16 22 22 H 1.48501 * 109.47158 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47241 * 299.99579 * 20 18 16 24 24 C 1.40712 * 119.51521 * 359.69893 * 15 14 13 25 25 C 1.37614 * 119.74425 * 0.02562 * 24 15 14 26 26 N 1.28636 * 108.52587 * 0.02562 * 10 9 8 27 27 N 1.28608 * 110.53104 * 0.02562 * 26 10 9 28 28 H 1.09006 * 109.46982 * 60.00161 * 1 2 3 29 29 H 1.08995 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47301 * 299.99977 * 1 2 3 31 31 H 1.08995 * 109.47301 * 240.00023 * 2 1 3 32 32 H 1.08997 * 109.47189 * 119.99839 * 2 1 3 33 33 H 1.07997 * 125.71345 * 179.74239 * 5 4 3 34 34 H 1.08000 * 126.07539 * 180.02562 * 6 5 4 35 35 H 1.08005 * 126.98421 * 359.96104 * 9 8 7 36 36 H 1.08997 * 109.47324 * 244.97641 * 11 10 9 37 37 H 1.09003 * 109.47361 * 4.97540 * 11 10 9 38 38 H 1.07999 * 119.87220 * 359.96798 * 13 12 11 39 39 H 1.07997 * 120.12851 * 180.26758 * 14 13 12 40 40 H 0.96995 * 119.99714 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.12932 * 179.97438 * 24 15 14 42 42 H 1.08001 * 119.87957 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3942 2.1244 -1.1262 5 6 2.7805 3.3108 -0.7311 6 6 2.6629 3.3769 0.6578 7 6 2.1861 2.1740 1.0952 8 6 1.9086 1.7990 2.5005 9 6 1.3401 0.6380 2.9434 10 7 1.2870 0.7387 4.2908 11 6 0.7526 -0.2744 5.2042 12 6 1.7986 -0.6281 6.2297 13 6 2.6866 -1.6626 5.9781 14 6 3.6496 -1.9905 6.9050 15 6 3.7230 -1.2790 8.1168 16 6 4.7039 -1.6114 9.0794 17 1 5.6241 -2.0854 8.7713 18 6 4.4825 -1.3262 10.4315 19 7 3.2737 -1.0575 10.8539 20 14 5.9126 -1.3288 11.6331 21 1 6.9146 -0.3167 11.2124 22 1 5.4169 -0.9982 12.9933 23 1 6.5435 -2.6730 11.6488 24 6 2.8130 -0.2346 8.3638 25 6 1.8619 0.0797 7.4201 26 7 1.7846 1.8736 4.6357 27 7 2.1646 2.5333 3.5991 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1319 4.1055 -1.3725 34 1 2.9055 4.2281 1.2767 35 1 1.0018 -0.1914 2.3399 36 1 -0.1307 0.1193 5.7070 37 1 0.4817 -1.1664 4.6392 38 1 2.6249 -2.2106 5.0495 39 1 4.3431 -2.7939 6.7052 40 1 3.1203 -0.8595 11.7909 41 1 2.8601 0.3177 9.2907 42 1 1.1621 0.8806 7.6076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603221663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:20 Heat of formation + Delta-G solvation = 190.965297 kcal Electronic energy + Delta-G solvation = -25718.308811 eV Core-core repulsion = 22087.963765 eV Total energy + Delta-G solvation = -3630.345046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.04982 -41.03378 -37.89543 -34.99410 -34.87768 -33.57036 -31.95275 -30.63123 -29.67960 -29.48985 -28.97776 -27.45926 -24.51744 -24.20295 -23.00651 -22.19592 -21.21160 -20.72881 -20.36401 -19.51442 -17.49744 -17.47657 -16.68645 -16.31967 -15.59308 -15.42149 -15.21891 -14.49564 -14.30458 -14.14957 -13.97420 -13.94003 -13.45052 -12.91403 -12.80378 -12.70360 -12.36306 -12.32694 -12.16098 -11.79817 -11.63874 -11.46302 -11.37626 -11.18416 -10.98184 -10.83834 -10.65615 -10.62293 -10.30733 -9.91514 -9.68121 -9.54094 -9.32890 -9.04035 -8.24434 -7.67670 -7.59050 -6.95738 -4.57635 1.22286 1.94983 2.19125 2.30166 2.60117 2.83166 2.91066 2.97592 3.00202 3.18693 3.22772 3.79360 4.14240 4.28828 4.42934 4.59385 4.66140 4.81655 4.86112 4.90259 4.94445 5.26489 5.35313 5.36682 5.48865 5.57880 5.62336 5.64825 5.74948 5.84985 6.01976 6.09872 6.18087 6.22486 6.61325 6.74763 6.77393 6.86821 6.87514 7.05152 7.13370 7.39909 7.58732 7.62121 7.84686 7.85798 8.08327 8.43800 8.68151 8.70593 8.75370 9.97893 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.002515 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.358554 B =11131.654901 C =11422.153314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.121 3.879 3 N -0.367 5.367 4 N -0.292 5.292 5 C 0.044 3.956 6 C -0.240 4.240 7 C 0.173 3.827 8 C 0.021 3.979 9 C -0.053 4.053 10 N -0.262 5.262 11 C 0.172 3.828 12 C -0.260 4.260 13 C -0.065 4.065 14 C -0.230 4.230 15 C 0.123 3.877 16 C -0.453 4.453 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.784 5.784 20 Si 0.912 3.088 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.168 4.168 25 C -0.061 4.061 26 N -0.051 5.051 27 N -0.256 5.256 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.185 0.815 34 H 0.154 0.846 35 H 0.187 0.813 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.285 0.715 41 H 0.121 0.879 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.037 1.057 -14.878 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.000 4.000 3 N -0.152 5.152 4 N -0.113 5.113 5 C -0.140 4.140 6 C -0.270 4.270 7 C 0.045 3.955 8 C -0.118 4.118 9 C -0.207 4.207 10 N -0.054 5.054 11 C 0.055 3.945 12 C -0.263 4.263 13 C -0.084 4.084 14 C -0.250 4.250 15 C 0.120 3.880 16 C -0.481 4.481 17 H 0.099 0.901 18 C -0.145 4.145 19 N -0.408 5.408 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.187 4.187 25 C -0.080 4.080 26 N -0.032 5.032 27 N -0.122 5.122 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.202 0.798 34 H 0.171 0.829 35 H 0.204 0.796 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.101 1.090 -14.429 15.704 hybrid contribution 0.396 -0.438 0.502 0.775 sum -5.705 0.651 -13.927 15.065 Atomic orbital electron populations 1.22290 0.94197 1.03340 1.03667 1.21822 0.95240 0.78261 1.04666 1.48850 1.51573 1.11662 1.03142 1.77312 1.21016 1.05564 1.07437 1.23731 0.99841 0.95441 0.95018 1.21437 1.12110 0.98657 0.94835 1.18094 1.01005 0.91709 0.84713 1.19251 1.07174 0.93754 0.91668 1.23797 1.08993 1.02065 0.85814 1.48234 1.37266 1.14171 1.05769 1.20964 0.96380 0.87403 0.89728 1.18658 1.04607 1.05993 0.96995 1.20317 0.95126 0.95970 0.96951 1.20933 1.02582 1.03630 0.97826 1.17702 0.90789 0.88606 0.90937 1.19691 1.03206 1.34129 0.91107 0.90141 1.25986 0.96570 0.92207 0.99699 1.69794 1.21197 1.32086 1.17685 0.86293 0.81504 0.80060 0.78550 1.18583 1.20107 1.18835 1.21307 0.98386 0.99414 0.99634 1.20488 0.97652 0.96831 0.93027 1.78336 1.11726 0.92768 1.20339 1.75376 1.17957 1.24565 0.94344 0.91317 0.90164 0.91656 0.88188 0.88981 0.79821 0.82863 0.79620 0.88670 0.88468 0.89629 0.88751 0.90423 0.86169 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.62 37.16 0.36 -0.91 16 2 C 0.12 1.06 6.34 -4.04 -0.03 1.04 16 3 N -0.37 -4.60 3.65 -57.40 -0.21 -4.81 16 4 N -0.29 -3.83 12.56 30.56 0.38 -3.44 16 5 C 0.04 0.52 11.99 -17.47 -0.21 0.31 16 6 C -0.24 -3.21 10.76 -39.69 -0.43 -3.64 16 7 C 0.17 2.46 6.92 -82.47 -0.57 1.89 16 8 C 0.02 0.33 7.12 -83.19 -0.59 -0.27 16 9 C -0.05 -0.72 9.74 -16.64 -0.16 -0.88 16 10 N -0.26 -4.16 3.42 -62.12 -0.21 -4.38 16 11 C 0.17 2.52 6.56 -5.19 -0.03 2.49 16 12 C -0.26 -5.05 5.27 -104.33 -0.55 -5.60 16 13 C -0.06 -1.31 9.67 -39.66 -0.38 -1.70 16 14 C -0.23 -5.31 9.80 -38.87 -0.38 -5.69 16 15 C 0.12 3.11 5.57 -106.83 -0.59 2.52 16 16 C -0.45 -11.47 9.06 -37.74 -0.34 -11.81 16 17 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 18 C 0.07 1.79 5.16 -17.34 -0.09 1.70 16 19 N -0.78 -19.21 10.94 55.55 0.61 -18.60 16 20 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.17 -4.16 8.69 -38.88 -0.34 -4.50 16 25 C -0.06 -1.33 9.67 -39.66 -0.38 -1.71 16 26 N -0.05 -0.98 12.89 60.35 0.78 -0.20 16 27 N -0.26 -4.72 12.45 33.02 0.41 -4.31 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.53 7.01 -51.93 -0.36 0.17 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.73 5.84 -51.93 -0.30 0.43 16 33 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.19 1.74 4.77 -52.48 -0.25 1.49 16 36 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 37 H 0.10 1.08 8.00 -51.93 -0.42 0.67 16 38 H 0.09 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 41 H 0.12 3.10 6.19 -52.48 -0.32 2.77 16 42 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -29.97 359.56 -7.59 -37.56 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.01 Total: 6.69 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -4.72 Total: -26.77 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 1.76 Total: -35.74 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.97 -7.59 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603221663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.521 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds