Wall clock time and date at job start Tue Mar 31 2020 14:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46982 * 2 1 4 4 N 1.40070 * 126.13219 * 264.58469 * 3 2 1 5 5 C 1.30879 * 108.50514 * 180.28546 * 4 3 2 6 6 C 1.39539 * 108.57590 * 359.76409 * 5 4 3 7 7 C 1.36237 * 126.13186 * 84.46856 * 3 2 1 8 8 C 1.48067 * 126.33389 * 359.97438 * 7 3 2 9 9 C 1.36648 * 126.92784 * 354.48480 * 8 7 3 10 10 N 1.35215 * 106.02466 * 179.97438 * 9 8 7 11 11 C 1.46502 * 125.73757 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47554 * 124.97348 * 11 10 9 13 13 C 1.38635 * 119.74949 * 269.73388 * 12 11 10 14 14 C 1.37620 * 120.24844 * 179.71839 * 13 12 11 15 15 C 1.40713 * 119.74079 * 0.56849 * 14 13 12 16 16 C 1.41397 * 120.24113 * 179.68041 * 15 14 13 17 17 H 1.07998 * 119.99963 * 25.55792 * 16 15 14 18 18 C 1.39948 * 120.00339 * 205.55126 * 16 15 14 19 19 N 1.30829 * 119.99561 * 16.41804 * 18 16 15 20 20 Si 1.86790 * 120.00307 * 196.42414 * 18 16 15 21 21 H 1.48504 * 109.47539 * 59.99754 * 20 18 16 22 22 H 1.48501 * 109.47158 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47241 * 299.99579 * 20 18 16 24 24 C 1.40712 * 119.51521 * 359.69893 * 15 14 13 25 25 C 1.37614 * 119.74425 * 0.02562 * 24 15 14 26 26 N 1.28636 * 108.52587 * 0.02562 * 10 9 8 27 27 N 1.28608 * 110.53104 * 0.02562 * 26 10 9 28 28 H 1.09006 * 109.46982 * 60.00161 * 1 2 3 29 29 H 1.08995 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47301 * 299.99977 * 1 2 3 31 31 H 1.08995 * 109.47301 * 240.00023 * 2 1 3 32 32 H 1.08997 * 109.47189 * 119.99839 * 2 1 3 33 33 H 1.07997 * 125.71345 * 179.74239 * 5 4 3 34 34 H 1.08000 * 126.07539 * 180.02562 * 6 5 4 35 35 H 1.08005 * 126.98421 * 359.96104 * 9 8 7 36 36 H 1.08997 * 109.47324 * 244.97641 * 11 10 9 37 37 H 1.09003 * 109.47361 * 4.97540 * 11 10 9 38 38 H 1.07999 * 119.87220 * 359.96798 * 13 12 11 39 39 H 1.07997 * 120.12851 * 180.26758 * 14 13 12 40 40 H 0.96995 * 119.99714 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.12932 * 179.97438 * 24 15 14 42 42 H 1.08001 * 119.87957 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3942 2.1244 -1.1262 5 6 2.7805 3.3108 -0.7311 6 6 2.6629 3.3769 0.6578 7 6 2.1861 2.1740 1.0952 8 6 1.9086 1.7990 2.5005 9 6 1.3401 0.6380 2.9434 10 7 1.2870 0.7387 4.2908 11 6 0.7526 -0.2744 5.2042 12 6 1.7986 -0.6281 6.2297 13 6 2.6866 -1.6626 5.9781 14 6 3.6496 -1.9905 6.9050 15 6 3.7230 -1.2790 8.1168 16 6 4.7039 -1.6114 9.0794 17 1 5.6241 -2.0854 8.7713 18 6 4.4825 -1.3262 10.4315 19 7 3.2737 -1.0575 10.8539 20 14 5.9126 -1.3288 11.6331 21 1 6.9146 -0.3167 11.2124 22 1 5.4169 -0.9982 12.9933 23 1 6.5435 -2.6730 11.6488 24 6 2.8130 -0.2346 8.3638 25 6 1.8619 0.0797 7.4201 26 7 1.7846 1.8736 4.6357 27 7 2.1646 2.5333 3.5991 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1319 4.1055 -1.3725 34 1 2.9055 4.2281 1.2767 35 1 1.0018 -0.1914 2.3399 36 1 -0.1307 0.1193 5.7070 37 1 0.4817 -1.1664 4.6392 38 1 2.6249 -2.2106 5.0495 39 1 4.3431 -2.7939 6.7052 40 1 3.1203 -0.8595 11.7909 41 1 2.8601 0.3177 9.2907 42 1 1.1621 0.8806 7.6076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603221663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:20 Heat of formation + Delta-G solvation = 174.103022 kcal Electronic energy + Delta-G solvation = -25719.040014 eV Core-core repulsion = 22087.963765 eV Total energy + Delta-G solvation = -3631.076249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.26840 -41.97309 -39.57652 -36.46021 -35.63365 -35.15038 -33.06248 -32.20923 -31.22589 -30.51827 -30.02601 -28.95828 -26.12572 -24.99928 -24.06472 -23.41847 -22.92267 -22.12858 -21.41458 -20.67365 -19.28707 -18.52230 -17.74287 -17.57628 -17.21422 -16.46118 -16.14010 -15.89377 -15.60742 -15.56587 -15.36544 -14.95136 -14.40590 -14.30963 -13.88273 -13.85349 -13.69301 -13.45995 -13.42755 -13.06488 -12.97410 -12.80285 -12.64355 -12.53878 -12.28110 -12.22061 -12.01584 -11.71596 -11.64308 -11.42537 -11.26401 -11.07906 -10.88810 -9.96477 -9.43652 -9.35621 -9.29080 -8.70963 -6.43224 0.18593 0.64542 0.80906 1.11431 1.33685 1.37289 1.44115 1.47072 1.58715 1.75327 2.14831 2.16227 2.69701 3.09312 3.53684 3.55735 3.69008 3.77494 3.86480 4.06877 4.07807 4.16929 4.34100 4.37649 4.42595 4.51072 4.52864 4.62133 4.75234 4.82848 4.87987 4.98886 5.00684 5.08915 5.19534 5.22515 5.30324 5.37339 5.59013 5.63603 5.70835 5.84965 5.97585 6.04234 6.10225 6.31330 6.63919 6.68394 6.86568 6.95515 7.45912 8.25245 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.002515 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.358554 B =11131.654901 C =11422.153314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.365 5.365 4 N -0.308 5.308 5 C 0.048 3.952 6 C -0.257 4.257 7 C 0.154 3.846 8 C 0.011 3.989 9 C -0.027 4.027 10 N -0.263 5.263 11 C 0.172 3.828 12 C -0.241 4.241 13 C -0.063 4.063 14 C -0.250 4.250 15 C 0.089 3.911 16 C -0.497 4.497 17 H 0.076 0.924 18 C 0.036 3.964 19 N -0.818 5.818 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.265 1.265 23 H -0.257 1.257 24 C -0.197 4.197 25 C -0.068 4.068 26 N -0.098 5.098 27 N -0.285 5.285 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.217 0.783 34 H 0.151 0.849 35 H 0.232 0.768 36 H 0.113 0.887 37 H 0.149 0.851 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.290 0.710 41 H 0.097 0.903 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 -0.230 -17.435 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.150 5.150 4 N -0.130 5.130 5 C -0.136 4.136 6 C -0.287 4.287 7 C 0.025 3.975 8 C -0.129 4.129 9 C -0.181 4.181 10 N -0.055 5.055 11 C 0.055 3.945 12 C -0.243 4.243 13 C -0.082 4.082 14 C -0.269 4.269 15 C 0.087 3.913 16 C -0.526 4.526 17 H 0.094 0.906 18 C -0.180 4.180 19 N -0.443 5.443 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.190 1.190 23 H -0.181 1.181 24 C -0.217 4.217 25 C -0.087 4.087 26 N -0.077 5.077 27 N -0.151 5.151 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.233 0.767 34 H 0.168 0.832 35 H 0.248 0.752 36 H 0.131 0.869 37 H 0.167 0.833 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.329 -0.203 -16.990 18.504 hybrid contribution 0.637 0.002 1.013 1.196 sum -6.692 -0.201 -15.977 17.323 Atomic orbital electron populations 1.22268 0.92786 1.05061 1.02716 1.22222 0.96379 0.76607 1.05925 1.49168 1.50988 1.12577 1.02242 1.77276 1.21484 1.06192 1.08033 1.24217 0.98918 0.95820 0.94667 1.21647 1.12477 0.98742 0.95845 1.18137 1.02070 0.92580 0.84714 1.19528 1.07397 0.94330 0.91658 1.24393 1.06600 1.02238 0.84829 1.48107 1.37081 1.13558 1.06796 1.21189 0.94769 0.89103 0.89397 1.19107 1.04405 1.03925 0.96878 1.20751 0.93717 0.96007 0.97721 1.21176 1.03898 1.03890 0.97965 1.18035 0.91528 0.89480 0.92302 1.19901 1.03699 1.36595 0.92420 0.90602 1.26761 0.98963 0.91425 1.00875 1.69846 1.22834 1.33335 1.18285 0.85274 0.78044 0.80070 0.76530 1.18854 1.18961 1.18076 1.21258 1.00258 1.00188 0.99976 1.20744 0.97035 0.97296 0.93621 1.78323 1.13968 0.94350 1.21091 1.75308 1.18717 1.25731 0.95358 0.92426 0.87035 0.92453 0.86899 0.87762 0.76672 0.83172 0.75182 0.86916 0.83319 0.85344 0.88379 0.89929 0.88500 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.62 71.98 0.69 -1.07 16 2 C 0.11 1.49 6.34 86.38 0.55 2.04 16 3 N -0.36 -8.23 3.65 -335.53 -1.23 -9.46 16 4 N -0.31 -7.44 12.56 -57.22 -0.72 -8.16 16 5 C 0.05 1.04 11.99 85.15 1.02 2.06 16 6 C -0.26 -6.65 10.76 22.20 0.24 -6.41 16 7 C 0.15 4.13 6.92 40.68 0.28 4.41 16 8 C 0.01 0.32 7.12 40.96 0.29 0.61 16 9 C -0.03 -0.62 9.74 83.80 0.82 0.19 16 10 N -0.26 -7.50 3.42 -350.45 -1.20 -8.70 16 11 C 0.17 4.26 6.56 85.63 0.56 4.82 16 12 C -0.24 -8.79 5.27 -19.68 -0.10 -8.89 16 13 C -0.06 -2.41 9.67 22.22 0.21 -2.19 16 14 C -0.25 -11.57 9.80 22.73 0.22 -11.34 16 15 C 0.09 4.71 5.57 -21.29 -0.12 4.59 16 16 C -0.50 -26.52 9.06 23.46 0.21 -26.31 16 17 H 0.08 3.91 7.90 -2.91 -0.02 3.88 16 18 C 0.04 1.78 5.16 85.26 0.44 2.22 16 19 N -0.82 -42.06 10.94 21.83 0.24 -41.82 16 20 Si 0.98 37.87 29.59 68.60 2.03 39.90 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 24 C -0.20 -10.20 8.69 22.73 0.20 -10.00 16 25 C -0.07 -2.97 9.67 22.22 0.21 -2.76 16 26 N -0.10 -3.61 12.89 37.02 0.48 -3.13 16 27 N -0.28 -10.36 12.45 -49.45 -0.62 -10.98 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.70 7.01 -2.39 -0.02 0.68 16 31 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.15 5.84 -2.39 -0.01 1.14 16 33 H 0.22 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.23 2.94 4.77 -2.91 -0.01 2.93 16 36 H 0.11 2.48 8.08 -2.39 -0.02 2.46 16 37 H 0.15 2.23 8.00 -2.39 -0.02 2.22 16 38 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.29 13.49 8.30 -92.71 -0.77 12.73 16 41 H 0.10 5.35 6.19 -2.91 -0.02 5.33 16 42 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -70.71 359.56 5.77 -64.94 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 1.05 Total: 25.45 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 5.73 Total: -48.04 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -3.04 Total: -82.24 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -70.71 5.77 -64.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603221663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.044 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds