Wall clock time and date at job start Tue Mar 31 2020 14:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47298 * 2 1 4 4 C 1.53000 * 109.47287 * 239.99738 * 2 1 3 5 5 S 1.81400 * 109.47339 * 178.55814 * 4 2 1 6 6 C 1.76203 * 103.00010 * 180.02562 * 5 4 2 7 7 C 1.38931 * 120.05646 * 359.72570 * 6 5 4 8 8 C 1.38096 * 119.94833 * 179.78837 * 7 6 5 9 9 C 1.38482 * 120.05093 * 0.48994 * 8 7 6 10 10 F 1.35103 * 119.94563 * 179.76524 * 9 8 7 11 11 C 1.38484 * 120.10956 * 359.74282 * 9 8 7 12 12 C 1.38094 * 120.05234 * 0.02562 * 11 9 8 13 13 N 1.46897 * 109.47039 * 120.00349 * 2 1 3 14 14 C 1.46906 * 111.00198 * 225.47864 * 13 2 1 15 15 H 1.09002 * 109.41274 * 326.04200 * 14 13 2 16 16 C 1.53009 * 109.39494 * 85.63145 * 14 13 2 17 17 C 1.53223 * 109.37872 * 183.51224 * 16 14 13 18 18 C 1.51268 * 108.69682 * 305.66354 * 17 16 14 19 19 C 1.37880 * 120.85084 * 231.22428 * 18 17 16 20 20 N 1.31520 * 119.99843 * 0.02562 * 19 18 17 21 21 Si 1.86795 * 120.00049 * 180.02562 * 19 18 17 22 22 H 1.48500 * 109.47278 * 90.00988 * 21 19 18 23 23 H 1.48506 * 109.46933 * 210.00220 * 21 19 18 24 24 H 1.48494 * 109.47475 * 330.00328 * 21 19 18 25 25 C 1.51267 * 118.30253 * 51.25279 * 18 17 16 26 26 C 1.52950 * 109.41669 * 206.18089 * 14 13 2 27 27 H 1.08995 * 109.47124 * 295.39703 * 1 2 3 28 28 H 1.09003 * 109.47255 * 55.39836 * 1 2 3 29 29 H 1.09005 * 109.47508 * 175.39441 * 1 2 3 30 30 H 1.08998 * 109.47553 * 298.56522 * 4 2 1 31 31 H 1.08999 * 109.47013 * 58.56237 * 4 2 1 32 32 H 1.08011 * 120.02822 * 359.97438 * 7 6 5 33 33 H 1.07998 * 119.97856 * 180.24887 * 8 7 6 34 34 H 1.08000 * 119.97138 * 180.02562 * 11 9 8 35 35 H 1.08007 * 120.02237 * 180.02562 * 12 11 9 36 36 H 1.00902 * 111.00589 * 101.52836 * 13 2 1 37 37 H 1.08998 * 109.33235 * 63.63783 * 16 14 13 38 38 H 1.08997 * 109.65530 * 303.58372 * 16 14 13 39 39 H 1.09004 * 109.62415 * 185.85276 * 17 16 14 40 40 H 1.09002 * 109.62394 * 65.47437 * 17 16 14 41 41 H 0.97000 * 119.99920 * 179.97438 * 20 19 18 42 42 H 1.09007 * 109.62574 * 68.36315 * 25 18 17 43 43 H 1.08996 * 109.62707 * 188.74072 * 25 18 17 44 44 H 1.09007 * 109.48605 * 56.31555 * 26 14 13 45 45 H 1.09005 * 109.48695 * 296.27545 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8535 -0.6841 -1.2709 6 6 4.2499 -1.5463 -2.7556 7 6 3.2353 -2.0529 -3.5581 8 6 3.5483 -2.7244 -4.7235 9 6 4.8727 -2.9019 -5.0872 10 9 5.1767 -3.5633 -6.2253 11 6 5.8860 -2.4021 -4.2864 12 6 5.5778 -1.7257 -3.1226 13 7 2.0196 -0.6926 1.1994 14 6 3.1017 0.0663 1.8406 15 1 3.6913 0.5727 1.0764 16 6 2.5005 1.1089 2.7855 17 6 3.6249 1.9581 3.3873 18 6 4.6365 1.0367 4.0321 19 6 5.0526 1.2415 5.3306 20 7 4.5688 2.2481 6.0251 21 14 6.3035 0.0892 6.1032 22 1 7.6734 0.6017 5.8465 23 1 6.0694 0.0148 7.5678 24 1 6.1621 -1.2647 5.5100 25 6 5.1804 -0.1149 3.2159 26 6 4.0002 -0.8923 2.6237 27 1 -0.3633 0.4407 0.9283 28 1 -0.3634 0.5836 -0.8459 29 1 -0.3634 -1.0244 -0.0825 30 1 1.6979 -1.7561 -1.2365 31 1 1.6558 -0.2226 -2.1390 32 1 2.2023 -1.9189 -3.2724 33 1 2.7599 -3.1149 -5.3498 34 1 6.9181 -2.5415 -4.5724 35 1 6.3685 -1.3358 -2.4986 36 1 2.3176 -1.6310 0.9788 37 1 1.9599 0.6022 3.5849 38 1 1.8149 1.7518 2.2335 39 1 3.2128 2.6322 4.1382 40 1 4.1072 2.5378 2.6002 41 1 4.8613 2.3920 6.9387 42 1 5.8059 0.2704 2.4106 43 1 5.7705 -0.7708 3.8559 44 1 4.3745 -1.6677 1.9552 45 1 3.4270 -1.3520 3.4289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255728198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:10 Heat of formation + Delta-G solvation = -39.141344 kcal Electronic energy + Delta-G solvation = -24699.213413 eV Core-core repulsion = 21142.121433 eV Total energy + Delta-G solvation = -3557.091980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.15377 -39.07433 -38.11451 -35.49611 -32.43135 -31.58029 -30.86877 -29.96750 -29.53655 -27.50794 -26.18867 -23.34795 -23.06046 -21.82453 -21.58801 -20.43746 -19.12416 -18.21146 -17.52820 -16.60399 -16.10274 -15.87171 -15.63832 -15.31973 -15.05420 -14.56685 -14.36953 -13.92090 -13.66636 -13.57809 -13.31421 -13.15543 -12.94639 -12.72755 -12.61777 -12.24044 -12.23371 -11.90088 -11.52301 -11.42737 -11.22259 -10.94471 -10.87539 -10.65392 -10.45074 -10.24444 -10.09794 -9.82403 -9.79791 -9.50732 -9.37137 -8.82936 -8.58126 -8.41258 -7.99463 -7.51567 -6.04092 -3.94155 0.70086 0.86127 1.29063 2.22797 3.17120 3.30445 3.38776 3.39320 3.95151 4.35002 4.37125 4.42821 4.49726 4.54390 4.82666 4.90623 4.99892 5.17995 5.23997 5.36076 5.46589 5.48275 5.51120 5.75820 5.77745 5.81859 5.84021 5.87196 5.95345 6.03983 6.26189 6.33153 6.47353 6.61840 6.74421 6.86741 6.94562 6.97301 7.13815 7.18346 7.49138 7.62955 7.70932 7.77656 7.88362 7.94269 8.46620 9.03884 9.60684 11.05660 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.003038 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.852244 B = 9213.425207 C =10504.996298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.099 3.901 3 H 0.081 0.919 4 C -0.138 4.138 5 S -0.081 6.081 6 C -0.098 4.098 7 C -0.109 4.109 8 C -0.133 4.133 9 C 0.084 3.916 10 F -0.141 7.141 11 C -0.133 4.133 12 C -0.073 4.073 13 N -0.683 5.683 14 C 0.103 3.897 15 H 0.038 0.962 16 C -0.093 4.093 17 C 0.008 3.992 18 C -0.482 4.482 19 C 0.074 3.926 20 N -0.892 5.892 21 Si 0.885 3.115 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.264 1.264 25 C -0.018 4.018 26 C -0.105 4.105 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.336 0.664 37 H 0.053 0.947 38 H 0.025 0.975 39 H 0.056 0.944 40 H -0.001 1.001 41 H 0.263 0.737 42 H 0.015 0.985 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 -8.644 -19.932 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.013 4.013 3 H 0.099 0.901 4 C -0.288 4.288 5 S 0.166 5.834 6 C -0.211 4.211 7 C -0.134 4.134 8 C -0.154 4.154 9 C 0.062 3.938 10 F -0.120 7.120 11 C -0.153 4.153 12 C -0.097 4.097 13 N -0.314 5.314 14 C -0.005 4.005 15 H 0.056 0.944 16 C -0.131 4.131 17 C -0.029 4.029 18 C -0.501 4.501 19 C -0.128 4.128 20 N -0.530 5.530 21 Si 0.714 3.286 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.190 1.190 25 C -0.056 4.056 26 C -0.144 4.144 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.018 0.982 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.880 -7.756 -18.455 20.392 hybrid contribution 0.616 -1.519 -1.401 2.156 sum -3.265 -9.275 -19.856 22.158 Atomic orbital electron populations 1.21756 0.93519 1.01688 1.02045 1.21476 0.96121 0.97995 0.85718 0.90063 1.24696 0.94270 1.05304 1.04536 1.86388 1.06327 1.68007 1.22687 1.22127 0.96538 1.02479 0.99935 1.21052 0.98883 0.98977 0.94440 1.21025 0.94990 1.01241 0.98105 1.17673 0.93737 0.97786 0.84602 1.91497 1.93974 1.78524 1.48014 1.21094 0.99365 0.99806 0.95080 1.20686 0.94864 0.98107 0.96049 1.60785 1.40233 1.05475 1.24943 1.21559 0.89297 0.94559 0.95130 0.94376 1.21631 0.98317 0.96159 0.97014 1.19391 0.92823 0.95081 0.95651 1.20049 1.23177 1.10162 0.96755 1.24846 0.96060 0.95330 0.96550 1.69845 1.43332 1.29553 1.10297 0.86705 0.81862 0.82032 0.78011 1.20539 1.21735 1.18952 1.19782 0.93694 0.95550 0.96590 1.21701 0.98071 0.96425 0.98157 0.91074 0.93020 0.92724 0.89120 0.89105 0.84943 0.84575 0.84254 0.84278 0.84511 0.92795 0.95621 0.92568 0.98241 0.92721 0.96699 0.94821 0.94971 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.52 37.15 0.35 -1.03 16 2 C 0.10 1.23 2.60 -67.72 -0.18 1.05 16 3 H 0.08 1.15 7.24 -51.93 -0.38 0.77 16 4 C -0.14 -1.41 3.61 37.16 0.13 -1.27 16 5 S -0.08 -1.00 19.81 -107.50 -2.13 -3.13 16 6 C -0.10 -1.08 6.11 -39.07 -0.24 -1.32 16 7 C -0.11 -1.04 9.36 -39.38 -0.37 -1.41 16 8 C -0.13 -1.21 10.02 -39.54 -0.40 -1.61 16 9 C 0.08 0.84 7.30 -39.40 -0.29 0.55 16 10 F -0.14 -1.48 17.26 2.25 0.04 -1.44 16 11 C -0.13 -1.26 10.02 -39.54 -0.40 -1.66 16 12 C -0.07 -0.76 9.79 -39.38 -0.39 -1.15 16 13 N -0.68 -10.28 5.93 -99.76 -0.59 -10.87 16 14 C 0.10 1.91 1.74 -67.73 -0.12 1.79 16 15 H 0.04 0.74 6.41 -51.93 -0.33 0.40 16 16 C -0.09 -1.98 5.46 -26.61 -0.15 -2.13 16 17 C 0.01 0.21 5.96 -27.49 -0.16 0.05 16 18 C -0.48 -12.74 5.52 -98.92 -0.55 -13.29 16 19 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 20 N -0.89 -25.92 12.73 55.43 0.71 -25.22 16 21 Si 0.89 21.20 27.53 -169.99 -4.68 16.52 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.26 -6.10 6.11 56.52 0.35 -5.76 16 25 C -0.02 -0.42 5.59 -27.49 -0.15 -0.58 16 26 C -0.11 -2.11 5.23 -26.64 -0.14 -2.25 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.83 7.72 -51.92 -0.40 0.43 16 31 H 0.09 0.79 7.76 -51.92 -0.40 0.38 16 32 H 0.13 1.04 5.88 -52.48 -0.31 0.73 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 36 H 0.34 4.77 7.56 -39.29 -0.30 4.47 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.03 0.50 7.86 -51.93 -0.41 0.09 16 39 H 0.06 1.55 7.07 -51.93 -0.37 1.18 16 40 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.03 0.78 4.59 -51.93 -0.24 0.54 16 44 H 0.03 0.57 8.05 -51.93 -0.42 0.16 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -28.48 366.48 -11.23 -39.70 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.97 Total: 1.19 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -3.12 Total: -22.28 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.11 Total: -36.08 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.68 Total: 16.52 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.13 Total: -3.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.48 -11.23 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255728198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.561 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds