Wall clock time and date at job start Tue Mar 31 2020 14:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47298 * 2 1 4 4 C 1.53000 * 109.47287 * 239.99738 * 2 1 3 5 5 S 1.81400 * 109.47339 * 178.55814 * 4 2 1 6 6 C 1.76203 * 103.00010 * 180.02562 * 5 4 2 7 7 C 1.38931 * 120.05646 * 359.72570 * 6 5 4 8 8 C 1.38096 * 119.94833 * 179.78837 * 7 6 5 9 9 C 1.38482 * 120.05093 * 0.48994 * 8 7 6 10 10 F 1.35103 * 119.94563 * 179.76524 * 9 8 7 11 11 C 1.38484 * 120.10956 * 359.74282 * 9 8 7 12 12 C 1.38094 * 120.05234 * 0.02562 * 11 9 8 13 13 N 1.46897 * 109.47039 * 120.00349 * 2 1 3 14 14 C 1.46906 * 111.00198 * 225.47864 * 13 2 1 15 15 H 1.09002 * 109.41274 * 326.04200 * 14 13 2 16 16 C 1.53009 * 109.39494 * 85.63145 * 14 13 2 17 17 C 1.53223 * 109.37872 * 183.51224 * 16 14 13 18 18 C 1.51268 * 108.69682 * 305.66354 * 17 16 14 19 19 C 1.37880 * 120.85084 * 231.22428 * 18 17 16 20 20 N 1.31520 * 119.99843 * 0.02562 * 19 18 17 21 21 Si 1.86795 * 120.00049 * 180.02562 * 19 18 17 22 22 H 1.48500 * 109.47278 * 90.00988 * 21 19 18 23 23 H 1.48506 * 109.46933 * 210.00220 * 21 19 18 24 24 H 1.48494 * 109.47475 * 330.00328 * 21 19 18 25 25 C 1.51267 * 118.30253 * 51.25279 * 18 17 16 26 26 C 1.52950 * 109.41669 * 206.18089 * 14 13 2 27 27 H 1.08995 * 109.47124 * 295.39703 * 1 2 3 28 28 H 1.09003 * 109.47255 * 55.39836 * 1 2 3 29 29 H 1.09005 * 109.47508 * 175.39441 * 1 2 3 30 30 H 1.08998 * 109.47553 * 298.56522 * 4 2 1 31 31 H 1.08999 * 109.47013 * 58.56237 * 4 2 1 32 32 H 1.08011 * 120.02822 * 359.97438 * 7 6 5 33 33 H 1.07998 * 119.97856 * 180.24887 * 8 7 6 34 34 H 1.08000 * 119.97138 * 180.02562 * 11 9 8 35 35 H 1.08007 * 120.02237 * 180.02562 * 12 11 9 36 36 H 1.00902 * 111.00589 * 101.52836 * 13 2 1 37 37 H 1.08998 * 109.33235 * 63.63783 * 16 14 13 38 38 H 1.08997 * 109.65530 * 303.58372 * 16 14 13 39 39 H 1.09004 * 109.62415 * 185.85276 * 17 16 14 40 40 H 1.09002 * 109.62394 * 65.47437 * 17 16 14 41 41 H 0.97000 * 119.99920 * 179.97438 * 20 19 18 42 42 H 1.09007 * 109.62574 * 68.36315 * 25 18 17 43 43 H 1.08996 * 109.62707 * 188.74072 * 25 18 17 44 44 H 1.09007 * 109.48605 * 56.31555 * 26 14 13 45 45 H 1.09005 * 109.48695 * 296.27545 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8535 -0.6841 -1.2709 6 6 4.2499 -1.5463 -2.7556 7 6 3.2353 -2.0529 -3.5581 8 6 3.5483 -2.7244 -4.7235 9 6 4.8727 -2.9019 -5.0872 10 9 5.1767 -3.5633 -6.2253 11 6 5.8860 -2.4021 -4.2864 12 6 5.5778 -1.7257 -3.1226 13 7 2.0196 -0.6926 1.1994 14 6 3.1017 0.0663 1.8406 15 1 3.6913 0.5727 1.0764 16 6 2.5005 1.1089 2.7855 17 6 3.6249 1.9581 3.3873 18 6 4.6365 1.0367 4.0321 19 6 5.0526 1.2415 5.3306 20 7 4.5688 2.2481 6.0251 21 14 6.3035 0.0892 6.1032 22 1 7.6734 0.6017 5.8465 23 1 6.0694 0.0148 7.5678 24 1 6.1621 -1.2647 5.5100 25 6 5.1804 -0.1149 3.2159 26 6 4.0002 -0.8923 2.6237 27 1 -0.3633 0.4407 0.9283 28 1 -0.3634 0.5836 -0.8459 29 1 -0.3634 -1.0244 -0.0825 30 1 1.6979 -1.7561 -1.2365 31 1 1.6558 -0.2226 -2.1390 32 1 2.2023 -1.9189 -3.2724 33 1 2.7599 -3.1149 -5.3498 34 1 6.9181 -2.5415 -4.5724 35 1 6.3685 -1.3358 -2.4986 36 1 2.3176 -1.6310 0.9788 37 1 1.9599 0.6022 3.5849 38 1 1.8149 1.7518 2.2335 39 1 3.2128 2.6322 4.1382 40 1 4.1072 2.5378 2.6002 41 1 4.8613 2.3920 6.9387 42 1 5.8059 0.2704 2.4106 43 1 5.7705 -0.7708 3.8559 44 1 4.3745 -1.6677 1.9552 45 1 3.4270 -1.3520 3.4289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255728198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:10 Heat of formation + Delta-G solvation = -53.250835 kcal Electronic energy + Delta-G solvation = -24699.825247 eV Core-core repulsion = 21142.121433 eV Total energy + Delta-G solvation = -3557.703814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.92004 -39.80118 -39.53535 -36.97008 -34.21319 -32.35391 -31.71342 -31.43705 -31.30504 -28.32165 -27.85575 -24.09536 -23.80648 -23.65596 -23.24321 -21.60507 -20.83850 -18.96787 -18.34192 -18.00963 -17.35851 -16.82646 -16.62148 -16.42354 -16.18904 -16.03098 -15.40737 -15.12345 -14.78906 -14.59558 -14.43184 -14.32829 -14.22045 -14.03116 -13.83934 -13.78077 -13.47634 -13.28985 -12.76922 -12.71571 -12.52502 -12.25854 -12.15380 -12.12482 -11.92712 -11.84678 -11.72796 -11.27353 -11.06106 -10.69464 -10.58906 -10.53246 -10.40657 -10.21187 -9.26315 -8.40072 -8.13513 -6.07239 -0.05224 0.15506 0.45630 1.39884 1.41605 1.41957 1.50579 2.43061 2.44223 3.08265 3.22806 3.30807 3.64807 3.67545 3.83732 4.05883 4.15356 4.18737 4.27203 4.30084 4.39774 4.57698 4.63197 4.65582 4.70172 4.82629 4.83675 4.91095 5.05146 5.05817 5.08922 5.09875 5.11937 5.15063 5.20652 5.30157 5.31039 5.35028 5.48403 5.65374 5.67217 5.76073 5.81522 5.94482 6.27284 6.40603 6.63578 6.99538 7.50237 8.97755 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.003038 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.852244 B = 9213.425207 C =10504.996298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.098 3.902 3 H 0.062 0.938 4 C -0.120 4.120 5 S -0.136 6.136 6 C -0.102 4.102 7 C -0.108 4.108 8 C -0.131 4.131 9 C 0.072 3.928 10 F -0.146 7.146 11 C -0.134 4.134 12 C -0.085 4.085 13 N -0.682 5.682 14 C 0.119 3.881 15 H 0.034 0.966 16 C -0.081 4.081 17 C 0.006 3.994 18 C -0.493 4.493 19 C 0.017 3.983 20 N -0.936 5.936 21 Si 0.940 3.060 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.247 1.247 25 C -0.020 4.020 26 C -0.099 4.099 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.345 0.655 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.021 0.979 40 H -0.007 1.007 41 H 0.261 0.739 42 H 0.017 0.983 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 -10.857 -22.265 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.014 4.014 3 H 0.080 0.920 4 C -0.270 4.270 5 S 0.109 5.891 6 C -0.215 4.215 7 C -0.132 4.132 8 C -0.151 4.151 9 C 0.050 3.950 10 F -0.125 7.125 11 C -0.154 4.154 12 C -0.109 4.109 13 N -0.314 5.314 14 C 0.010 3.990 15 H 0.052 0.948 16 C -0.120 4.120 17 C -0.032 4.032 18 C -0.513 4.513 19 C -0.181 4.181 20 N -0.576 5.576 21 Si 0.767 3.233 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.171 1.171 25 C -0.058 4.058 26 C -0.137 4.137 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.039 0.961 40 H 0.011 0.989 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.565 -9.994 -20.822 23.543 hybrid contribution 0.800 -0.779 -0.783 1.364 sum -3.765 -10.773 -21.605 24.434 Atomic orbital electron populations 1.21707 0.91796 1.02839 1.02092 1.21503 0.97238 0.96946 0.85676 0.91978 1.24586 0.92105 1.06264 1.04016 1.86548 1.08984 1.69024 1.24518 1.22084 0.97134 1.02926 0.99391 1.21281 0.99485 0.98328 0.94112 1.21292 0.95216 1.00530 0.98081 1.17896 0.94425 0.98036 0.84610 1.91488 1.94064 1.78659 1.48257 1.21266 1.00308 0.99237 0.94615 1.20808 0.95002 0.98575 0.96515 1.60642 1.38407 1.05706 1.26681 1.21172 0.89744 0.93741 0.94370 0.94810 1.21422 0.96935 0.96533 0.97103 1.19349 0.94060 0.95138 0.94656 1.20678 1.22613 1.10846 0.97138 1.25656 0.98090 0.96826 0.97481 1.69994 1.45380 1.31671 1.10584 0.85810 0.79607 0.80996 0.76921 1.20128 1.22048 1.17115 1.19794 0.94929 0.94774 0.96298 1.21579 0.96914 0.96842 0.98381 0.92928 0.90779 0.91359 0.87310 0.86973 0.82993 0.82321 0.82685 0.84228 0.83501 0.94623 0.94346 0.96067 0.98901 0.92985 0.96469 0.94723 0.92237 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 9.52 71.98 0.69 -1.59 16 2 C 0.10 2.18 2.60 44.91 0.12 2.30 16 3 H 0.06 1.65 7.24 -2.39 -0.02 1.64 16 4 C -0.12 -2.05 3.61 71.98 0.26 -1.79 16 5 S -0.14 -3.12 19.81 -56.49 -1.12 -4.24 16 6 C -0.10 -2.04 6.11 22.60 0.14 -1.90 16 7 C -0.11 -1.72 9.36 22.40 0.21 -1.51 16 8 C -0.13 -1.99 10.02 22.29 0.22 -1.77 16 9 C 0.07 1.29 7.30 22.39 0.16 1.45 16 10 F -0.15 -2.78 17.26 44.97 0.78 -2.00 16 11 C -0.13 -2.31 10.02 22.29 0.22 -2.09 16 12 C -0.09 -1.65 9.79 22.40 0.22 -1.43 16 13 N -0.68 -19.13 5.93 -469.54 -2.79 -21.91 16 14 C 0.12 4.30 1.74 44.90 0.08 4.38 16 15 H 0.03 1.28 6.41 -2.39 -0.02 1.26 16 16 C -0.08 -3.51 5.46 30.67 0.17 -3.34 16 17 C 0.01 0.31 5.96 30.10 0.18 0.49 16 18 C -0.49 -26.48 5.52 -16.17 -0.09 -26.56 16 19 C 0.02 0.95 5.46 84.65 0.46 1.41 16 20 N -0.94 -56.41 12.73 21.45 0.27 -56.14 16 21 Si 0.94 43.83 27.53 68.60 1.89 45.72 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.25 -10.70 6.11 99.48 0.61 -10.09 16 25 C -0.02 -0.91 5.59 30.10 0.17 -0.74 16 26 C -0.10 -3.82 5.23 30.65 0.16 -3.66 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.11 1.51 7.72 -2.39 -0.02 1.49 16 31 H 0.11 1.48 7.76 -2.39 -0.02 1.46 16 32 H 0.15 1.74 5.88 -2.90 -0.02 1.73 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.35 8.80 7.56 -89.69 -0.68 8.13 16 37 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.52 7.86 -2.39 -0.02 1.50 16 39 H 0.02 1.21 7.07 -2.38 -0.02 1.20 16 40 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.03 1.55 4.59 -2.39 -0.01 1.54 16 44 H 0.06 1.98 8.05 -2.38 -0.02 1.96 16 45 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -63.17 366.48 2.61 -60.55 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.21 Total: 14.37 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 3.37 Total: -36.35 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.51 Total: -78.05 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.89 Total: 45.72 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -1.12 Total: -4.24 kcal Total: -63.17 2.61 -60.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255728198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.303 kcal (2) G-P(sol) polarization free energy of solvation -63.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds