Wall clock time and date at job start Tue Mar 31 2020 14:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47457 * 2 1 4 4 C 1.53001 * 109.47342 * 120.00231 * 2 1 3 5 5 S 1.81403 * 109.47405 * 182.09284 * 4 2 1 6 6 C 1.76197 * 102.99975 * 179.97438 * 5 4 2 7 7 C 1.38942 * 120.05656 * 359.72114 * 6 5 4 8 8 C 1.38103 * 119.94283 * 179.74844 * 7 6 5 9 9 C 1.38476 * 120.05572 * 0.52893 * 8 7 6 10 10 F 1.35095 * 119.94497 * 179.77146 * 9 8 7 11 11 C 1.38480 * 120.10967 * 359.74479 * 9 8 7 12 12 C 1.38094 * 120.05674 * 359.97438 * 11 9 8 13 13 N 1.46904 * 109.47014 * 239.99488 * 2 1 3 14 14 C 1.46851 * 110.99374 * 72.85990 * 13 2 1 15 15 C 1.53042 * 109.51996 * 174.15995 * 14 13 2 16 16 C 1.53111 * 109.27864 * 59.18107 * 15 14 13 17 17 C 1.53122 * 109.15917 * 302.34491 * 16 15 14 18 18 H 1.09001 * 109.50316 * 297.70867 * 17 16 15 19 19 C 1.50701 * 109.50374 * 177.59753 * 17 16 15 20 20 H 1.07997 * 120.00032 * 240.19916 * 19 17 16 21 21 C 1.37879 * 120.00404 * 60.19298 * 19 17 16 22 22 N 1.31515 * 119.99483 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00463 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46757 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47061 * 119.99856 * 23 21 19 26 26 H 1.48498 * 109.47331 * 240.00333 * 23 21 19 27 27 C 1.46839 * 111.00306 * 308.65020 * 13 2 1 28 28 H 1.09004 * 109.47295 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46715 * 299.99888 * 1 2 3 30 30 H 1.08998 * 109.47242 * 59.99815 * 1 2 3 31 31 H 1.09003 * 109.46890 * 302.08927 * 4 2 1 32 32 H 1.09003 * 109.47379 * 62.08578 * 4 2 1 33 33 H 1.07998 * 120.02692 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.97064 * 180.25566 * 8 7 6 35 35 H 1.07998 * 119.96958 * 179.97438 * 11 9 8 36 36 H 1.07998 * 120.03293 * 180.02562 * 12 11 9 37 37 H 1.08994 * 109.46520 * 294.17435 * 14 13 2 38 38 H 1.08999 * 109.46402 * 54.14702 * 14 13 2 39 39 H 1.09000 * 109.50082 * 299.23563 * 15 14 13 40 40 H 1.09006 * 109.53190 * 179.14055 * 15 14 13 41 41 H 1.09002 * 109.52787 * 182.44163 * 16 15 14 42 42 H 1.09002 * 109.52664 * 62.24486 * 16 15 14 43 43 H 0.97009 * 119.99932 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.46666 * 305.85511 * 27 13 2 45 45 H 1.09009 * 109.46262 * 65.82956 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 3.8530 -0.6674 1.2808 6 6 4.2494 -1.5315 2.7643 7 6 3.2348 -2.0405 3.5654 8 6 3.5483 -2.7219 4.7250 9 6 4.8722 -2.8885 5.0952 10 9 5.1762 -3.5514 6.2324 11 6 5.8851 -2.3771 4.3013 12 6 5.5770 -1.7000 3.1378 13 7 2.0196 -0.6926 -1.1994 14 6 1.8140 0.1265 -2.4008 15 6 2.4641 -0.5592 -3.6047 16 6 1.8397 -1.9442 -3.7955 17 6 2.0250 -2.7600 -2.5131 18 1 3.0889 -2.8992 -2.3209 19 6 1.3616 -4.1039 -2.6714 20 1 0.5648 -4.3948 -2.0030 21 6 1.7717 -4.9619 -3.6697 22 7 2.7423 -4.6077 -4.4835 23 14 0.9489 -6.6273 -3.8664 24 1 -0.1065 -6.7830 -2.8334 25 1 0.3373 -6.7209 -5.2164 26 1 1.9614 -7.7017 -3.7061 27 6 1.3878 -2.0106 -1.3409 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6464 -0.2296 2.1388 32 1 1.7076 -1.7592 1.2307 33 1 2.2019 -1.9073 3.2793 34 1 2.7601 -3.1214 5.3460 35 1 6.9169 -2.5080 4.5923 36 1 6.3673 -1.3018 2.5188 37 1 0.7457 0.2431 -2.5824 38 1 2.2664 1.1072 -2.2535 39 1 3.5348 -0.6637 -3.4296 40 1 2.2984 0.0411 -4.4993 41 1 2.3298 -2.4535 -4.6253 42 1 0.7761 -1.8380 -4.0091 43 1 3.0311 -5.2116 -5.1857 44 1 1.5305 -2.5821 -0.4237 45 1 0.3213 -1.8840 -1.5276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255744995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:56 Heat of formation + Delta-G solvation = -27.435869 kcal Electronic energy + Delta-G solvation = -24995.988469 eV Core-core repulsion = 21439.404076 eV Total energy + Delta-G solvation = -3556.584393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.96374 -38.88219 -38.84519 -34.91478 -32.60202 -31.39067 -30.64938 -29.89934 -29.53767 -27.41371 -24.97330 -23.77052 -22.99355 -22.80160 -21.40609 -20.16413 -18.34246 -17.95585 -17.26689 -16.52932 -16.35553 -15.68984 -15.60596 -15.20904 -14.63236 -14.45935 -14.24427 -13.93751 -13.68520 -13.51886 -13.38670 -13.25753 -13.05897 -12.69701 -12.58543 -12.20882 -12.13111 -11.71355 -11.45465 -11.24030 -11.18238 -11.07834 -10.95203 -10.65027 -10.51049 -10.07661 -10.03431 -9.80995 -9.55395 -9.44472 -9.29620 -9.03235 -8.68150 -8.29488 -7.69565 -7.15425 -5.96551 -4.02493 0.92267 1.07355 1.58801 2.56594 3.29796 3.38157 3.38658 3.40987 4.15781 4.28121 4.47539 4.55668 4.69836 4.76438 5.02988 5.06495 5.21289 5.28472 5.33859 5.40852 5.52445 5.58040 5.63307 5.70834 5.78497 5.81000 5.94609 5.97660 6.01747 6.02284 6.08270 6.20410 6.29471 6.40841 6.50458 6.68529 6.72157 6.76742 6.97510 7.22965 7.39608 7.63750 7.74423 7.79469 8.11017 8.19206 8.49026 9.01790 9.61825 11.09427 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003635 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.389036 B = 7700.664318 C = 9171.120993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.094 3.906 3 H 0.083 0.917 4 C -0.105 4.105 5 S -0.053 6.053 6 C -0.096 4.096 7 C -0.111 4.111 8 C -0.131 4.131 9 C 0.079 3.921 10 F -0.143 7.143 11 C -0.133 4.133 12 C -0.077 4.077 13 N -0.526 5.526 14 C 0.064 3.936 15 C -0.117 4.117 16 C -0.110 4.110 17 C 0.056 3.944 18 H 0.036 0.964 19 C -0.514 4.514 20 H 0.052 0.948 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.887 3.113 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.066 3.934 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.025 0.975 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 10.216 14.475 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.016 4.016 3 H 0.101 0.899 4 C -0.254 4.254 5 S 0.194 5.806 6 C -0.210 4.210 7 C -0.136 4.136 8 C -0.152 4.152 9 C 0.057 3.943 10 F -0.122 7.122 11 C -0.153 4.153 12 C -0.101 4.101 13 N -0.250 5.250 14 C -0.064 4.064 15 C -0.155 4.155 16 C -0.148 4.148 17 C 0.038 3.962 18 H 0.054 0.946 19 C -0.553 4.553 20 H 0.070 0.930 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.715 3.285 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.061 4.061 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.322 10.629 13.478 17.321 hybrid contribution -2.188 -1.655 0.927 2.896 sum 0.134 8.974 14.405 16.972 Atomic orbital electron populations 1.22434 0.96643 1.03044 1.01967 1.21372 0.92830 0.97638 0.89792 0.89887 1.23917 0.94800 1.05365 1.01315 1.85969 1.06250 1.66767 1.21572 1.22216 0.96469 1.02555 0.99773 1.21055 0.98953 0.99089 0.94453 1.21016 0.94951 1.01005 0.98214 1.17638 0.93765 0.98147 0.84786 1.91481 1.93981 1.78598 1.48161 1.21048 0.99157 0.99876 0.95265 1.20618 0.94793 0.98697 0.96008 1.62253 1.57809 1.03904 1.00989 1.22023 0.97892 0.95544 0.90919 1.21666 1.00712 0.98387 0.94685 1.21650 0.97937 0.92306 1.02949 1.18644 0.96887 0.92024 0.88682 0.94633 1.21169 1.18915 1.00460 1.14726 0.92987 1.24914 0.94970 0.97977 0.95865 1.69903 1.28012 1.36071 1.18566 0.86618 0.79445 0.84558 0.77844 1.19934 1.21119 1.21034 1.22350 0.95481 0.87433 1.00793 0.91463 0.92557 0.91947 0.89650 0.88884 0.85022 0.84730 0.84482 0.84467 0.95705 0.92494 0.91986 0.93618 0.89176 0.95312 0.93145 0.92520 0.95874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 8.40 37.16 0.31 -1.86 16 2 C 0.09 1.25 2.32 -67.71 -0.16 1.09 16 3 H 0.08 1.04 7.93 -51.93 -0.41 0.62 16 4 C -0.11 -1.30 3.72 37.16 0.14 -1.17 16 5 S -0.05 -0.73 21.57 -107.50 -2.32 -3.05 16 6 C -0.10 -1.23 6.11 -39.06 -0.24 -1.47 16 7 C -0.11 -1.30 9.36 -39.37 -0.37 -1.67 16 8 C -0.13 -1.47 10.02 -39.54 -0.40 -1.87 16 9 C 0.08 0.93 7.30 -39.40 -0.29 0.64 16 10 F -0.14 -1.73 17.26 2.25 0.04 -1.70 16 11 C -0.13 -1.45 10.02 -39.55 -0.40 -1.85 16 12 C -0.08 -0.90 9.79 -39.37 -0.39 -1.28 16 13 N -0.53 -8.88 4.19 -226.69 -0.95 -9.83 16 14 C 0.06 1.06 5.18 -3.83 -0.02 1.04 16 15 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 16 C -0.11 -2.55 5.03 -26.61 -0.13 -2.68 16 17 C 0.06 1.37 2.26 -91.69 -0.21 1.17 16 18 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.51 -13.86 8.56 -34.44 -0.29 -14.16 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.89 -25.14 11.36 55.43 0.63 -24.51 16 23 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.07 1.32 3.69 -3.84 -0.01 1.30 16 28 H 0.07 0.90 6.45 -51.93 -0.33 0.56 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.77 6.93 -51.93 -0.36 0.41 16 31 H 0.09 0.85 7.73 -51.92 -0.40 0.45 16 32 H 0.09 1.26 6.06 -51.92 -0.31 0.94 16 33 H 0.13 1.37 5.88 -52.49 -0.31 1.06 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.02 0.41 6.98 -51.93 -0.36 0.04 16 38 H 0.06 0.83 7.99 -51.93 -0.41 0.42 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.06 1.13 6.30 -51.93 -0.33 0.81 16 45 H 0.02 0.46 6.57 -51.92 -0.34 0.12 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -28.30 364.32 -11.66 -39.96 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.82 Total: 0.97 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.71 Total: -23.48 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.32 Total: -34.34 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.32 Total: -3.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.30 -11.66 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255744995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.521 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds