Wall clock time and date at job start Tue Mar 31 2020 14:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47457 * 2 1 4 4 C 1.53001 * 109.47342 * 120.00231 * 2 1 3 5 5 S 1.81403 * 109.47405 * 182.09284 * 4 2 1 6 6 C 1.76197 * 102.99975 * 179.97438 * 5 4 2 7 7 C 1.38942 * 120.05656 * 359.72114 * 6 5 4 8 8 C 1.38103 * 119.94283 * 179.74844 * 7 6 5 9 9 C 1.38476 * 120.05572 * 0.52893 * 8 7 6 10 10 F 1.35095 * 119.94497 * 179.77146 * 9 8 7 11 11 C 1.38480 * 120.10967 * 359.74479 * 9 8 7 12 12 C 1.38094 * 120.05674 * 359.97438 * 11 9 8 13 13 N 1.46904 * 109.47014 * 239.99488 * 2 1 3 14 14 C 1.46851 * 110.99374 * 72.85990 * 13 2 1 15 15 C 1.53042 * 109.51996 * 174.15995 * 14 13 2 16 16 C 1.53111 * 109.27864 * 59.18107 * 15 14 13 17 17 C 1.53122 * 109.15917 * 302.34491 * 16 15 14 18 18 H 1.09001 * 109.50316 * 297.70867 * 17 16 15 19 19 C 1.50701 * 109.50374 * 177.59753 * 17 16 15 20 20 H 1.07997 * 120.00032 * 240.19916 * 19 17 16 21 21 C 1.37879 * 120.00404 * 60.19298 * 19 17 16 22 22 N 1.31515 * 119.99483 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00463 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46757 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47061 * 119.99856 * 23 21 19 26 26 H 1.48498 * 109.47331 * 240.00333 * 23 21 19 27 27 C 1.46839 * 111.00306 * 308.65020 * 13 2 1 28 28 H 1.09004 * 109.47295 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46715 * 299.99888 * 1 2 3 30 30 H 1.08998 * 109.47242 * 59.99815 * 1 2 3 31 31 H 1.09003 * 109.46890 * 302.08927 * 4 2 1 32 32 H 1.09003 * 109.47379 * 62.08578 * 4 2 1 33 33 H 1.07998 * 120.02692 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.97064 * 180.25566 * 8 7 6 35 35 H 1.07998 * 119.96958 * 179.97438 * 11 9 8 36 36 H 1.07998 * 120.03293 * 180.02562 * 12 11 9 37 37 H 1.08994 * 109.46520 * 294.17435 * 14 13 2 38 38 H 1.08999 * 109.46402 * 54.14702 * 14 13 2 39 39 H 1.09000 * 109.50082 * 299.23563 * 15 14 13 40 40 H 1.09006 * 109.53190 * 179.14055 * 15 14 13 41 41 H 1.09002 * 109.52787 * 182.44163 * 16 15 14 42 42 H 1.09002 * 109.52664 * 62.24486 * 16 15 14 43 43 H 0.97009 * 119.99932 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.46666 * 305.85511 * 27 13 2 45 45 H 1.09009 * 109.46262 * 65.82956 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 3.8530 -0.6674 1.2808 6 6 4.2494 -1.5315 2.7643 7 6 3.2348 -2.0405 3.5654 8 6 3.5483 -2.7219 4.7250 9 6 4.8722 -2.8885 5.0952 10 9 5.1762 -3.5514 6.2324 11 6 5.8851 -2.3771 4.3013 12 6 5.5770 -1.7000 3.1378 13 7 2.0196 -0.6926 -1.1994 14 6 1.8140 0.1265 -2.4008 15 6 2.4641 -0.5592 -3.6047 16 6 1.8397 -1.9442 -3.7955 17 6 2.0250 -2.7600 -2.5131 18 1 3.0889 -2.8992 -2.3209 19 6 1.3616 -4.1039 -2.6714 20 1 0.5648 -4.3948 -2.0030 21 6 1.7717 -4.9619 -3.6697 22 7 2.7423 -4.6077 -4.4835 23 14 0.9489 -6.6273 -3.8664 24 1 -0.1065 -6.7830 -2.8334 25 1 0.3373 -6.7209 -5.2164 26 1 1.9614 -7.7017 -3.7061 27 6 1.3878 -2.0106 -1.3409 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6464 -0.2296 2.1388 32 1 1.7076 -1.7592 1.2307 33 1 2.2019 -1.9073 3.2793 34 1 2.7601 -3.1214 5.3460 35 1 6.9169 -2.5080 4.5923 36 1 6.3673 -1.3018 2.5188 37 1 0.7457 0.2431 -2.5824 38 1 2.2664 1.1072 -2.2535 39 1 3.5348 -0.6637 -3.4296 40 1 2.2984 0.0411 -4.4993 41 1 2.3298 -2.4535 -4.6253 42 1 0.7761 -1.8380 -4.0091 43 1 3.0311 -5.2116 -5.1857 44 1 1.5305 -2.5821 -0.4237 45 1 0.3213 -1.8840 -1.5276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255744995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:55 Heat of formation + Delta-G solvation = -40.546301 kcal Electronic energy + Delta-G solvation = -24996.556980 eV Core-core repulsion = 21439.404076 eV Total energy + Delta-G solvation = -3557.152904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.88464 -40.27921 -39.73300 -36.48035 -34.39467 -32.30558 -31.69686 -31.54187 -30.90275 -28.38448 -26.92299 -25.13598 -23.95667 -23.73781 -23.09521 -21.48744 -19.91548 -18.89058 -18.43524 -18.17447 -17.29189 -17.16832 -16.59119 -16.36731 -16.19463 -15.65923 -15.47497 -15.13348 -14.90681 -14.67909 -14.62196 -14.44607 -14.28960 -14.07714 -13.72359 -13.61664 -13.51748 -13.00464 -12.83842 -12.73816 -12.65008 -12.49573 -12.23066 -12.09257 -11.91785 -11.73788 -11.58040 -11.34194 -11.04400 -10.78915 -10.58674 -10.48643 -10.35114 -10.16522 -9.02696 -8.18182 -8.06191 -6.19677 0.00504 0.20218 0.60744 1.39061 1.41268 1.51578 1.58815 2.43041 2.49288 3.07573 3.21202 3.27248 3.70560 3.72679 3.87867 4.03091 4.19751 4.23671 4.27355 4.34700 4.36573 4.44940 4.50254 4.59128 4.68928 4.70074 4.76366 4.82381 4.87592 4.93197 4.97999 5.07549 5.09868 5.13341 5.16504 5.19936 5.24894 5.32853 5.46077 5.57027 5.66161 5.81308 6.02183 6.18402 6.25981 6.41110 6.50449 6.94573 7.48175 8.98459 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003635 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.389036 B = 7700.664318 C = 9171.120993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.101 0.899 4 C -0.095 4.095 5 S -0.094 6.094 6 C -0.107 4.107 7 C -0.116 4.116 8 C -0.133 4.133 9 C 0.067 3.933 10 F -0.147 7.147 11 C -0.132 4.132 12 C -0.086 4.086 13 N -0.536 5.536 14 C 0.068 3.932 15 C -0.110 4.110 16 C -0.103 4.103 17 C 0.055 3.945 18 H -0.008 1.008 19 C -0.532 4.532 20 H 0.050 0.950 21 C 0.015 3.985 22 N -0.915 5.915 23 Si 0.949 3.051 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.283 1.283 27 C 0.087 3.913 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.032 0.968 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.259 0.741 44 H 0.051 0.949 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 11.285 15.945 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.015 4.015 3 H 0.119 0.881 4 C -0.244 4.244 5 S 0.153 5.847 6 C -0.221 4.221 7 C -0.141 4.141 8 C -0.153 4.153 9 C 0.045 3.955 10 F -0.125 7.125 11 C -0.152 4.152 12 C -0.110 4.110 13 N -0.261 5.261 14 C -0.059 4.059 15 C -0.148 4.148 16 C -0.142 4.142 17 C 0.036 3.964 18 H 0.011 0.989 19 C -0.571 4.571 20 H 0.068 0.932 21 C -0.184 4.184 22 N -0.554 5.554 23 Si 0.775 3.225 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.209 1.209 27 C -0.040 4.040 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.164 0.836 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.207 11.707 14.968 19.041 hybrid contribution -1.789 -1.993 0.508 2.725 sum -0.582 9.714 15.475 18.281 Atomic orbital electron populations 1.22368 0.95257 1.02431 1.03404 1.21491 0.93857 0.97996 0.88144 0.88146 1.23908 0.93440 1.04809 1.02207 1.86039 1.08086 1.67502 1.23068 1.22269 0.97239 1.03157 0.99416 1.21241 0.99402 0.98976 0.94448 1.21257 0.95388 1.00515 0.98178 1.17855 0.94343 0.98411 0.84889 1.91473 1.94033 1.78703 1.48327 1.21280 1.00219 0.99021 0.94675 1.20822 0.94831 0.98876 0.96457 1.62137 1.58197 1.03101 1.02622 1.22001 0.98270 0.96164 0.89509 1.21567 0.99590 0.96388 0.97240 1.21449 0.97302 0.94457 1.00948 1.18547 0.94314 0.92247 0.91267 0.98939 1.21561 1.18937 1.01998 1.14611 0.93199 1.25675 0.95571 1.01418 0.95690 1.70052 1.29200 1.37168 1.19018 0.85652 0.78587 0.80331 0.77962 1.19134 1.20636 1.20879 1.21910 0.94904 0.88859 0.98375 0.93056 0.89627 0.92031 0.86624 0.90266 0.83810 0.82780 0.82378 0.83606 0.94940 0.89554 0.93467 0.91500 0.92812 0.95916 0.93222 0.93035 0.95943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 8.40 71.98 0.60 -3.07 16 2 C 0.09 2.28 2.32 44.91 0.10 2.38 16 3 H 0.10 2.14 7.93 -2.39 -0.02 2.12 16 4 C -0.10 -2.17 3.72 71.98 0.27 -1.90 16 5 S -0.09 -2.51 21.57 -56.49 -1.22 -3.72 16 6 C -0.11 -2.65 6.11 22.61 0.14 -2.51 16 7 C -0.12 -2.57 9.36 22.41 0.21 -2.36 16 8 C -0.13 -2.76 10.02 22.29 0.22 -2.54 16 9 C 0.07 1.49 7.30 22.38 0.16 1.65 16 10 F -0.15 -3.35 17.26 44.97 0.78 -2.57 16 11 C -0.13 -2.71 10.02 22.29 0.22 -2.48 16 12 C -0.09 -1.94 9.79 22.41 0.22 -1.72 16 13 N -0.54 -17.50 4.19 -871.12 -3.65 -21.16 16 14 C 0.07 2.11 5.18 86.33 0.45 2.56 16 15 C -0.11 -4.14 6.09 30.65 0.19 -3.95 16 16 C -0.10 -4.91 5.03 30.67 0.15 -4.75 16 17 C 0.06 2.77 2.26 -11.49 -0.03 2.74 16 18 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 19 C -0.53 -29.46 8.56 25.60 0.22 -29.24 16 20 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 21 C 0.02 0.85 5.30 84.66 0.45 1.29 16 22 N -0.91 -53.61 11.36 21.45 0.24 -53.36 16 23 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 C 0.09 3.47 3.69 86.33 0.32 3.79 16 28 H 0.05 1.26 6.45 -2.38 -0.02 1.24 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.06 1.33 6.93 -2.39 -0.02 1.31 16 31 H 0.12 1.94 7.73 -2.39 -0.02 1.92 16 32 H 0.08 2.05 6.06 -2.39 -0.01 2.03 16 33 H 0.14 2.72 5.88 -2.91 -0.02 2.70 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 37 H 0.03 0.98 6.98 -2.39 -0.02 0.96 16 38 H 0.09 2.23 7.99 -2.39 -0.02 2.21 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 41 H 0.05 2.93 6.17 -2.39 -0.01 2.92 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 44 H 0.05 2.08 6.30 -2.39 -0.02 2.07 16 45 H 0.02 0.89 6.57 -2.38 -0.02 0.88 16 Total: -1.00 -63.04 364.32 3.05 -59.98 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.98 Total: 14.92 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 3.90 Total: -40.11 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -3.41 Total: -74.52 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -1.22 Total: -3.72 kcal Total: -63.04 3.05 -59.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255744995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.439 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds