Wall clock time and date at job start Tue Mar 31 2020 13:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47590 * 2 1 4 4 C 1.34755 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.21533 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.47256 * 120.00321 * 180.02562 * 4 3 2 7 7 C 1.38323 * 126.46029 * 270.02818 * 6 4 3 8 8 C 1.50703 * 125.79899 * 359.97254 * 7 6 4 9 9 N 1.34197 * 108.40155 * 180.23962 * 7 6 4 10 10 H 0.97004 * 125.38100 * 179.73424 * 9 7 6 11 11 C 1.37835 * 109.22759 * 359.56971 * 9 7 6 12 12 C 1.46643 * 125.84788 * 180.15642 * 11 9 7 13 13 O 1.21603 * 119.99909 * 180.32769 * 12 11 9 14 14 O 1.34873 * 120.00309 * 0.32223 * 12 11 9 15 15 C 1.45200 * 117.00022 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46803 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47193 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47340 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99683 * 359.97438 * 18 17 16 20 20 C 1.37869 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00219 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46842 * 59.99531 * 22 20 18 24 24 H 1.48494 * 109.47364 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47113 * 300.00067 * 22 20 18 26 26 C 1.36417 * 108.30274 * 0.42974 * 11 9 7 27 27 C 1.50694 * 126.50418 * 179.76531 * 26 11 9 28 28 H 1.09005 * 109.47017 * 299.99947 * 1 2 3 29 29 H 1.09005 * 109.46956 * 59.99695 * 1 2 3 30 30 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47017 * 240.00052 * 2 1 3 32 32 H 1.08999 * 109.47277 * 120.00521 * 2 1 3 33 33 H 1.09002 * 109.47152 * 90.00231 * 8 7 6 34 34 H 1.09001 * 109.46980 * 330.00331 * 8 7 6 35 35 H 1.09004 * 109.47113 * 210.00312 * 8 7 6 36 36 H 1.09001 * 109.46895 * 299.99873 * 15 14 12 37 37 H 1.08999 * 109.47429 * 60.00356 * 15 14 12 38 38 H 1.09001 * 109.47365 * 299.99675 * 16 15 14 39 39 H 1.09002 * 109.47484 * 60.00007 * 16 15 14 40 40 H 1.09001 * 109.46793 * 300.00140 * 17 16 15 41 41 H 1.09002 * 109.46806 * 59.99707 * 17 16 15 42 42 H 0.97005 * 119.99710 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.47494 * 269.97819 * 27 26 11 44 44 H 1.09000 * 109.47552 * 29.97577 * 27 26 11 45 45 H 1.08998 * 109.47296 * 149.97822 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0904 0.5817 0.0005 6 6 3.9130 2.9062 0.0011 7 6 4.2271 3.6663 -1.1110 8 6 4.0520 3.2424 -2.5466 9 7 4.7198 4.8430 -0.6945 10 1 5.0221 5.5614 -1.2720 11 6 4.7249 4.8707 0.6836 12 6 5.1858 5.9848 1.5184 13 8 5.1481 5.8925 2.7303 14 8 5.6515 7.1117 0.9421 15 6 6.0912 8.1731 1.8301 16 6 6.5827 9.3611 1.0007 17 6 7.0455 10.4797 1.9364 18 6 7.5290 11.6501 1.1195 19 1 7.5087 11.6008 0.0407 20 6 7.9983 12.7833 1.7491 21 7 8.0234 12.8431 3.0627 22 14 8.5983 14.2339 0.7365 23 1 7.4917 14.7313 -0.1198 24 1 9.0473 15.3196 1.6446 25 1 9.7324 13.8040 -0.1204 26 6 4.2336 3.6820 1.1378 27 6 4.0643 3.2737 2.5785 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.0600 3.5328 -2.8927 34 1 4.1608 2.1605 -2.6218 35 1 4.8085 3.7275 -3.1635 36 1 5.2590 8.4883 2.4595 37 1 6.9038 7.8080 2.4582 38 1 7.4151 9.0455 0.3717 39 1 5.7705 9.7263 0.3722 40 1 6.2128 10.7952 2.5651 41 1 7.8576 10.1147 2.5652 42 1 8.3533 13.6406 3.5056 43 1 4.9731 2.7825 2.9262 44 1 3.8739 4.1579 3.1868 45 1 3.2235 2.5854 2.6647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025394192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:08 Heat of formation + Delta-G solvation = -175.926412 kcal Electronic energy + Delta-G solvation = -26357.738978 eV Core-core repulsion = 22339.589892 eV Total energy + Delta-G solvation = -4018.149086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.99055 -41.35105 -40.85778 -37.89634 -37.60486 -35.95898 -34.27514 -33.75668 -33.11549 -32.30118 -29.40252 -29.19309 -27.81997 -25.84037 -24.97458 -23.49283 -22.83071 -22.19176 -21.17895 -20.57967 -19.68848 -18.62938 -18.47803 -17.78126 -17.77593 -17.56679 -16.94781 -16.50144 -16.30974 -16.22592 -15.42761 -15.10925 -14.74456 -14.56757 -14.43792 -14.20661 -14.10845 -13.89420 -13.82689 -13.77409 -13.61189 -13.32579 -13.27084 -12.93839 -12.81107 -12.73952 -12.53922 -12.49102 -12.43353 -12.11030 -11.89074 -11.76477 -11.50625 -11.45683 -11.44334 -11.25787 -10.56908 -10.13992 -9.45658 -8.21794 -6.33518 0.00076 0.88367 0.93740 1.40109 1.44121 1.44441 1.52767 1.61613 1.83013 2.06729 2.41186 3.12125 3.50647 3.60148 3.70034 3.85813 3.98859 4.03430 4.04559 4.10108 4.11593 4.33485 4.38661 4.39266 4.50086 4.64769 4.66245 4.77586 4.78521 4.83460 4.87125 4.96006 4.98358 5.03975 5.06654 5.15957 5.26211 5.33766 5.41543 5.48088 5.53102 5.63101 5.79582 6.18123 6.18895 6.56211 6.64866 6.82266 7.36039 8.90016 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029173 B = 0.001934 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.562374 B =14472.290695 C =14982.094742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.561 3.439 5 O -0.526 6.526 6 C -0.247 4.247 7 C 0.149 3.851 8 C -0.100 4.100 9 N -0.498 5.498 10 H 0.444 0.556 11 C -0.059 4.059 12 C 0.533 3.467 13 O -0.522 6.522 14 O -0.356 6.356 15 C 0.081 3.919 16 C -0.093 4.093 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.066 0.934 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.024 4.024 27 C -0.099 4.099 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.069 0.931 40 H -0.003 1.003 41 H -0.003 1.003 42 H 0.264 0.736 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 -26.099 -12.627 32.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.404 3.596 5 O -0.415 6.415 6 C -0.254 4.254 7 C 0.023 3.977 8 C -0.157 4.157 9 N -0.095 5.095 10 H 0.286 0.714 11 C -0.167 4.167 12 C 0.379 3.621 13 O -0.412 6.412 14 O -0.273 6.273 15 C 0.008 3.992 16 C -0.130 4.130 17 C -0.012 4.012 18 C -0.582 4.582 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.032 4.032 27 C -0.155 4.155 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.376 -26.101 -12.151 32.181 hybrid contribution 0.743 1.167 0.233 1.403 sum -13.633 -24.934 -11.918 30.815 Atomic orbital electron populations 1.21837 0.90502 1.04413 1.03691 1.23385 0.97034 0.78892 1.02998 1.86692 1.23039 1.33950 1.83239 1.20106 0.80634 0.88114 0.70713 1.90842 1.61295 1.43115 1.46229 1.18322 1.18021 0.95325 0.93765 1.21215 0.95216 0.84254 0.97008 1.20818 1.05887 1.03424 0.85585 1.41554 1.47129 1.15240 1.05533 0.71359 1.18419 1.19262 0.95961 0.83059 1.20002 0.74381 0.81434 0.86271 1.90863 1.53408 1.81655 1.15305 1.86504 1.73865 1.24897 1.42025 1.23199 0.99196 0.84805 0.92042 1.21461 1.00880 0.92190 0.98475 1.18941 0.95046 0.92664 0.94592 1.21590 1.42354 1.00443 0.93801 0.91563 1.26009 0.95870 1.01957 0.96094 1.70098 1.47667 1.29891 1.09610 0.85447 0.79039 0.77944 0.78297 1.19025 1.21039 1.19068 1.19715 0.96900 0.90394 0.96151 1.20494 1.02669 1.02633 0.89743 0.91688 0.91060 0.88025 0.90448 0.91309 0.87093 0.89412 0.87613 0.91566 0.91706 0.91342 0.91250 0.98425 0.98494 0.92713 0.90411 0.90285 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 71.98 0.74 -0.40 16 2 C 0.05 0.66 6.20 71.98 0.45 1.10 16 3 O -0.35 -6.71 10.23 -56.66 -0.58 -7.29 16 4 C 0.56 12.63 7.13 70.19 0.50 13.13 16 5 O -0.53 -14.22 16.90 19.73 0.33 -13.89 16 6 C -0.25 -5.52 6.01 -20.13 -0.12 -5.64 16 7 C 0.15 2.47 7.21 42.22 0.30 2.77 16 8 C -0.10 -0.79 10.24 71.24 0.73 -0.06 16 9 N -0.50 -8.98 6.01 -171.69 -1.03 -10.02 16 10 H 0.44 5.71 8.96 -92.71 -0.83 4.88 16 11 C -0.06 -1.50 7.02 39.97 0.28 -1.22 16 12 C 0.53 16.67 7.93 70.02 0.56 17.22 16 13 O -0.52 -18.90 14.49 19.50 0.28 -18.61 16 14 O -0.36 -11.24 10.23 -57.87 -0.59 -11.83 16 15 C 0.08 2.91 5.48 71.98 0.39 3.31 16 16 C -0.09 -3.69 5.53 30.60 0.17 -3.52 16 17 C 0.02 1.28 4.97 29.85 0.15 1.43 16 18 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 19 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 20 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 21 N -0.93 -56.35 13.29 21.44 0.28 -56.07 16 22 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C -0.02 -0.62 6.21 -19.54 -0.12 -0.74 16 27 C -0.10 -2.38 9.63 71.23 0.69 -1.69 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.09 0.76 7.93 -2.39 -0.02 0.74 16 35 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.20 16 42 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 2.11 6.41 -2.39 -0.02 2.09 16 45 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 Total: -1.00 -73.26 391.81 6.30 -66.95 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.17 Total: 9.24 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.41 Total: -3.96 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -0.75 Total: -66.08 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.56 Total: -51.62 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.26 6.30 -66.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025394192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.974 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds