Wall clock time and date at job start Tue Mar 31 2020 13:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.46803 * 2 1 4 4 C 1.34873 * 117.00022 * 179.97438 * 3 2 1 5 5 O 1.21603 * 119.99781 * 359.97438 * 4 3 2 6 6 C 1.46643 * 120.00309 * 180.02562 * 4 3 2 7 7 N 1.37835 * 125.84788 * 0.32223 * 6 4 3 8 8 H 0.97004 * 125.39118 * 359.97438 * 7 6 4 9 9 C 1.34197 * 109.22759 * 180.15642 * 7 6 4 10 10 C 1.50703 * 125.79887 * 179.83679 * 9 7 6 11 11 C 1.38323 * 108.40155 * 359.56971 * 9 7 6 12 12 C 1.47256 * 126.46029 * 180.23962 * 11 9 7 13 13 O 1.21533 * 119.99455 * 90.03079 * 12 11 9 14 14 O 1.34755 * 120.00321 * 270.02818 * 12 11 9 15 15 C 1.45204 * 117.00338 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47590 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47343 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47060 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99997 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99810 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99944 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99782 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47104 * 90.00047 * 22 20 18 24 24 H 1.48508 * 109.46859 * 209.99976 * 22 20 18 25 25 H 1.48501 * 109.47374 * 329.99963 * 22 20 18 26 26 C 1.36417 * 125.84876 * 180.02562 * 6 4 3 27 27 C 1.50694 * 126.50418 * 0.03863 * 26 6 4 28 28 H 1.09002 * 109.47484 * 60.00007 * 1 2 3 29 29 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47365 * 299.99675 * 1 2 3 31 31 H 1.09001 * 109.47365 * 240.00325 * 2 1 3 32 32 H 1.08999 * 109.46765 * 119.99962 * 2 1 3 33 33 H 1.09002 * 109.47152 * 269.68986 * 10 9 7 34 34 H 1.09001 * 109.46980 * 149.69086 * 10 9 7 35 35 H 1.09004 * 109.47113 * 29.69067 * 10 9 7 36 36 H 1.09005 * 109.46898 * 299.99972 * 15 14 12 37 37 H 1.08999 * 109.47236 * 59.99405 * 15 14 12 38 38 H 1.09005 * 109.47017 * 299.99947 * 16 15 14 39 39 H 1.09005 * 109.46956 * 59.99695 * 16 15 14 40 40 H 1.09000 * 109.46856 * 300.00121 * 17 16 15 41 41 H 1.08999 * 109.47076 * 59.99702 * 17 16 15 42 42 H 0.96998 * 119.99784 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.47494 * 269.97819 * 27 26 6 44 44 H 1.09000 * 109.47552 * 29.97577 * 27 26 6 45 45 H 1.08998 * 109.47296 * 149.97822 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3510 1.5458 0.0005 5 8 4.0918 0.5814 0.0015 6 6 3.9115 2.9009 0.0011 7 7 3.1876 4.0738 0.0075 8 1 2.2196 4.1366 0.0120 9 6 4.0338 5.1154 0.0025 10 6 3.6409 6.5703 0.0033 11 6 5.3278 4.6267 0.0026 12 6 6.5649 5.4255 0.0029 13 8 7.0754 5.7544 1.0556 14 8 7.1308 5.7918 -1.1639 15 6 8.3493 6.5778 -1.0876 16 6 8.8408 6.8955 -2.5012 17 6 10.1243 7.7243 -2.4207 18 6 10.6080 8.0377 -3.8131 19 1 10.0555 7.6810 -4.6698 20 6 11.7566 8.7789 -3.9934 21 7 12.4297 9.2128 -2.9501 22 14 12.3566 9.1667 -5.7194 23 1 11.7565 10.4459 -6.1762 24 1 13.8367 9.2886 -5.7132 25 1 11.9537 8.0740 -6.6407 26 6 5.2387 3.2165 0.0012 27 6 6.3910 2.2455 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5465 6.9217 -1.0242 34 1 4.4053 7.1528 0.5177 35 1 2.6868 6.6888 0.5170 36 1 8.1492 7.5074 -0.5546 37 1 9.1142 6.0117 -0.5560 38 1 9.0410 5.9657 -3.0338 39 1 8.0760 7.4614 -3.0332 40 1 9.9237 8.6540 -1.8883 41 1 10.8892 7.1587 -1.8886 42 1 13.2379 9.7339 -3.0770 43 1 6.6694 2.0105 1.0272 44 1 6.0952 1.3312 -0.5145 45 1 7.2421 2.6923 -0.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026459574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:03 Heat of formation + Delta-G solvation = -156.123743 kcal Electronic energy + Delta-G solvation = -26443.895629 eV Core-core repulsion = 22426.605251 eV Total energy + Delta-G solvation = -4017.290378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.11026 -40.39160 -39.66634 -37.00250 -36.27184 -33.94578 -33.37048 -32.56903 -31.87300 -31.52803 -28.53318 -27.24373 -27.06015 -24.57844 -23.58845 -22.62020 -21.98830 -20.37324 -20.10135 -19.49870 -18.89388 -17.21939 -17.15638 -16.99462 -16.39868 -16.26020 -15.65295 -15.36628 -15.34084 -14.45612 -14.35758 -14.21216 -13.81108 -13.64507 -13.34228 -13.24401 -13.13381 -13.05416 -12.62974 -12.48334 -12.39226 -12.15674 -12.12524 -12.10492 -11.85794 -11.82949 -11.00408 -10.94898 -10.82656 -10.67703 -10.60390 -10.40581 -10.32907 -9.68018 -9.49108 -9.20110 -9.12544 -8.58503 -8.36534 -6.01400 -4.04184 0.83267 1.83316 2.07020 2.33990 2.52526 2.68856 3.19343 3.32489 3.38736 3.42599 4.27868 4.32565 4.44052 4.45442 4.49103 4.62110 4.74996 4.78031 5.02997 5.14102 5.16660 5.24552 5.26414 5.34557 5.38464 5.45007 5.54815 5.62328 5.65027 5.67123 5.82533 5.86143 6.00072 6.06911 6.21099 6.40888 6.54580 6.58164 6.86859 6.87564 7.02118 7.37168 7.63169 7.74438 7.96915 7.99734 8.38647 9.02104 9.59916 11.09990 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022270 B = 0.002035 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.967430 B =13755.030789 C =14061.412192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.365 6.365 4 C 0.540 3.460 5 O -0.494 6.494 6 C -0.054 4.054 7 N -0.515 5.515 8 H 0.428 0.572 9 C 0.127 3.873 10 C -0.102 4.102 11 C -0.207 4.207 12 C 0.541 3.459 13 O -0.501 6.501 14 O -0.349 6.349 15 C 0.066 3.934 16 C -0.109 4.109 17 C 0.024 3.976 18 C -0.521 4.521 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.007 4.007 27 C -0.103 4.103 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.909 -14.889 7.859 31.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.283 6.283 4 C 0.386 3.614 5 O -0.381 6.381 6 C -0.162 4.162 7 N -0.111 5.111 8 H 0.267 0.733 9 C 0.004 3.996 10 C -0.159 4.159 11 C -0.215 4.215 12 C 0.383 3.617 13 O -0.389 6.389 14 O -0.265 6.265 15 C -0.007 4.007 16 C -0.146 4.146 17 C -0.014 4.014 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.015 4.015 27 C -0.160 4.160 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.534 -15.072 8.206 31.599 hybrid contribution 0.032 0.236 -0.774 0.810 sum -26.501 -14.836 7.431 31.267 Atomic orbital electron populations 1.21824 0.92460 1.03221 1.03515 1.23059 0.95309 0.79485 1.02997 1.86529 1.23801 1.33150 1.84848 1.19636 0.80543 0.87837 0.73399 1.90893 1.60064 1.40736 1.46437 1.18485 0.90470 0.83384 1.23852 1.41442 1.09431 1.04439 1.55749 0.73298 1.20706 0.88091 0.90653 1.00156 1.20641 1.03320 0.87430 1.04494 1.18390 0.90532 0.92643 1.19896 1.20091 0.82853 0.76482 0.82273 1.90855 1.62681 1.52331 1.33028 1.86670 1.41167 1.65494 1.33172 1.23544 0.82036 0.93760 1.01364 1.21762 0.99960 1.01172 0.91730 1.19057 0.90093 0.94501 0.97705 1.21178 1.09012 1.33418 0.92298 0.92434 1.25030 0.96650 0.95858 0.96950 1.69967 1.17357 1.36737 1.29269 0.86552 0.77855 0.78720 0.84623 1.20656 1.21211 1.19827 1.19599 0.92552 0.92274 0.97031 1.20554 0.94368 0.97778 1.03266 0.91427 0.89983 0.91473 0.90878 0.90931 0.88920 0.89020 0.90296 0.91434 0.91411 0.92105 0.92163 0.96219 0.96181 0.92924 0.90332 0.89349 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 10.29 37.16 0.38 -0.21 16 2 C 0.07 0.42 6.20 37.16 0.23 0.65 16 3 O -0.37 -3.16 10.23 -40.97 -0.42 -3.58 16 4 C 0.54 5.95 7.93 34.12 0.27 6.22 16 5 O -0.49 -6.43 14.49 -19.34 -0.28 -6.71 16 6 C -0.05 -0.61 7.02 -82.43 -0.58 -1.18 16 7 N -0.51 -4.38 6.01 -5.62 -0.03 -4.42 16 8 H 0.43 2.18 8.96 -40.82 -0.37 1.81 16 9 C 0.13 1.29 7.21 -81.53 -0.59 0.70 16 10 C -0.10 -0.73 10.24 36.01 0.37 -0.36 16 11 C -0.21 -2.84 6.01 -105.04 -0.63 -3.47 16 12 C 0.54 8.94 7.13 34.40 0.25 9.18 16 13 O -0.50 -9.46 16.90 -19.29 -0.33 -9.78 16 14 O -0.35 -6.10 10.23 -40.64 -0.42 -6.52 16 15 C 0.07 1.23 5.48 37.16 0.20 1.44 16 16 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.01 -0.09 6.21 -104.12 -0.65 -0.74 16 27 C -0.10 -1.29 9.63 36.00 0.35 -0.94 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.08 6.41 -51.93 -0.33 0.75 16 45 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -34.32 391.81 -7.94 -42.26 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -6.99 Total: -3.49 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.09 Total: -4.17 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.70 Total: -30.51 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.44 Total: -26.60 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.32 -7.94 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026459574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.866 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds