Wall clock time and date at job start Tue Mar 31 2020 13:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.46803 * 2 1 4 4 C 1.34873 * 117.00022 * 179.97438 * 3 2 1 5 5 O 1.21603 * 119.99781 * 359.97438 * 4 3 2 6 6 C 1.46643 * 120.00309 * 180.02562 * 4 3 2 7 7 N 1.37835 * 125.84788 * 0.32223 * 6 4 3 8 8 H 0.97004 * 125.39118 * 359.97438 * 7 6 4 9 9 C 1.34197 * 109.22759 * 180.15642 * 7 6 4 10 10 C 1.50703 * 125.79887 * 179.83679 * 9 7 6 11 11 C 1.38323 * 108.40155 * 359.56971 * 9 7 6 12 12 C 1.47256 * 126.46029 * 180.23962 * 11 9 7 13 13 O 1.21533 * 119.99455 * 90.03079 * 12 11 9 14 14 O 1.34755 * 120.00321 * 270.02818 * 12 11 9 15 15 C 1.45204 * 117.00338 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47590 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47343 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47060 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99997 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99810 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99944 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99782 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47104 * 90.00047 * 22 20 18 24 24 H 1.48508 * 109.46859 * 209.99976 * 22 20 18 25 25 H 1.48501 * 109.47374 * 329.99963 * 22 20 18 26 26 C 1.36417 * 125.84876 * 180.02562 * 6 4 3 27 27 C 1.50694 * 126.50418 * 0.03863 * 26 6 4 28 28 H 1.09002 * 109.47484 * 60.00007 * 1 2 3 29 29 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47365 * 299.99675 * 1 2 3 31 31 H 1.09001 * 109.47365 * 240.00325 * 2 1 3 32 32 H 1.08999 * 109.46765 * 119.99962 * 2 1 3 33 33 H 1.09002 * 109.47152 * 269.68986 * 10 9 7 34 34 H 1.09001 * 109.46980 * 149.69086 * 10 9 7 35 35 H 1.09004 * 109.47113 * 29.69067 * 10 9 7 36 36 H 1.09005 * 109.46898 * 299.99972 * 15 14 12 37 37 H 1.08999 * 109.47236 * 59.99405 * 15 14 12 38 38 H 1.09005 * 109.47017 * 299.99947 * 16 15 14 39 39 H 1.09005 * 109.46956 * 59.99695 * 16 15 14 40 40 H 1.09000 * 109.46856 * 300.00121 * 17 16 15 41 41 H 1.08999 * 109.47076 * 59.99702 * 17 16 15 42 42 H 0.96998 * 119.99784 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.47494 * 269.97819 * 27 26 6 44 44 H 1.09000 * 109.47552 * 29.97577 * 27 26 6 45 45 H 1.08998 * 109.47296 * 149.97822 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3510 1.5458 0.0005 5 8 4.0918 0.5814 0.0015 6 6 3.9115 2.9009 0.0011 7 7 3.1876 4.0738 0.0075 8 1 2.2196 4.1366 0.0120 9 6 4.0338 5.1154 0.0025 10 6 3.6409 6.5703 0.0033 11 6 5.3278 4.6267 0.0026 12 6 6.5649 5.4255 0.0029 13 8 7.0754 5.7544 1.0556 14 8 7.1308 5.7918 -1.1639 15 6 8.3493 6.5778 -1.0876 16 6 8.8408 6.8955 -2.5012 17 6 10.1243 7.7243 -2.4207 18 6 10.6080 8.0377 -3.8131 19 1 10.0555 7.6810 -4.6698 20 6 11.7566 8.7789 -3.9934 21 7 12.4297 9.2128 -2.9501 22 14 12.3566 9.1667 -5.7194 23 1 11.7565 10.4459 -6.1762 24 1 13.8367 9.2886 -5.7132 25 1 11.9537 8.0740 -6.6407 26 6 5.2387 3.2165 0.0012 27 6 6.3910 2.2455 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5465 6.9217 -1.0242 34 1 4.4053 7.1528 0.5177 35 1 2.6868 6.6888 0.5170 36 1 8.1492 7.5074 -0.5546 37 1 9.1142 6.0117 -0.5560 38 1 9.0410 5.9657 -3.0338 39 1 8.0760 7.4614 -3.0332 40 1 9.9237 8.6540 -1.8883 41 1 10.8892 7.1587 -1.8886 42 1 13.2379 9.7339 -3.0770 43 1 6.6694 2.0105 1.0272 44 1 6.0952 1.3312 -0.5145 45 1 7.2421 2.6923 -0.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026459574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:02 Heat of formation + Delta-G solvation = -175.374886 kcal Electronic energy + Delta-G solvation = -26444.730421 eV Core-core repulsion = 22426.605251 eV Total energy + Delta-G solvation = -4018.125170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.99592 -41.35429 -40.86247 -37.78751 -37.73992 -35.90399 -34.28434 -33.69867 -33.17821 -32.35122 -29.55701 -28.81485 -28.05437 -25.91544 -24.68437 -23.81123 -22.77873 -22.14342 -21.11732 -20.56549 -19.75905 -18.71979 -18.20854 -17.95546 -17.73069 -17.64350 -16.92473 -16.48662 -16.38079 -16.10507 -15.46831 -14.99327 -14.80616 -14.67646 -14.50966 -14.16035 -14.06632 -13.96069 -13.75880 -13.70208 -13.58562 -13.34054 -13.29381 -12.95998 -12.82916 -12.75245 -12.55673 -12.50836 -12.40369 -12.05925 -11.96036 -11.67861 -11.57870 -11.45010 -11.39219 -11.22586 -10.55292 -10.13257 -9.45776 -8.19921 -6.31165 -0.02073 0.85890 0.95507 1.41213 1.42598 1.44104 1.55126 1.61150 1.82059 2.06762 2.43105 3.13870 3.51986 3.62157 3.66458 3.86001 4.00676 4.02231 4.04831 4.07535 4.10695 4.33475 4.34851 4.43365 4.49963 4.63972 4.65434 4.75840 4.82035 4.84290 4.87712 4.92153 4.98136 5.04381 5.09303 5.11407 5.26527 5.35041 5.39021 5.49530 5.52259 5.66374 5.82209 6.21252 6.22089 6.56067 6.64433 6.84570 7.38052 8.92133 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022270 B = 0.002035 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.967430 B =13755.030789 C =14061.412192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.358 6.358 4 C 0.544 3.456 5 O -0.519 6.519 6 C -0.055 4.055 7 N -0.491 5.491 8 H 0.447 0.553 9 C 0.152 3.848 10 C -0.103 4.103 11 C -0.248 4.248 12 C 0.549 3.451 13 O -0.530 6.530 14 O -0.349 6.349 15 C 0.075 3.925 16 C -0.093 4.093 17 C 0.026 3.974 18 C -0.543 4.543 19 H 0.064 0.936 20 C -0.001 4.001 21 N -0.932 5.932 22 Si 0.968 3.032 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.263 1.263 26 C -0.028 4.028 27 C -0.100 4.100 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.000 1.000 41 H -0.004 1.004 42 H 0.264 0.736 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.658 -15.022 6.815 33.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.275 6.275 4 C 0.390 3.610 5 O -0.409 6.409 6 C -0.163 4.163 7 N -0.089 5.089 8 H 0.290 0.710 9 C 0.026 3.974 10 C -0.160 4.160 11 C -0.255 4.255 12 C 0.392 3.608 13 O -0.419 6.419 14 O -0.265 6.265 15 C 0.001 3.999 16 C -0.131 4.131 17 C -0.012 4.012 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.199 4.199 21 N -0.572 5.572 22 Si 0.793 3.207 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.187 1.187 26 C -0.036 4.036 27 C -0.157 4.157 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.018 0.982 41 H 0.015 0.985 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -29.349 -15.223 7.159 33.828 hybrid contribution 0.797 0.233 -0.398 0.921 sum -28.552 -14.990 6.760 32.948 Atomic orbital electron populations 1.21838 0.90141 1.04533 1.03825 1.23363 0.97056 0.78324 1.02968 1.86529 1.22191 1.34602 1.84215 1.19597 0.81181 0.87364 0.72823 1.90881 1.60852 1.41463 1.47670 1.18411 0.90107 0.84299 1.23493 1.41377 1.10254 1.03159 1.54062 0.70955 1.21034 0.86915 0.92119 0.97349 1.20813 1.04639 0.84810 1.05725 1.18350 0.90655 0.92794 1.23704 1.20535 0.83170 0.75740 0.81316 1.90832 1.63702 1.53608 1.33796 1.86659 1.40449 1.65365 1.34062 1.23220 0.82726 0.94097 0.99814 1.21459 0.97926 1.00497 0.93201 1.18939 0.91772 0.94031 0.96410 1.21620 1.09487 1.33552 0.93405 0.91739 1.25999 0.96825 0.95587 1.01483 1.70100 1.17885 1.37464 1.31787 0.85397 0.77226 0.78940 0.79176 1.19631 1.20866 1.18706 1.19707 0.93557 0.92152 0.98134 1.20497 0.94217 0.97770 1.03196 0.91129 0.88177 0.91092 0.91026 0.90996 0.87484 0.90428 0.86633 0.91219 0.91998 0.91806 0.91220 0.98174 0.98526 0.92716 0.90250 0.89336 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 71.98 0.74 -0.04 16 2 C 0.06 0.64 6.20 71.98 0.45 1.08 16 3 O -0.36 -5.56 10.23 -57.87 -0.59 -6.15 16 4 C 0.54 11.43 7.93 70.02 0.56 11.99 16 5 O -0.52 -13.42 14.49 19.50 0.28 -13.14 16 6 C -0.05 -1.16 7.02 39.97 0.28 -0.88 16 7 N -0.49 -7.14 6.01 -171.69 -1.03 -8.18 16 8 H 0.45 2.99 8.96 -92.71 -0.83 2.15 16 9 C 0.15 2.77 7.21 42.22 0.30 3.08 16 10 C -0.10 -1.19 10.24 71.24 0.73 -0.46 16 11 C -0.25 -6.70 6.01 -20.13 -0.12 -6.82 16 12 C 0.55 18.31 7.13 70.19 0.50 18.81 16 13 O -0.53 -20.46 16.90 19.73 0.33 -20.12 16 14 O -0.35 -12.27 10.23 -56.66 -0.58 -12.85 16 15 C 0.07 2.85 5.48 71.98 0.39 3.24 16 16 C -0.09 -3.92 5.53 30.59 0.17 -3.76 16 17 C 0.03 1.36 4.97 29.85 0.15 1.51 16 18 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 19 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 20 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 21 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 22 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 26 C -0.03 -0.74 6.21 -19.54 -0.12 -0.86 16 27 C -0.10 -2.59 9.63 71.23 0.69 -1.90 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.19 7.93 -2.39 -0.02 1.18 16 35 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 40 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.09 2.25 6.41 -2.39 -0.02 2.23 16 45 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 Total: -1.00 -75.09 391.81 6.30 -68.78 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.17 Total: 7.20 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.41 Total: -5.22 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.75 Total: -64.71 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -0.56 Total: -52.25 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.09 6.30 -68.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026459574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.592 kcal (2) G-P(sol) polarization free energy of solvation -75.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds