Wall clock time and date at job start Tue Mar 31 2020 14:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47629 * 7.49282 * 3 2 1 5 5 N 1.46504 * 109.47316 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99734 * 90.00116 * 5 4 3 7 7 C 1.50705 * 109.46839 * 89.99727 * 6 5 4 8 8 H 1.07995 * 120.00469 * 359.73290 * 7 6 5 9 9 C 1.37874 * 119.99645 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00429 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99911 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47033 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47319 * 120.00040 * 11 9 7 14 14 H 1.48497 * 109.47260 * 240.00100 * 11 9 7 15 15 C 1.34774 * 119.99955 * 270.00356 * 5 4 3 16 16 O 1.21279 * 119.99685 * 180.02562 * 15 5 4 17 17 C 1.50694 * 120.00249 * 359.97438 * 15 5 4 18 18 N 1.46901 * 109.47129 * 180.02562 * 17 15 5 19 19 C 1.47849 * 111.00092 * 293.18153 * 18 17 15 20 20 C 1.54902 * 104.79847 * 213.63844 * 19 18 17 21 21 C 1.55136 * 101.65564 * 37.06693 * 20 19 18 22 22 C 1.47439 * 111.00281 * 172.33806 * 18 17 15 23 23 H 1.08997 * 109.89084 * 242.66200 * 22 18 17 24 24 C 1.53005 * 109.88840 * 3.85341 * 22 18 17 25 25 C 1.50694 * 109.47270 * 182.48739 * 24 22 18 26 26 O 1.20825 * 120.00279 * 5.77204 * 25 24 22 27 27 O 1.34234 * 119.99995 * 185.77755 * 25 24 22 28 28 H 1.09005 * 109.47383 * 247.48874 * 3 2 1 29 29 H 1.09010 * 109.46843 * 127.49721 * 3 2 1 30 30 H 1.09003 * 109.46750 * 60.00100 * 4 3 2 31 31 H 1.08993 * 109.47282 * 300.00249 * 4 3 2 32 32 H 1.09001 * 109.47002 * 330.00691 * 6 5 4 33 33 H 1.08991 * 109.47199 * 210.00128 * 6 5 4 34 34 H 0.96996 * 120.00202 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47547 * 300.00085 * 17 15 5 36 36 H 1.09004 * 109.47063 * 60.00615 * 17 15 5 37 37 H 1.09005 * 110.37039 * 332.46387 * 19 18 17 38 38 H 1.08995 * 110.37545 * 94.80279 * 19 18 17 39 39 H 1.09009 * 110.99137 * 278.97987 * 20 19 18 40 40 H 1.08997 * 111.02705 * 155.17632 * 20 19 18 41 41 H 1.08997 * 110.71264 * 205.96659 * 21 20 19 42 42 H 1.09003 * 110.85823 * 82.80012 * 21 20 19 43 43 H 1.09008 * 109.46870 * 302.48729 * 24 22 18 44 44 H 1.08996 * 109.47115 * 62.48126 * 24 22 18 45 45 H 0.96698 * 116.99898 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1188 -1.4292 -0.1881 5 7 4.5838 -1.4284 -0.1887 6 6 5.3168 -1.5933 1.0689 7 6 5.5688 -3.0586 1.3151 8 1 5.2143 -3.7938 0.6079 9 6 6.2477 -3.4609 2.4457 10 7 6.6749 -2.5660 3.3096 11 14 6.5607 -5.2771 2.7504 12 1 5.9836 -6.0725 1.6370 13 1 8.0235 -5.5215 2.8263 14 1 5.9243 -5.6812 4.0298 15 6 5.2571 -1.2759 -1.3462 16 8 6.4699 -1.2757 -1.3467 17 6 4.5030 -1.1068 -2.6399 18 7 5.4572 -0.9613 -3.7474 19 6 6.2138 0.3036 -3.6321 20 6 6.4587 0.7528 -5.0942 21 6 5.1308 0.3329 -5.7777 22 6 4.7632 -0.9764 -5.0482 23 1 5.0939 -1.8333 -5.6350 24 6 3.2503 -1.0436 -4.8302 25 6 2.5535 -1.1201 -6.1642 26 8 3.2009 -1.2260 -7.1788 27 8 1.2134 -1.0704 -6.2253 28 1 2.9712 0.3943 0.9494 29 1 2.9710 0.6264 -0.8154 30 1 2.7556 -1.8227 -1.1375 31 1 2.7557 -2.0549 0.6272 32 1 4.7278 -1.1832 1.8893 33 1 6.2689 -1.0664 1.0063 34 1 7.1528 -2.8490 4.1048 35 1 3.8772 -1.9823 -2.8128 36 1 3.8756 -0.2174 -2.5812 37 1 5.6253 1.0506 -3.0992 38 1 7.1626 0.1333 -3.1234 39 1 7.3062 0.2226 -5.5289 40 1 6.6040 1.8315 -5.1529 41 1 5.2853 0.1512 -6.8412 42 1 4.3601 1.0885 -5.6253 43 1 3.0069 -1.9284 -4.2419 44 1 2.9198 -0.1514 -4.2983 45 1 0.8118 -1.1235 -7.1033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042162787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:54 Heat of formation + Delta-G solvation = -84.454281 kcal Electronic energy + Delta-G solvation = -28122.716928 eV Core-core repulsion = 24140.827122 eV Total energy + Delta-G solvation = -3981.889806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91720 -39.76581 -38.42156 -36.86595 -36.38502 -35.22167 -33.01938 -32.45484 -31.77886 -30.85885 -28.02943 -26.87021 -25.98688 -24.03781 -22.73420 -22.41595 -21.33903 -19.80210 -18.56124 -18.33355 -17.68485 -17.29596 -16.49938 -16.34560 -16.23235 -15.82502 -15.46064 -15.13378 -14.98893 -14.69569 -14.13365 -13.96531 -13.78668 -13.55119 -13.13289 -12.99080 -12.80269 -12.57900 -12.46259 -12.38565 -12.12030 -11.87343 -11.83277 -11.71547 -11.37081 -11.28602 -11.12355 -11.03044 -10.98681 -10.84492 -10.80930 -10.75112 -10.63305 -10.18314 -9.68123 -9.00651 -8.47427 -8.27030 -7.83673 -6.08877 -4.13136 1.90566 2.68470 2.69876 2.76680 3.27700 3.28766 3.37365 3.40853 3.49471 3.91274 4.18112 4.26930 4.41738 4.51795 4.62839 4.84100 4.89002 4.96771 4.98599 5.06899 5.10923 5.17149 5.22096 5.27366 5.39216 5.40886 5.43874 5.50804 5.75885 5.77945 5.83494 5.95479 6.02670 6.16100 6.19467 6.27101 6.78493 6.92680 7.02875 7.35140 7.43530 7.53107 7.58685 7.87724 8.17310 8.25713 8.85573 9.00858 9.52722 10.99263 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.003730 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.561583 B = 7505.308660 C = 8598.057039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.246 3.754 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.508 3.492 16 O -0.512 6.512 17 C 0.019 3.981 18 N -0.499 5.499 19 C 0.047 3.953 20 C -0.131 4.131 21 C -0.135 4.135 22 C 0.085 3.915 23 H 0.100 0.900 24 C -0.139 4.139 25 C 0.482 3.518 26 O -0.511 6.511 27 O -0.519 6.519 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 7.601 -16.100 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.332 5.332 6 C 0.128 3.872 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.293 3.707 16 O -0.386 6.386 17 C -0.113 4.113 18 N -0.223 5.223 19 C -0.080 4.080 20 C -0.169 4.169 21 C -0.174 4.174 22 C -0.023 4.023 23 H 0.118 0.882 24 C -0.177 4.177 25 C 0.324 3.676 26 O -0.398 6.398 27 O -0.330 6.330 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.464 7.183 -15.752 19.271 hybrid contribution -0.426 -0.417 -0.231 0.640 sum -8.890 6.766 -15.983 19.500 Atomic orbital electron populations 1.81219 1.13021 1.08586 1.09254 1.29106 0.95099 0.93156 0.92898 1.19914 0.81355 1.01553 1.06410 1.21289 0.82468 0.93365 1.03765 1.48217 1.04650 1.71050 1.09320 1.19331 0.92544 0.97287 0.78084 1.21456 1.36431 0.92224 1.06441 0.92297 1.24908 0.95333 0.97823 0.95897 1.69925 1.38360 1.33242 1.11795 0.86474 0.78128 0.85070 0.77938 1.19775 1.20894 1.21049 1.20127 0.88290 0.77909 0.84359 1.90686 1.13526 1.48553 1.85853 1.22528 0.95005 1.02155 0.91565 1.63588 1.22985 1.36199 0.99506 1.23151 1.00063 0.88548 0.96238 1.22741 0.97667 1.00962 0.95521 1.22868 0.97590 0.95947 1.00959 1.22411 0.88458 1.00038 0.91402 0.88173 1.22239 0.96433 1.06348 0.92715 1.23412 0.80237 0.71725 0.92247 1.90728 1.66491 1.45146 1.37470 1.84561 1.22999 1.85311 1.40175 0.86417 0.87852 0.90896 0.88665 0.94820 0.93579 0.92756 0.87980 0.92229 0.93904 0.88315 0.90417 0.90860 0.89980 0.91947 0.86458 0.87538 0.73176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.19 18.54 42.15 0.78 -5.41 16 2 C 0.22 2.42 15.43 -20.76 -0.32 2.10 16 3 C -0.05 -0.48 6.02 -29.52 -0.18 -0.66 16 4 C 0.12 1.45 5.17 -4.04 -0.02 1.43 16 5 N -0.60 -10.38 2.46 -175.07 -0.43 -10.81 16 6 C 0.25 5.66 5.16 -5.19 -0.03 5.63 16 7 C -0.53 -13.83 9.39 -34.44 -0.32 -14.15 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 11 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 C 0.51 8.86 7.45 -10.99 -0.08 8.77 16 16 O -0.51 -11.39 14.44 5.56 0.08 -11.31 16 17 C 0.02 0.22 2.72 -4.98 -0.01 0.21 16 18 N -0.50 -6.40 4.91 -224.78 -1.10 -7.50 16 19 C 0.05 0.58 5.65 -2.30 -0.01 0.57 16 20 C -0.13 -1.30 7.08 -24.60 -0.17 -1.47 16 21 C -0.14 -1.29 5.43 -24.91 -0.14 -1.42 16 22 C 0.09 0.89 3.09 -66.72 -0.21 0.68 16 23 H 0.10 1.17 7.94 -51.93 -0.41 0.75 16 24 C -0.14 -1.14 3.96 -27.88 -0.11 -1.25 16 25 C 0.48 4.34 8.02 36.00 0.29 4.63 16 26 O -0.51 -5.95 15.65 -18.75 -0.29 -6.25 16 27 O -0.52 -3.69 13.42 -39.27 -0.53 -4.21 16 28 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 0.77 7.22 -51.92 -0.38 0.39 16 30 H 0.07 0.71 6.44 -51.93 -0.33 0.38 16 31 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.10 1.07 5.40 -51.93 -0.28 0.79 16 36 H 0.06 0.55 5.89 -51.93 -0.31 0.24 16 37 H 0.04 0.49 7.66 -51.93 -0.40 0.09 16 38 H 0.10 1.49 7.26 -51.93 -0.38 1.11 16 39 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 42 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 43 H 0.12 0.87 6.23 -51.92 -0.32 0.55 16 44 H 0.11 0.73 7.02 -51.93 -0.36 0.36 16 45 H 0.41 1.28 9.10 45.56 0.41 1.69 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -34.83 373.39 -7.16 -41.99 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.60 Total: -0.38 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.41 Total: 6.66 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.01 Total: -48.23 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.74 Total: -21.77 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.83 -7.16 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042162787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.463 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds