Wall clock time and date at job start Tue Mar 31 2020 14:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47629 * 7.49282 * 3 2 1 5 5 N 1.46504 * 109.47316 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99734 * 90.00116 * 5 4 3 7 7 C 1.50705 * 109.46839 * 89.99727 * 6 5 4 8 8 H 1.07995 * 120.00469 * 359.73290 * 7 6 5 9 9 C 1.37874 * 119.99645 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00429 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99911 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47033 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47319 * 120.00040 * 11 9 7 14 14 H 1.48497 * 109.47260 * 240.00100 * 11 9 7 15 15 C 1.34774 * 119.99955 * 270.00356 * 5 4 3 16 16 O 1.21279 * 119.99685 * 180.02562 * 15 5 4 17 17 C 1.50694 * 120.00249 * 359.97438 * 15 5 4 18 18 N 1.46901 * 109.47129 * 180.02562 * 17 15 5 19 19 C 1.47849 * 111.00092 * 293.18153 * 18 17 15 20 20 C 1.54902 * 104.79847 * 213.63844 * 19 18 17 21 21 C 1.55136 * 101.65564 * 37.06693 * 20 19 18 22 22 C 1.47439 * 111.00281 * 172.33806 * 18 17 15 23 23 H 1.08997 * 109.89084 * 242.66200 * 22 18 17 24 24 C 1.53005 * 109.88840 * 3.85341 * 22 18 17 25 25 C 1.50694 * 109.47270 * 182.48739 * 24 22 18 26 26 O 1.20825 * 120.00279 * 5.77204 * 25 24 22 27 27 O 1.34234 * 119.99995 * 185.77755 * 25 24 22 28 28 H 1.09005 * 109.47383 * 247.48874 * 3 2 1 29 29 H 1.09010 * 109.46843 * 127.49721 * 3 2 1 30 30 H 1.09003 * 109.46750 * 60.00100 * 4 3 2 31 31 H 1.08993 * 109.47282 * 300.00249 * 4 3 2 32 32 H 1.09001 * 109.47002 * 330.00691 * 6 5 4 33 33 H 1.08991 * 109.47199 * 210.00128 * 6 5 4 34 34 H 0.96996 * 120.00202 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47547 * 300.00085 * 17 15 5 36 36 H 1.09004 * 109.47063 * 60.00615 * 17 15 5 37 37 H 1.09005 * 110.37039 * 332.46387 * 19 18 17 38 38 H 1.08995 * 110.37545 * 94.80279 * 19 18 17 39 39 H 1.09009 * 110.99137 * 278.97987 * 20 19 18 40 40 H 1.08997 * 111.02705 * 155.17632 * 20 19 18 41 41 H 1.08997 * 110.71264 * 205.96659 * 21 20 19 42 42 H 1.09003 * 110.85823 * 82.80012 * 21 20 19 43 43 H 1.09008 * 109.46870 * 302.48729 * 24 22 18 44 44 H 1.08996 * 109.47115 * 62.48126 * 24 22 18 45 45 H 0.96698 * 116.99898 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1188 -1.4292 -0.1881 5 7 4.5838 -1.4284 -0.1887 6 6 5.3168 -1.5933 1.0689 7 6 5.5688 -3.0586 1.3151 8 1 5.2143 -3.7938 0.6079 9 6 6.2477 -3.4609 2.4457 10 7 6.6749 -2.5660 3.3096 11 14 6.5607 -5.2771 2.7504 12 1 5.9836 -6.0725 1.6370 13 1 8.0235 -5.5215 2.8263 14 1 5.9243 -5.6812 4.0298 15 6 5.2571 -1.2759 -1.3462 16 8 6.4699 -1.2757 -1.3467 17 6 4.5030 -1.1068 -2.6399 18 7 5.4572 -0.9613 -3.7474 19 6 6.2138 0.3036 -3.6321 20 6 6.4587 0.7528 -5.0942 21 6 5.1308 0.3329 -5.7777 22 6 4.7632 -0.9764 -5.0482 23 1 5.0939 -1.8333 -5.6350 24 6 3.2503 -1.0436 -4.8302 25 6 2.5535 -1.1201 -6.1642 26 8 3.2009 -1.2260 -7.1788 27 8 1.2134 -1.0704 -6.2253 28 1 2.9712 0.3943 0.9494 29 1 2.9710 0.6264 -0.8154 30 1 2.7556 -1.8227 -1.1375 31 1 2.7557 -2.0549 0.6272 32 1 4.7278 -1.1832 1.8893 33 1 6.2689 -1.0664 1.0063 34 1 7.1528 -2.8490 4.1048 35 1 3.8772 -1.9823 -2.8128 36 1 3.8756 -0.2174 -2.5812 37 1 5.6253 1.0506 -3.0992 38 1 7.1626 0.1333 -3.1234 39 1 7.3062 0.2226 -5.5289 40 1 6.6040 1.8315 -5.1529 41 1 5.2853 0.1512 -6.8412 42 1 4.3601 1.0885 -5.6253 43 1 3.0069 -1.9284 -4.2419 44 1 2.9198 -0.1514 -4.2983 45 1 0.8118 -1.1235 -7.1033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042162787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:53 Heat of formation + Delta-G solvation = -109.928788 kcal Electronic energy + Delta-G solvation = -28123.821586 eV Core-core repulsion = 24140.827122 eV Total energy + Delta-G solvation = -3982.994464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69652 -40.79722 -39.47088 -37.90040 -37.02338 -36.56770 -34.85158 -33.38498 -32.64331 -32.06624 -29.58219 -27.64432 -27.30954 -25.25221 -24.33943 -23.08518 -22.20354 -20.77207 -19.59075 -19.10655 -18.73524 -18.31304 -18.21374 -17.39532 -17.03925 -16.82354 -16.52277 -16.32742 -16.05145 -15.86093 -15.54675 -14.96189 -14.76475 -14.44721 -14.28704 -14.07886 -13.85741 -13.60522 -13.53365 -13.44671 -13.36392 -13.07729 -12.90974 -12.69180 -12.63045 -12.51440 -12.49008 -12.26703 -12.13085 -11.91169 -11.81404 -11.75621 -11.61696 -11.56147 -11.50819 -10.55658 -10.39475 -9.41049 -9.15911 -8.14553 -6.25973 1.27057 1.40531 1.43924 1.53706 1.74782 1.89205 1.98782 2.12418 2.30601 2.46758 3.02700 3.16853 3.22937 3.53989 3.70716 3.79092 3.97587 4.08022 4.15919 4.19711 4.24486 4.29778 4.39317 4.48967 4.59362 4.61368 4.63843 4.75287 4.89552 5.01502 5.06147 5.10602 5.14108 5.17380 5.28999 5.39644 5.39992 5.66906 5.68327 5.91791 6.02307 6.08583 6.18307 6.65893 6.82675 6.90078 7.05638 7.40219 7.64941 8.91985 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.003730 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.561583 B = 7505.308660 C = 8598.057039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.245 3.755 3 C -0.039 4.039 4 C 0.112 3.888 5 N -0.600 5.600 6 C 0.262 3.738 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.955 3.045 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.500 3.500 16 O -0.571 6.571 17 C 0.029 3.971 18 N -0.526 5.526 19 C 0.048 3.952 20 C -0.125 4.125 21 C -0.127 4.127 22 C 0.089 3.911 23 H 0.081 0.919 24 C -0.138 4.138 25 C 0.488 3.512 26 O -0.544 6.544 27 O -0.515 6.515 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.003 0.997 34 H 0.264 0.736 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 7.912 -17.361 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.072 4.072 3 C -0.080 4.080 4 C -0.013 4.013 5 N -0.331 5.331 6 C 0.140 3.860 7 C -0.574 4.574 8 H 0.071 0.929 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.780 3.220 12 H -0.193 1.193 13 H -0.213 1.213 14 H -0.199 1.199 15 C 0.289 3.711 16 O -0.449 6.449 17 C -0.101 4.101 18 N -0.251 5.251 19 C -0.079 4.079 20 C -0.163 4.163 21 C -0.165 4.165 22 C -0.019 4.019 23 H 0.099 0.901 24 C -0.176 4.176 25 C 0.332 3.668 26 O -0.435 6.435 27 O -0.329 6.329 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.021 0.979 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.896 7.495 -17.036 21.567 hybrid contribution 0.317 -0.521 0.140 0.626 sum -10.579 6.975 -16.896 21.119 Atomic orbital electron populations 1.81269 1.14409 1.10009 1.10944 1.29132 0.94905 0.91749 0.91400 1.19848 0.80089 1.00115 1.07914 1.21535 0.79127 0.95253 1.05354 1.48074 1.06657 1.70819 1.07596 1.18751 0.91451 0.94935 0.80821 1.21804 1.35844 0.93792 1.06007 0.92875 1.25685 0.95401 1.01662 0.96009 1.70024 1.39324 1.34994 1.12332 0.85560 0.77606 0.80583 0.78206 1.19256 1.21317 1.19946 1.21148 0.87948 0.76240 0.85798 1.90671 1.16426 1.51047 1.86803 1.22544 0.94448 1.05076 0.88060 1.63402 1.24205 1.36845 1.00641 1.23023 0.98621 0.88869 0.97390 1.22699 0.97774 1.01898 0.93909 1.22807 0.97524 0.95910 1.00266 1.22257 0.90042 0.99766 0.89822 0.90091 1.22233 0.94450 1.08131 0.92811 1.23463 0.80616 0.70790 0.91969 1.90732 1.67260 1.46831 1.38635 1.84516 1.21958 1.84706 1.41713 0.86376 0.84503 0.87308 0.89938 0.94867 0.97921 0.92701 0.85606 0.87960 0.92597 0.92257 0.91554 0.89054 0.90646 0.90176 0.85145 0.85037 0.71181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.40 18.54 20.01 0.37 -12.03 16 2 C 0.25 4.70 15.43 89.44 1.38 6.08 16 3 C -0.04 -0.59 6.02 28.79 0.17 -0.42 16 4 C 0.11 2.43 5.17 86.38 0.45 2.87 16 5 N -0.60 -20.14 2.46 -826.17 -2.03 -22.17 16 6 C 0.26 12.28 5.16 85.63 0.44 12.72 16 7 C -0.54 -28.52 9.39 25.60 0.24 -28.28 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.01 0.62 5.46 84.65 0.46 1.08 16 10 N -0.93 -53.40 13.29 21.45 0.28 -53.12 16 11 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 C 0.50 17.00 7.45 87.66 0.65 17.66 16 16 O -0.57 -26.23 14.44 -3.03 -0.04 -26.27 16 17 C 0.03 0.61 2.72 85.56 0.23 0.84 16 18 N -0.53 -12.66 4.91 -865.07 -4.24 -16.90 16 19 C 0.05 1.16 5.65 86.77 0.49 1.65 16 20 C -0.12 -2.32 7.08 31.98 0.23 -2.10 16 21 C -0.13 -2.12 5.43 31.78 0.17 -1.95 16 22 C 0.09 1.65 3.09 45.26 0.14 1.79 16 23 H 0.08 1.81 7.94 -2.39 -0.02 1.80 16 24 C -0.14 -1.71 3.96 29.85 0.12 -1.59 16 25 C 0.49 7.24 8.02 71.23 0.57 7.81 16 26 O -0.54 -11.63 15.65 21.97 0.34 -11.28 16 27 O -0.52 -5.44 13.42 -51.45 -0.69 -6.13 16 28 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.14 1.29 7.22 -2.38 -0.02 1.27 16 30 H 0.11 1.61 6.44 -2.39 -0.02 1.60 16 31 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 32 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 33 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.13 2.07 5.40 -2.39 -0.01 2.06 16 36 H 0.10 1.29 5.89 -2.38 -0.01 1.28 16 37 H 0.06 1.16 7.66 -2.38 -0.02 1.14 16 38 H 0.06 1.89 7.26 -2.39 -0.02 1.87 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.40 7.72 -2.39 -0.02 1.38 16 42 H 0.08 1.07 7.81 -2.39 -0.02 1.05 16 43 H 0.13 1.30 6.23 -2.38 -0.01 1.29 16 44 H 0.13 1.01 7.02 -2.39 -0.02 0.99 16 45 H 0.43 1.31 9.10 -74.06 -0.67 0.64 16 Total: -1.00 -80.12 373.39 2.12 -77.99 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 0.36 Total: 6.12 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 5.75 Total: 18.16 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -5.62 Total: -104.22 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.39 Total: -43.69 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -80.12 2.12 -77.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042162787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.935 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds