Wall clock time and date at job start Tue Mar 31 2020 13:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47303 * 2 1 4 4 C 1.46496 * 119.99997 * 277.58058 * 3 2 1 5 5 C 1.50703 * 109.47088 * 269.99395 * 4 3 2 6 6 H 1.07997 * 120.00019 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99980 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99912 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47190 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47075 * 120.00024 * 9 7 5 12 12 H 1.48496 * 109.47153 * 240.00075 * 9 7 5 13 13 C 1.34776 * 119.99645 * 97.57603 * 3 2 1 14 14 O 1.21592 * 119.99565 * 185.80156 * 13 3 2 15 15 C 1.47604 * 120.00424 * 5.80361 * 13 3 2 16 16 C 1.39704 * 120.05709 * 313.74401 * 15 13 3 17 17 C 1.38225 * 119.94676 * 180.31750 * 16 15 13 18 18 O 1.36001 * 119.97502 * 179.97438 * 17 16 15 19 19 C 1.42900 * 116.99924 * 359.95860 * 18 17 16 20 20 C 1.39228 * 120.05501 * 359.93381 * 17 16 15 21 21 O 1.35897 * 119.94407 * 180.02562 * 20 17 16 22 22 C 1.42896 * 117.00121 * 270.01910 * 21 20 17 23 23 C 1.39229 * 120.11424 * 0.04232 * 20 17 16 24 24 O 1.36007 * 119.97406 * 179.97438 * 23 20 17 25 25 C 1.42895 * 116.99894 * 180.02562 * 24 23 20 26 26 C 1.38236 * 120.05453 * 359.97438 * 23 20 17 27 27 H 1.09001 * 109.47309 * 69.40949 * 1 2 3 28 28 H 1.08997 * 109.47331 * 189.40935 * 1 2 3 29 29 H 1.08998 * 109.46945 * 309.40831 * 1 2 3 30 30 H 1.09001 * 109.46996 * 240.00290 * 2 1 3 31 31 H 1.08995 * 109.47391 * 120.00589 * 2 1 3 32 32 H 1.08997 * 109.47843 * 29.99696 * 4 3 2 33 33 H 1.09001 * 109.47465 * 150.00167 * 4 3 2 34 34 H 0.97001 * 120.00177 * 179.97438 * 8 7 5 35 35 H 1.08002 * 120.02737 * 0.24566 * 16 15 13 36 36 H 1.08999 * 109.47396 * 59.99917 * 19 18 17 37 37 H 1.09003 * 109.47635 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.47428 * 300.00118 * 19 18 17 39 39 H 1.09011 * 109.46880 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.47234 * 299.99858 * 22 21 20 41 41 H 1.08998 * 109.47123 * 60.00460 * 22 21 20 42 42 H 1.08999 * 109.47246 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.47803 * 299.99943 * 25 24 23 44 44 H 1.09007 * 109.47254 * 60.00303 * 25 24 23 45 45 H 1.08004 * 120.02444 * 180.02562 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1047 2.1276 -1.2576 5 6 3.4623 1.9141 -1.8762 6 1 4.1879 1.2850 -1.3822 7 6 3.7779 2.5219 -3.0729 8 7 2.8941 3.2876 -3.6747 9 14 5.4603 2.2567 -3.8399 10 1 6.2643 1.3595 -2.9717 11 1 5.3012 1.6373 -5.1802 12 1 6.1532 3.5630 -3.9774 13 6 2.3880 1.9652 1.1570 14 8 2.6927 3.1422 1.1737 15 6 2.4232 1.1760 2.4039 16 6 1.3543 0.3385 2.7323 17 6 1.3867 -0.3945 3.9037 18 8 0.3462 -1.2095 4.2243 19 6 -0.7468 -1.2582 3.3050 20 6 2.4840 -0.2998 4.7554 21 8 2.5137 -1.0219 5.9063 22 6 1.9653 -0.4057 7.0731 23 6 3.5508 0.5336 4.4303 24 8 4.6211 0.6244 5.2646 25 6 5.6796 1.4989 4.8691 26 6 3.5231 1.2691 3.2601 27 1 -0.3634 0.3614 -0.9620 28 1 -0.3634 -1.0138 0.1680 29 1 -0.3633 0.6524 0.7940 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3338 1.7755 -1.9429 33 1 1.9583 3.1896 -1.0607 34 1 3.1163 3.7155 -4.5164 35 1 0.5028 0.2648 2.0720 36 1 -0.3907 -1.6055 2.3352 37 1 -1.5065 -1.9443 3.6797 38 1 -1.1769 -0.2623 3.1987 39 1 2.0516 -1.0880 7.9190 40 1 2.5109 0.5127 7.2895 41 1 0.9146 -0.1723 6.9010 42 1 6.4683 1.4781 5.6212 43 1 6.0825 1.1717 3.9106 44 1 5.2955 2.5146 4.7741 45 1 4.3511 1.9151 3.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:35 Heat of formation + Delta-G solvation = -102.479972 kcal Electronic energy + Delta-G solvation = -28636.301304 eV Core-core repulsion = 24621.337094 eV Total energy + Delta-G solvation = -4014.964210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01524 -39.22026 -39.07013 -37.79251 -35.96240 -35.49807 -32.88177 -30.74124 -30.29251 -29.65516 -27.86466 -27.60352 -27.21367 -26.29121 -23.69792 -23.12745 -22.20644 -21.91510 -19.56296 -18.10271 -17.50834 -17.26801 -16.71908 -16.51031 -16.34350 -16.02444 -15.62162 -15.48443 -15.09471 -14.94133 -14.64081 -14.47370 -14.23522 -13.68205 -13.46140 -13.10580 -12.89262 -12.64758 -12.36274 -12.15797 -12.01245 -11.91397 -11.82995 -11.62600 -11.55834 -11.28920 -11.19943 -10.94170 -10.88534 -10.69873 -10.45688 -10.18773 -10.01030 -9.67928 -9.15707 -8.48757 -8.29842 -8.21888 -7.76315 -6.09466 -4.14512 0.86695 1.29722 2.69705 3.05885 3.26627 3.34286 3.37797 3.47693 3.61295 3.73812 3.97640 4.40096 4.67197 4.86074 4.92562 5.00276 5.02400 5.04774 5.13669 5.19425 5.24924 5.25339 5.28719 5.32440 5.33375 5.35159 5.45485 5.51996 5.58112 5.63660 5.80233 5.92930 6.07829 6.16786 6.22552 6.30460 6.43004 6.91190 6.99630 7.13193 7.37460 7.45312 7.60872 7.86811 8.17030 8.28207 8.79908 8.96020 9.50839 10.98663 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.003975 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.622514 B = 7043.008060 C = 8385.893839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.093 3.907 3 N -0.585 5.585 4 C 0.245 3.755 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.547 3.453 14 O -0.532 6.532 15 C -0.036 4.036 16 C -0.219 4.219 17 C 0.142 3.858 18 O -0.302 6.302 19 C 0.020 3.980 20 C 0.037 3.963 21 O -0.312 6.312 22 C 0.035 3.965 23 C 0.143 3.857 24 O -0.304 6.304 25 C 0.022 3.978 26 C -0.184 4.184 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.155 0.845 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -9.271 17.261 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.031 4.031 3 N -0.315 5.315 4 C 0.126 3.874 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.333 3.667 14 O -0.410 6.410 15 C -0.040 4.040 16 C -0.238 4.238 17 C 0.095 3.905 18 O -0.215 6.215 19 C -0.075 4.075 20 C -0.009 4.009 21 O -0.228 6.228 22 C -0.059 4.059 23 C 0.097 3.903 24 O -0.216 6.216 25 C -0.073 4.073 26 C -0.204 4.204 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.172 0.828 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.548 -8.929 17.440 20.114 hybrid contribution 0.794 0.365 -0.984 1.316 sum -3.754 -8.565 16.456 18.928 Atomic orbital electron populations 1.22386 0.96903 1.01215 1.02863 1.21705 0.93541 0.84388 1.03466 1.48187 1.61538 1.13380 1.08410 1.19346 0.97206 0.92833 0.78012 1.21470 0.99479 1.29981 1.05870 0.92317 1.24928 0.97376 0.94842 0.96861 1.69936 1.34465 1.31281 1.17523 0.86442 0.83964 0.78078 0.78956 1.19767 1.20897 1.20838 1.18059 0.78682 0.86944 0.83064 1.90780 1.48881 1.15507 1.85788 1.19837 0.93766 0.95049 0.95307 1.21799 1.02369 1.01317 0.98355 1.18773 0.87190 0.91296 0.93220 1.86130 1.27083 1.60707 1.47613 1.23220 0.87815 1.02633 0.93783 1.17041 0.92497 1.01004 0.90339 1.86100 1.81313 1.40465 1.14944 1.22971 0.97529 0.98592 0.86822 1.18784 0.87889 0.93668 0.89982 1.86118 1.26817 1.63181 1.45522 1.23177 0.88559 0.93398 1.02166 1.21112 1.01063 1.03835 0.94384 0.91312 0.91882 0.92613 0.89865 0.90535 0.94666 0.93559 0.92708 0.82803 0.92035 0.87962 0.92455 0.89153 0.93737 0.93764 0.87991 0.92073 0.92137 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.05 37.16 0.34 -1.91 16 2 C 0.09 1.51 5.59 -4.04 -0.02 1.48 16 3 N -0.58 -12.35 2.46 -176.27 -0.43 -12.78 16 4 C 0.24 6.28 5.22 -5.19 -0.03 6.26 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.55 11.75 7.25 -12.44 -0.09 11.66 16 14 O -0.53 -13.53 16.55 5.28 0.09 -13.44 16 15 C -0.04 -0.63 5.06 -104.98 -0.53 -1.16 16 16 C -0.22 -3.22 6.41 -39.04 -0.25 -3.47 16 17 C 0.14 2.02 6.69 -39.22 -0.26 1.76 16 18 O -0.30 -3.80 10.27 -34.49 -0.35 -4.16 16 19 C 0.02 0.18 9.81 101.05 0.99 1.17 16 20 C 0.04 0.56 5.75 -38.85 -0.22 0.33 16 21 O -0.31 -4.55 9.96 -44.81 -0.45 -5.00 16 22 C 0.04 0.38 11.13 101.05 1.12 1.51 16 23 C 0.14 2.17 6.69 -39.21 -0.26 1.91 16 24 O -0.30 -4.17 10.27 -34.50 -0.35 -4.53 16 25 C 0.02 0.23 9.81 101.05 0.99 1.22 16 26 C -0.18 -3.00 8.67 -39.04 -0.34 -3.34 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.60 7.58 -51.93 -0.39 0.20 16 29 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 30 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 31 H 0.08 1.13 5.12 -51.93 -0.27 0.87 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.15 2.01 1.95 -52.49 -0.10 1.91 16 36 H 0.06 0.49 6.98 -51.93 -0.36 0.13 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 44 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 45 H 0.14 2.29 6.28 -52.48 -0.33 1.96 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -34.45 371.35 -5.45 -39.90 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.28 Total: -0.71 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 1.02 Total: 3.95 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.30 Total: -38.17 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -1.07 Total: -27.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.45 -5.45 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.578 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds