Wall clock time and date at job start Tue Mar 31 2020 13:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47303 * 2 1 4 4 C 1.46496 * 119.99997 * 277.58058 * 3 2 1 5 5 C 1.50703 * 109.47088 * 269.99395 * 4 3 2 6 6 H 1.07997 * 120.00019 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99980 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99912 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47190 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47075 * 120.00024 * 9 7 5 12 12 H 1.48496 * 109.47153 * 240.00075 * 9 7 5 13 13 C 1.34776 * 119.99645 * 97.57603 * 3 2 1 14 14 O 1.21592 * 119.99565 * 185.80156 * 13 3 2 15 15 C 1.47604 * 120.00424 * 5.80361 * 13 3 2 16 16 C 1.39704 * 120.05709 * 313.74401 * 15 13 3 17 17 C 1.38225 * 119.94676 * 180.31750 * 16 15 13 18 18 O 1.36001 * 119.97502 * 179.97438 * 17 16 15 19 19 C 1.42900 * 116.99924 * 359.95860 * 18 17 16 20 20 C 1.39228 * 120.05501 * 359.93381 * 17 16 15 21 21 O 1.35897 * 119.94407 * 180.02562 * 20 17 16 22 22 C 1.42896 * 117.00121 * 270.01910 * 21 20 17 23 23 C 1.39229 * 120.11424 * 0.04232 * 20 17 16 24 24 O 1.36007 * 119.97406 * 179.97438 * 23 20 17 25 25 C 1.42895 * 116.99894 * 180.02562 * 24 23 20 26 26 C 1.38236 * 120.05453 * 359.97438 * 23 20 17 27 27 H 1.09001 * 109.47309 * 69.40949 * 1 2 3 28 28 H 1.08997 * 109.47331 * 189.40935 * 1 2 3 29 29 H 1.08998 * 109.46945 * 309.40831 * 1 2 3 30 30 H 1.09001 * 109.46996 * 240.00290 * 2 1 3 31 31 H 1.08995 * 109.47391 * 120.00589 * 2 1 3 32 32 H 1.08997 * 109.47843 * 29.99696 * 4 3 2 33 33 H 1.09001 * 109.47465 * 150.00167 * 4 3 2 34 34 H 0.97001 * 120.00177 * 179.97438 * 8 7 5 35 35 H 1.08002 * 120.02737 * 0.24566 * 16 15 13 36 36 H 1.08999 * 109.47396 * 59.99917 * 19 18 17 37 37 H 1.09003 * 109.47635 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.47428 * 300.00118 * 19 18 17 39 39 H 1.09011 * 109.46880 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.47234 * 299.99858 * 22 21 20 41 41 H 1.08998 * 109.47123 * 60.00460 * 22 21 20 42 42 H 1.08999 * 109.47246 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.47803 * 299.99943 * 25 24 23 44 44 H 1.09007 * 109.47254 * 60.00303 * 25 24 23 45 45 H 1.08004 * 120.02444 * 180.02562 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1047 2.1276 -1.2576 5 6 3.4623 1.9141 -1.8762 6 1 4.1879 1.2850 -1.3822 7 6 3.7779 2.5219 -3.0729 8 7 2.8941 3.2876 -3.6747 9 14 5.4603 2.2567 -3.8399 10 1 6.2643 1.3595 -2.9717 11 1 5.3012 1.6373 -5.1802 12 1 6.1532 3.5630 -3.9774 13 6 2.3880 1.9652 1.1570 14 8 2.6927 3.1422 1.1737 15 6 2.4232 1.1760 2.4039 16 6 1.3543 0.3385 2.7323 17 6 1.3867 -0.3945 3.9037 18 8 0.3462 -1.2095 4.2243 19 6 -0.7468 -1.2582 3.3050 20 6 2.4840 -0.2998 4.7554 21 8 2.5137 -1.0219 5.9063 22 6 1.9653 -0.4057 7.0731 23 6 3.5508 0.5336 4.4303 24 8 4.6211 0.6244 5.2646 25 6 5.6796 1.4989 4.8691 26 6 3.5231 1.2691 3.2601 27 1 -0.3634 0.3614 -0.9620 28 1 -0.3634 -1.0138 0.1680 29 1 -0.3633 0.6524 0.7940 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3338 1.7755 -1.9429 33 1 1.9583 3.1896 -1.0607 34 1 3.1163 3.7155 -4.5164 35 1 0.5028 0.2648 2.0720 36 1 -0.3907 -1.6055 2.3352 37 1 -1.5065 -1.9443 3.6797 38 1 -1.1769 -0.2623 3.1987 39 1 2.0516 -1.0880 7.9190 40 1 2.5109 0.5127 7.2895 41 1 0.9146 -0.1723 6.9010 42 1 6.4683 1.4781 5.6212 43 1 6.0825 1.1717 3.9106 44 1 5.2955 2.5146 4.7741 45 1 4.3511 1.9151 3.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:34 Heat of formation + Delta-G solvation = -125.157942 kcal Electronic energy + Delta-G solvation = -28637.284694 eV Core-core repulsion = 24621.337094 eV Total energy + Delta-G solvation = -4015.947600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19277 -40.71878 -40.09989 -38.82267 -37.21254 -37.13932 -34.93283 -32.17429 -31.55658 -30.76947 -29.34700 -28.74135 -28.05049 -27.48872 -25.38720 -24.53215 -23.57704 -23.05140 -20.91295 -19.39013 -18.79440 -18.60514 -18.37337 -17.78748 -17.51557 -17.26239 -17.09189 -16.52147 -16.38372 -16.08399 -15.99730 -15.87294 -15.54114 -14.96974 -14.75508 -14.39423 -14.11933 -14.04502 -13.67807 -13.51506 -13.32625 -13.15520 -13.10585 -12.80729 -12.71587 -12.60302 -12.50530 -12.44934 -12.28329 -12.14101 -12.02952 -11.73365 -11.65214 -11.02033 -10.86291 -10.66464 -9.60847 -9.39995 -9.34994 -8.25032 -6.39699 -0.37694 0.14499 1.35854 1.37765 1.49297 1.60007 1.73208 2.10969 2.34446 2.38811 2.60308 2.78326 3.05026 3.34259 3.75138 3.83603 3.90840 4.05253 4.17889 4.24209 4.30429 4.30999 4.37482 4.38172 4.48593 4.51407 4.52083 4.61738 4.67643 4.76964 4.80219 4.86114 4.90053 4.92835 5.01112 5.07140 5.10742 5.19804 5.35418 5.52441 5.77738 5.91252 6.02448 6.13376 6.55836 6.58229 6.69215 7.16060 7.33829 8.82532 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.003975 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.622514 B = 7043.008060 C = 8385.893839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.086 3.914 3 N -0.587 5.587 4 C 0.261 3.739 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.543 3.457 14 O -0.586 6.586 15 C -0.054 4.054 16 C -0.207 4.207 17 C 0.150 3.850 18 O -0.308 6.308 19 C 0.006 3.994 20 C 0.033 3.967 21 O -0.327 6.327 22 C 0.031 3.969 23 C 0.144 3.856 24 O -0.310 6.310 25 C 0.015 3.985 26 C -0.192 4.192 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.031 0.969 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.171 0.829 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.134 0.866 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -11.596 18.479 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.036 4.036 3 N -0.317 5.317 4 C 0.140 3.860 5 C -0.586 4.586 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.193 1.193 12 H -0.206 1.206 13 C 0.331 3.669 14 O -0.467 6.467 15 C -0.057 4.057 16 C -0.226 4.226 17 C 0.103 3.897 18 O -0.220 6.220 19 C -0.088 4.088 20 C -0.012 4.012 21 O -0.244 6.244 22 C -0.063 4.063 23 C 0.097 3.903 24 O -0.223 6.223 25 C -0.079 4.079 26 C -0.212 4.212 27 H 0.074 0.926 28 H 0.126 0.874 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.188 0.812 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.152 0.848 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.877 -11.304 18.672 22.365 hybrid contribution 0.828 1.039 -1.252 1.826 sum -4.049 -10.266 17.419 20.620 Atomic orbital electron populations 1.22351 0.93923 1.04038 1.02401 1.22035 0.95989 0.81509 1.04069 1.48184 1.61520 1.15022 1.06941 1.18819 0.96333 0.91011 0.79814 1.21717 1.00269 1.30196 1.06371 0.92948 1.25813 1.01338 0.94328 0.97304 1.70044 1.36471 1.31919 1.18016 0.85382 0.79011 0.78052 0.78463 1.19251 1.19330 1.20635 1.18668 0.77355 0.86630 0.84262 1.90732 1.51232 1.17959 1.86824 1.19466 0.95743 0.96553 0.93969 1.21813 1.01734 1.00334 0.98755 1.18712 0.87601 0.90991 0.92446 1.86150 1.27294 1.59823 1.48768 1.23620 0.87186 1.04012 0.93972 1.17268 0.92591 1.00435 0.90932 1.86056 1.81807 1.41000 1.15501 1.23193 0.97634 0.99323 0.86149 1.18771 0.88532 0.93440 0.89555 1.86115 1.26982 1.63813 1.45352 1.23437 0.88361 0.92838 1.03256 1.21063 1.00834 1.04378 0.94936 0.92608 0.87444 0.92171 0.90454 0.88704 0.95061 0.97956 0.92298 0.81225 0.90982 0.85055 0.91774 0.86563 0.93682 0.93219 0.84829 0.92319 0.92153 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 9.05 71.98 0.65 -3.35 16 2 C 0.09 2.72 5.59 86.38 0.48 3.21 16 3 N -0.59 -25.57 2.46 -829.85 -2.04 -27.61 16 4 C 0.26 14.04 5.22 85.63 0.45 14.49 16 5 C -0.55 -31.50 9.39 25.60 0.24 -31.26 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.66 5.46 84.66 0.46 1.13 16 8 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 9 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.54 24.26 7.25 86.72 0.63 24.89 16 14 O -0.59 -31.64 16.55 -4.01 -0.07 -31.71 16 15 C -0.05 -1.90 5.06 -20.10 -0.10 -2.00 16 16 C -0.21 -5.80 6.41 22.62 0.14 -5.66 16 17 C 0.15 3.97 6.69 22.50 0.15 4.12 16 18 O -0.31 -6.80 10.27 -79.47 -0.82 -7.62 16 19 C 0.01 0.08 9.81 113.37 1.11 1.19 16 20 C 0.03 0.96 5.75 22.75 0.13 1.09 16 21 O -0.33 -8.88 9.96 -68.11 -0.68 -9.56 16 22 C 0.03 0.60 11.13 113.37 1.26 1.86 16 23 C 0.14 4.28 6.69 22.51 0.15 4.43 16 24 O -0.31 -8.24 10.27 -79.54 -0.82 -9.05 16 25 C 0.02 0.30 9.81 113.37 1.11 1.41 16 26 C -0.19 -6.37 8.67 22.62 0.20 -6.18 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.11 1.60 7.58 -2.39 -0.02 1.58 16 29 H 0.06 1.38 6.30 -2.39 -0.02 1.37 16 30 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 31 H 0.09 2.67 5.12 -2.39 -0.01 2.66 16 32 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 33 H 0.00 0.14 7.35 -2.39 -0.02 0.13 16 34 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.17 4.06 1.95 -2.91 -0.01 4.05 16 36 H 0.07 0.84 6.98 -2.39 -0.02 0.82 16 37 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 0.80 7.66 -2.39 -0.02 0.79 16 39 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.13 1.76 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 44 H 0.06 1.20 7.66 -2.38 -0.02 1.19 16 45 H 0.14 4.59 6.28 -2.91 -0.02 4.57 16 Total: -1.00 -77.76 371.35 5.98 -71.78 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.01 Total: 12.78 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 7.07 Total: 9.38 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.76 Total: -82.64 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -2.38 Total: -57.94 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -77.76 5.98 -71.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.376 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds