Wall clock time and date at job start Tue Mar 31 2020 13:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46823 * 2 1 4 4 C 1.46499 * 120.00631 * 264.94563 * 3 2 1 5 5 C 1.50695 * 109.47025 * 90.00085 * 4 3 2 6 6 H 1.08002 * 120.00085 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99917 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99916 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47162 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47420 * 120.00164 * 9 7 5 12 12 H 1.48506 * 109.47124 * 239.99910 * 9 7 5 13 13 C 1.34780 * 119.99305 * 84.94619 * 3 2 1 14 14 O 1.21616 * 120.00756 * 4.57131 * 13 3 2 15 15 C 1.47294 * 119.99656 * 184.56915 * 13 3 2 16 16 C 1.39954 * 120.11803 * 301.28942 * 15 13 3 17 17 C 1.37903 * 119.90180 * 179.76419 * 16 15 13 18 18 O 1.36067 * 119.92413 * 180.25509 * 17 16 15 19 19 C 1.42894 * 117.00384 * 0.25893 * 18 17 16 20 20 C 1.39562 * 120.14493 * 0.51577 * 17 16 15 21 21 O 1.35799 * 119.87698 * 179.71494 * 20 17 16 22 22 C 1.42901 * 116.99636 * 180.02562 * 21 20 17 23 23 C 1.38573 * 120.24532 * 359.74097 * 20 17 16 24 24 C 1.38489 * 120.09113 * 0.02562 * 23 20 17 25 25 O 1.35725 * 120.07209 * 179.97438 * 24 23 20 26 26 C 1.42893 * 117.00077 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47861 * 59.99504 * 1 2 3 28 28 H 1.09006 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47464 * 299.99366 * 1 2 3 30 30 H 1.08995 * 109.47140 * 120.00064 * 2 1 3 31 31 H 1.09007 * 109.47016 * 240.00869 * 2 1 3 32 32 H 1.08997 * 109.47031 * 210.00346 * 4 3 2 33 33 H 1.09003 * 109.46791 * 330.00375 * 4 3 2 34 34 H 0.96992 * 119.99995 * 180.02562 * 8 7 5 35 35 H 1.07998 * 120.04727 * 0.03402 * 16 15 13 36 36 H 1.09008 * 109.47002 * 60.00113 * 19 18 17 37 37 H 1.09001 * 109.47306 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47419 * 300.00176 * 19 18 17 39 39 H 1.08998 * 109.47258 * 60.00820 * 22 21 20 40 40 H 1.09008 * 109.46988 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47494 * 300.00161 * 22 21 20 42 42 H 1.07998 * 119.95330 * 179.97438 * 23 20 17 43 43 H 1.09001 * 109.47250 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47284 * 299.99821 * 26 25 24 45 45 H 1.09002 * 109.47447 * 59.99928 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3678 2.0348 -1.2637 5 6 1.1533 2.7305 -1.8221 6 1 0.2150 2.6903 -1.2888 7 6 1.2400 3.4184 -3.0139 8 7 2.3824 3.4669 -3.6636 9 14 -0.2653 4.2815 -3.7058 10 1 -1.4173 4.0765 -2.7915 11 1 0.0127 5.7345 -3.8347 12 1 -0.5881 3.7189 -5.0418 13 6 2.1458 2.0508 1.1628 14 8 1.9356 1.4832 2.2176 15 6 2.5400 3.4700 1.1559 16 6 3.7520 3.8595 0.5745 17 6 4.1143 5.1900 0.5662 18 8 5.2901 5.5698 -0.0036 19 6 6.0954 4.5388 -0.5784 20 6 3.2802 6.1471 1.1458 21 8 3.6451 7.4552 1.1398 22 6 2.7454 8.3824 1.7505 23 6 2.0813 5.7676 1.7280 24 6 1.7053 4.4348 1.7376 25 8 0.5312 4.0634 2.3083 26 6 -0.2685 5.1002 2.8804 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 3.1570 2.7659 -1.0885 33 1 2.7171 1.2865 -1.9752 34 1 2.4435 3.9512 -4.5018 35 1 4.4004 3.1196 0.1290 36 1 5.5353 4.0382 -1.3684 37 1 7.0015 4.9765 -0.9973 38 1 6.3633 3.8152 0.1915 39 1 2.6111 8.1208 2.8000 40 1 3.1560 9.3895 1.6764 41 1 1.7829 8.3445 1.2405 42 1 1.4396 6.5121 2.1755 43 1 -1.1764 4.6682 3.3016 44 1 0.2945 5.6007 3.6681 45 1 -0.5338 5.8224 2.1083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:38 Heat of formation + Delta-G solvation = -107.317588 kcal Electronic energy + Delta-G solvation = -29482.028193 eV Core-core repulsion = 25466.854208 eV Total energy + Delta-G solvation = -4015.173985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63050 -39.04034 -38.52077 -38.06972 -35.39333 -35.07608 -32.65016 -31.08920 -29.57023 -29.40626 -27.95916 -27.04467 -27.01390 -26.10834 -23.64857 -22.81218 -21.84873 -21.54247 -19.26828 -18.27090 -17.15853 -17.10562 -16.55553 -16.14449 -15.94191 -15.69639 -15.31312 -15.13787 -14.95263 -14.57797 -14.49874 -14.25240 -13.95087 -13.68531 -13.02636 -12.76954 -12.51898 -12.40205 -12.26789 -12.06372 -11.86237 -11.48720 -11.43386 -11.34456 -11.30641 -11.27371 -11.08416 -10.94031 -10.90663 -10.74652 -10.42204 -10.01087 -9.79022 -9.56925 -9.05476 -8.54058 -8.27086 -7.64068 -7.14835 -6.12125 -4.15444 1.43853 1.79852 3.23873 3.32057 3.34987 3.37631 3.41900 3.52239 3.69687 3.85423 4.27683 4.38858 4.92999 5.07874 5.13867 5.18338 5.21369 5.24899 5.29300 5.39902 5.45084 5.49352 5.54916 5.58832 5.61171 5.72292 5.75485 5.91157 5.97935 6.06628 6.12805 6.26321 6.33034 6.54464 6.60550 6.77005 6.81400 6.95415 7.20791 7.23768 7.57752 7.63258 7.83820 7.90050 8.14489 8.38300 8.87429 9.07784 9.50268 10.95257 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.006388 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.248824 B = 4382.300518 C = 5017.772995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 N -0.591 5.591 4 C 0.227 3.773 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.572 3.428 14 O -0.560 6.560 15 C -0.126 4.126 16 C -0.088 4.088 17 C 0.065 3.935 18 O -0.308 6.308 19 C 0.024 3.976 20 C 0.149 3.851 21 O -0.302 6.302 22 C 0.026 3.974 23 C -0.270 4.270 24 C 0.177 3.823 25 O -0.296 6.296 26 C 0.027 3.973 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.146 0.854 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.140 0.860 43 H 0.098 0.902 44 H 0.051 0.949 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 5.100 8.787 10.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.002 4.002 3 N -0.322 5.322 4 C 0.108 3.892 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.360 3.640 14 O -0.441 6.441 15 C -0.130 4.130 16 C -0.107 4.107 17 C 0.020 3.980 18 O -0.223 6.223 19 C -0.071 4.071 20 C 0.103 3.897 21 O -0.215 6.215 22 C -0.069 4.069 23 C -0.290 4.290 24 C 0.130 3.870 25 O -0.209 6.209 26 C -0.068 4.068 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.158 0.842 43 H 0.116 0.884 44 H 0.070 0.930 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.797 4.944 9.058 10.474 hybrid contribution -1.219 0.739 -0.685 1.581 sum 0.578 5.682 8.373 10.135 Atomic orbital electron populations 1.22107 0.96457 1.00658 1.02952 1.21206 0.94461 0.83106 1.01391 1.48193 1.62865 1.13101 1.08016 1.19703 0.97037 0.93337 0.79141 1.21493 0.96582 1.32150 1.05972 0.92074 1.24875 0.95994 0.96156 0.96656 1.69897 1.24348 1.42429 1.16382 0.86568 0.83288 0.79498 0.78941 1.19732 1.20929 1.20914 1.17761 0.77079 0.85447 0.83688 1.90687 1.52805 1.69227 1.31361 1.18714 0.95602 0.93573 1.05142 1.20862 0.96802 0.94116 0.98899 1.17769 0.88398 0.90703 1.01086 1.86100 1.29074 1.35363 1.71719 1.23073 0.94731 0.91393 0.97915 1.17955 0.92125 0.82827 0.96830 1.86129 1.46201 1.13859 1.75307 1.23047 0.94198 0.92461 0.97233 1.20843 0.99412 0.96026 1.12711 1.18314 0.85500 0.90883 0.92339 1.86179 1.29239 1.35073 1.70380 1.23030 0.94879 0.91480 0.97410 0.91347 0.93071 0.92877 0.91545 0.90990 0.93636 0.94707 0.92773 0.83621 0.91580 0.88622 0.93243 0.92899 0.88353 0.92719 0.84199 0.88400 0.93017 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.20 37.16 0.38 -2.63 16 2 C 0.12 2.33 6.16 -4.04 -0.02 2.30 16 3 N -0.59 -13.05 2.47 -176.38 -0.43 -13.49 16 4 C 0.23 5.46 4.95 -5.20 -0.03 5.44 16 5 C -0.52 -13.85 9.18 -34.44 -0.32 -14.16 16 6 H 0.06 1.68 7.41 -52.49 -0.39 1.29 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.57 13.06 6.69 -12.58 -0.08 12.97 16 14 O -0.56 -13.66 16.56 5.15 0.09 -13.57 16 15 C -0.13 -2.72 5.01 -104.83 -0.53 -3.24 16 16 C -0.09 -1.74 6.64 -39.06 -0.26 -2.00 16 17 C 0.07 1.27 6.69 -39.21 -0.26 1.00 16 18 O -0.31 -5.62 10.27 -34.64 -0.36 -5.98 16 19 C 0.02 0.35 9.81 101.05 0.99 1.34 16 20 C 0.15 2.71 6.70 -38.96 -0.26 2.45 16 21 O -0.30 -4.95 10.26 -33.80 -0.35 -5.30 16 22 C 0.03 0.29 9.81 101.05 0.99 1.28 16 23 C -0.27 -4.63 8.01 -39.37 -0.32 -4.95 16 24 C 0.18 3.52 6.69 -38.75 -0.26 3.26 16 25 O -0.30 -5.69 9.80 -18.99 -0.19 -5.88 16 26 C 0.03 0.36 9.81 101.05 0.99 1.35 16 27 H 0.07 1.37 7.54 -51.93 -0.39 0.98 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.23 7.52 -51.93 -0.39 0.84 16 31 H 0.07 1.26 7.84 -51.93 -0.41 0.86 16 32 H 0.05 1.11 4.23 -51.93 -0.22 0.89 16 33 H 0.03 0.86 7.86 -51.93 -0.41 0.46 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.15 2.70 5.32 -52.49 -0.28 2.42 16 36 H 0.07 1.05 7.67 -51.92 -0.40 0.65 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.63 7.64 -51.93 -0.40 0.23 16 39 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 40 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 42 H 0.14 1.89 4.49 -52.49 -0.24 1.65 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 45 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -33.29 372.48 -5.34 -38.64 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.35 Total: 1.62 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 0.92 Total: 6.07 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.30 Total: -37.31 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.80 Total: -30.73 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.29 -5.34 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.681 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds