Wall clock time and date at job start Tue Mar 31 2020 13:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46823 * 2 1 4 4 C 1.46499 * 120.00631 * 264.94563 * 3 2 1 5 5 C 1.50695 * 109.47025 * 90.00085 * 4 3 2 6 6 H 1.08002 * 120.00085 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99917 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99916 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47162 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47420 * 120.00164 * 9 7 5 12 12 H 1.48506 * 109.47124 * 239.99910 * 9 7 5 13 13 C 1.34780 * 119.99305 * 84.94619 * 3 2 1 14 14 O 1.21616 * 120.00756 * 4.57131 * 13 3 2 15 15 C 1.47294 * 119.99656 * 184.56915 * 13 3 2 16 16 C 1.39954 * 120.11803 * 301.28942 * 15 13 3 17 17 C 1.37903 * 119.90180 * 179.76419 * 16 15 13 18 18 O 1.36067 * 119.92413 * 180.25509 * 17 16 15 19 19 C 1.42894 * 117.00384 * 0.25893 * 18 17 16 20 20 C 1.39562 * 120.14493 * 0.51577 * 17 16 15 21 21 O 1.35799 * 119.87698 * 179.71494 * 20 17 16 22 22 C 1.42901 * 116.99636 * 180.02562 * 21 20 17 23 23 C 1.38573 * 120.24532 * 359.74097 * 20 17 16 24 24 C 1.38489 * 120.09113 * 0.02562 * 23 20 17 25 25 O 1.35725 * 120.07209 * 179.97438 * 24 23 20 26 26 C 1.42893 * 117.00077 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47861 * 59.99504 * 1 2 3 28 28 H 1.09006 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47464 * 299.99366 * 1 2 3 30 30 H 1.08995 * 109.47140 * 120.00064 * 2 1 3 31 31 H 1.09007 * 109.47016 * 240.00869 * 2 1 3 32 32 H 1.08997 * 109.47031 * 210.00346 * 4 3 2 33 33 H 1.09003 * 109.46791 * 330.00375 * 4 3 2 34 34 H 0.96992 * 119.99995 * 180.02562 * 8 7 5 35 35 H 1.07998 * 120.04727 * 0.03402 * 16 15 13 36 36 H 1.09008 * 109.47002 * 60.00113 * 19 18 17 37 37 H 1.09001 * 109.47306 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47419 * 300.00176 * 19 18 17 39 39 H 1.08998 * 109.47258 * 60.00820 * 22 21 20 40 40 H 1.09008 * 109.46988 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47494 * 300.00161 * 22 21 20 42 42 H 1.07998 * 119.95330 * 179.97438 * 23 20 17 43 43 H 1.09001 * 109.47250 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47284 * 299.99821 * 26 25 24 45 45 H 1.09002 * 109.47447 * 59.99928 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3678 2.0348 -1.2637 5 6 1.1533 2.7305 -1.8221 6 1 0.2150 2.6903 -1.2888 7 6 1.2400 3.4184 -3.0139 8 7 2.3824 3.4669 -3.6636 9 14 -0.2653 4.2815 -3.7058 10 1 -1.4173 4.0765 -2.7915 11 1 0.0127 5.7345 -3.8347 12 1 -0.5881 3.7189 -5.0418 13 6 2.1458 2.0508 1.1628 14 8 1.9356 1.4832 2.2176 15 6 2.5400 3.4700 1.1559 16 6 3.7520 3.8595 0.5745 17 6 4.1143 5.1900 0.5662 18 8 5.2901 5.5698 -0.0036 19 6 6.0954 4.5388 -0.5784 20 6 3.2802 6.1471 1.1458 21 8 3.6451 7.4552 1.1398 22 6 2.7454 8.3824 1.7505 23 6 2.0813 5.7676 1.7280 24 6 1.7053 4.4348 1.7376 25 8 0.5312 4.0634 2.3083 26 6 -0.2685 5.1002 2.8804 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 3.1570 2.7659 -1.0885 33 1 2.7171 1.2865 -1.9752 34 1 2.4435 3.9512 -4.5018 35 1 4.4004 3.1196 0.1290 36 1 5.5353 4.0382 -1.3684 37 1 7.0015 4.9765 -0.9973 38 1 6.3633 3.8152 0.1915 39 1 2.6111 8.1208 2.8000 40 1 3.1560 9.3895 1.6764 41 1 1.7829 8.3445 1.2405 42 1 1.4396 6.5121 2.1755 43 1 -1.1764 4.6682 3.3016 44 1 0.2945 5.6007 3.6681 45 1 -0.5338 5.8224 2.1083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:37 Heat of formation + Delta-G solvation = -128.775515 kcal Electronic energy + Delta-G solvation = -29482.958678 eV Core-core repulsion = 25466.854208 eV Total energy + Delta-G solvation = -4016.104470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.03634 -40.57802 -39.92444 -39.37104 -36.88962 -36.76539 -34.63356 -32.62574 -31.01394 -30.79562 -29.12325 -28.91556 -28.07848 -27.35780 -25.21838 -24.67368 -23.31000 -22.90884 -20.78372 -19.63930 -18.72220 -18.62784 -18.30286 -17.68363 -17.37746 -17.06832 -16.74200 -16.48981 -16.35448 -16.13419 -15.74115 -15.68626 -15.54607 -15.13668 -14.55788 -14.28382 -14.12278 -13.88310 -13.59058 -13.51831 -13.41593 -13.10402 -13.01748 -12.77930 -12.63530 -12.55597 -12.47794 -12.45108 -12.31185 -12.16400 -12.07467 -11.73202 -11.58954 -11.14091 -10.81767 -10.50946 -9.74120 -9.42683 -8.56837 -8.16600 -6.26010 -0.01099 0.35885 1.35528 1.38687 1.48437 1.71692 2.17532 2.27609 2.29463 2.42198 2.45128 2.71724 3.14556 3.60021 3.69248 3.92024 4.11443 4.19324 4.26923 4.35403 4.35767 4.38331 4.39649 4.40835 4.44377 4.44734 4.56864 4.62454 4.69956 4.71566 4.76246 4.79815 4.85776 4.98799 5.08407 5.11553 5.22788 5.36672 5.39582 5.70856 5.88851 6.03046 6.12739 6.28989 6.53927 6.59673 6.84398 7.29757 7.44234 8.89328 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.006388 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.248824 B = 4382.300518 C = 5017.772995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.113 3.887 3 N -0.594 5.594 4 C 0.240 3.760 5 C -0.528 4.528 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.914 5.914 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.571 3.429 14 O -0.584 6.584 15 C -0.166 4.166 16 C -0.093 4.093 17 C 0.048 3.952 18 O -0.320 6.320 19 C 0.020 3.980 20 C 0.150 3.850 21 O -0.317 6.317 22 C 0.012 3.988 23 C -0.262 4.262 24 C 0.167 3.833 25 O -0.327 6.327 26 C 0.014 3.986 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.146 0.854 36 H 0.045 0.955 37 H 0.127 0.873 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.062 0.938 42 H 0.178 0.822 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 6.625 9.224 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 N -0.324 5.324 4 C 0.120 3.880 5 C -0.567 4.567 6 H 0.064 0.936 7 C -0.175 4.175 8 N -0.554 5.554 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.201 1.201 13 C 0.360 3.640 14 O -0.467 6.467 15 C -0.170 4.170 16 C -0.112 4.112 17 C 0.003 3.997 18 O -0.235 6.235 19 C -0.074 4.074 20 C 0.103 3.897 21 O -0.230 6.230 22 C -0.082 4.082 23 C -0.281 4.281 24 C 0.120 3.880 25 O -0.241 6.241 26 C -0.080 4.080 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.164 0.836 36 H 0.064 0.936 37 H 0.145 0.855 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.195 0.805 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.080 6.471 9.496 11.542 hybrid contribution -0.999 0.343 -0.761 1.301 sum 0.081 6.814 8.735 11.079 Atomic orbital electron populations 1.21998 0.95751 1.02411 1.00887 1.21452 0.95055 0.81954 1.02485 1.48224 1.62803 1.14076 1.07247 1.19421 0.96186 0.92844 0.79557 1.21565 0.96571 1.32475 1.06043 0.93632 1.25490 0.98279 0.96781 0.96966 1.69974 1.25659 1.43049 1.16702 0.85738 0.80424 0.78535 0.78450 1.19801 1.20659 1.20101 1.18037 0.76463 0.86136 0.83348 1.90642 1.54105 1.69973 1.31941 1.18842 0.97130 0.93256 1.07743 1.20843 0.96565 0.94697 0.99129 1.18016 0.89172 0.90874 1.01647 1.86077 1.28974 1.36703 1.71758 1.23280 0.94927 0.91475 0.97742 1.18152 0.91956 0.83744 0.95825 1.86122 1.47884 1.13329 1.75684 1.23481 0.94059 0.92515 0.98168 1.21124 0.99375 0.95659 1.11904 1.18520 0.85760 0.91588 0.92177 1.86137 1.29339 1.37983 1.70600 1.23431 0.95198 0.91030 0.98301 0.93304 0.89425 0.94799 0.90851 0.89408 0.93952 0.95732 0.92605 0.83619 0.93603 0.85526 0.91747 0.90858 0.85607 0.91951 0.80523 0.86498 0.90536 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 10.20 71.98 0.73 -4.84 16 2 C 0.11 4.33 6.16 86.38 0.53 4.86 16 3 N -0.59 -26.82 2.47 -830.20 -2.05 -28.87 16 4 C 0.24 11.84 4.95 85.63 0.42 12.26 16 5 C -0.53 -28.33 9.18 25.60 0.24 -28.10 16 6 H 0.05 2.55 7.41 -2.91 -0.02 2.53 16 7 C 0.02 1.34 5.46 84.66 0.46 1.80 16 8 N -0.91 -50.59 13.29 21.45 0.28 -50.30 16 9 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.57 26.77 6.69 86.62 0.58 27.35 16 14 O -0.58 -29.18 16.56 -3.97 -0.07 -29.25 16 15 C -0.17 -7.29 5.01 -20.00 -0.10 -7.39 16 16 C -0.09 -3.80 6.64 22.61 0.15 -3.65 16 17 C 0.05 1.87 6.69 22.51 0.15 2.02 16 18 O -0.32 -11.66 10.27 -80.26 -0.82 -12.49 16 19 C 0.02 0.58 9.81 113.37 1.11 1.70 16 20 C 0.15 5.32 6.70 22.67 0.15 5.47 16 21 O -0.32 -9.78 10.26 -77.25 -0.79 -10.57 16 22 C 0.01 0.22 9.81 113.37 1.11 1.33 16 23 C -0.26 -8.56 8.01 22.41 0.18 -8.39 16 24 C 0.17 6.62 6.69 22.81 0.15 6.78 16 25 O -0.33 -12.46 9.80 -90.36 -0.89 -13.34 16 26 C 0.01 0.34 9.81 113.37 1.11 1.45 16 27 H 0.05 1.96 7.54 -2.39 -0.02 1.94 16 28 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 2.71 7.52 -2.39 -0.02 2.70 16 31 H 0.09 3.05 7.84 -2.38 -0.02 3.03 16 32 H 0.04 2.14 4.23 -2.39 -0.01 2.13 16 33 H 0.02 1.25 7.86 -2.39 -0.02 1.23 16 34 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 35 H 0.15 5.67 5.32 -2.91 -0.02 5.66 16 36 H 0.05 1.50 7.67 -2.38 -0.02 1.48 16 37 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.06 1.64 7.64 -2.39 -0.02 1.62 16 39 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 40 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.06 1.09 7.65 -2.39 -0.02 1.07 16 42 H 0.18 4.20 4.49 -2.91 -0.01 4.19 16 43 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.08 1.43 7.66 -2.39 -0.02 1.41 16 45 H 0.06 1.39 7.66 -2.39 -0.02 1.37 16 Total: -1.00 -72.77 372.48 5.69 -67.08 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.01 Total: 19.95 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 6.99 Total: 12.66 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -1.76 Total: -79.17 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -2.57 Total: -65.65 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -72.77 5.69 -67.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.698 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds