Wall clock time and date at job start Tue Mar 31 2020 13:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47201 * 2 1 4 4 C 1.46509 * 120.00165 * 270.00366 * 3 2 1 5 5 C 1.50700 * 109.47115 * 270.00267 * 4 3 2 6 6 H 1.07999 * 120.00072 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00112 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00245 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99628 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46921 * 90.00156 * 9 7 5 11 11 H 1.48498 * 109.47055 * 209.99688 * 9 7 5 12 12 H 1.48498 * 109.47339 * 330.00176 * 9 7 5 13 13 C 1.34773 * 120.00090 * 90.00219 * 3 2 1 14 14 O 1.21587 * 119.99912 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00196 * 0.02562 * 13 3 2 16 16 C 1.39001 * 120.00525 * 179.97438 * 15 13 3 17 17 N 1.29258 * 124.95473 * 0.02562 * 16 15 13 18 18 C 1.32774 * 117.67023 * 179.97438 * 17 16 15 19 19 C 1.34410 * 113.22597 * 0.02562 * 18 17 16 20 20 S 1.70891 * 124.96281 * 179.97438 * 16 15 13 21 21 C 1.51041 * 125.20880 * 179.97438 * 19 18 17 22 22 C 1.53269 * 108.60587 * 343.92658 * 21 19 18 23 23 H 1.08995 * 109.54898 * 289.40214 * 22 21 19 24 24 C 1.52999 * 109.62707 * 169.15540 * 22 21 19 25 25 C 1.53150 * 108.98732 * 49.25835 * 22 21 19 26 26 C 1.52164 * 124.09150 * 180.02562 * 18 17 16 27 27 H 1.09009 * 109.46730 * 299.99659 * 1 2 3 28 28 H 1.08994 * 109.47863 * 59.99482 * 1 2 3 29 29 H 1.08997 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47056 * 240.00306 * 2 1 3 31 31 H 1.09001 * 109.47811 * 119.99857 * 2 1 3 32 32 H 1.09004 * 109.46788 * 29.99853 * 4 3 2 33 33 H 1.08989 * 109.47091 * 150.00021 * 4 3 2 34 34 H 0.97003 * 120.00255 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99669 * 359.97438 * 15 13 3 36 36 H 1.08994 * 109.61579 * 224.18780 * 21 19 18 37 37 H 1.08999 * 109.76165 * 103.74726 * 21 19 18 38 38 H 1.08998 * 109.47519 * 300.44394 * 24 22 21 39 39 H 1.09003 * 109.47409 * 60.44656 * 24 22 21 40 40 H 1.09005 * 109.46490 * 180.44277 * 24 22 21 41 41 H 1.09002 * 109.48240 * 49.65192 * 25 22 21 42 42 H 1.08995 * 109.47982 * 169.67199 * 25 22 21 43 43 H 1.09003 * 109.60484 * 42.64975 * 26 18 17 44 44 H 1.09005 * 109.59527 * 282.19285 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8351 -1.7039 6 1 4.3428 1.2309 -1.0960 7 6 4.1489 2.3897 -2.8781 8 7 5.3911 2.1834 -3.2577 9 14 3.0121 3.4341 -3.9299 10 1 3.1145 4.8546 -3.5092 11 1 3.4055 3.3109 -5.3566 12 1 1.6127 2.9673 -3.7602 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1627 1.1671 15 7 2.0189 1.3811 2.3344 16 6 2.2511 2.0361 3.5382 17 7 2.6800 3.2503 3.6499 18 6 2.8510 3.7336 4.8746 19 6 2.5405 2.8520 5.8405 20 16 2.0101 1.3541 5.0865 21 6 2.6352 3.1168 7.3245 22 6 3.5014 4.3618 7.5448 23 1 4.5400 4.1299 7.3092 24 6 3.3951 4.8104 9.0037 25 6 3.0055 5.4827 6.6265 26 6 3.3473 5.1404 5.1748 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5815 1.6878 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 5.7171 2.5739 -4.0836 35 1 1.6955 0.4665 2.3343 36 1 3.0922 2.2606 7.8205 37 1 1.6390 3.2873 7.7327 38 1 2.3555 5.0386 9.2388 39 1 3.7483 4.0117 9.6561 40 1 4.0058 5.7004 9.1555 41 1 1.9255 5.5869 6.7306 42 1 3.4893 6.4196 6.9026 43 1 2.8598 5.8505 4.5069 44 1 4.4273 5.1848 5.0339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049211090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:33 Heat of formation + Delta-G solvation = 17.116311 kcal Electronic energy + Delta-G solvation = -25101.941439 eV Core-core repulsion = 21567.208936 eV Total energy + Delta-G solvation = -3534.732504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46336 -39.48753 -37.15938 -35.44050 -34.44029 -32.60975 -31.34195 -30.39920 -30.34300 -27.87743 -26.09572 -24.35364 -23.50310 -23.04832 -22.06136 -21.11506 -19.88751 -18.72029 -17.91144 -17.07543 -16.90443 -16.47570 -15.44849 -15.03093 -14.96857 -14.57300 -14.27871 -14.17560 -13.90090 -13.71843 -13.49073 -13.27839 -13.01945 -12.79074 -12.50492 -12.36808 -12.24525 -11.97335 -11.83262 -11.68169 -11.47840 -11.05178 -11.03050 -10.84547 -10.77526 -10.50384 -10.47340 -10.27093 -10.06395 -9.77664 -9.49868 -9.05542 -8.90072 -8.57036 -7.98512 -7.66312 -6.06786 -4.05537 0.92930 1.06084 1.74075 2.93421 2.98935 3.31033 3.36714 3.39300 3.88319 4.03375 4.41157 4.49262 4.54976 4.59787 4.67622 5.05522 5.12207 5.23545 5.26389 5.32533 5.35493 5.41832 5.43234 5.46309 5.52388 5.57901 5.74368 5.76010 5.83591 5.87873 5.92908 6.04517 6.07302 6.17295 6.23494 6.30430 6.41201 6.61834 6.83302 7.13120 7.35487 7.61925 8.03468 8.42076 8.49287 8.96427 9.14155 9.53222 11.06722 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003204 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.762650 B = 8737.418990 C = 9770.483120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.601 5.601 4 C 0.233 3.767 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.694 3.306 14 O -0.520 6.520 15 N -0.649 5.649 16 C 0.315 3.685 17 N -0.475 5.475 18 C 0.107 3.893 19 C -0.259 4.259 20 S 0.086 5.914 21 C -0.024 4.024 22 C -0.089 4.089 23 H 0.076 0.924 24 C -0.145 4.145 25 C -0.113 4.113 26 C -0.041 4.041 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.649 -1.892 22.305 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.338 5.338 4 C 0.112 3.888 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.393 3.607 14 O -0.389 6.389 15 N -0.304 5.304 16 C -0.057 4.057 17 N -0.196 5.196 18 C -0.025 4.025 19 C -0.381 4.381 20 S 0.339 5.661 21 C -0.064 4.064 22 C -0.109 4.109 23 H 0.095 0.905 24 C -0.203 4.203 25 C -0.151 4.151 26 C -0.081 4.081 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.477 -1.729 21.803 23.836 hybrid contribution -0.297 0.579 -0.763 1.003 sum -9.774 -1.150 21.040 23.228 Atomic orbital electron populations 1.22278 0.96554 1.01746 1.02537 1.21430 0.93531 0.84011 1.02965 1.47278 1.67756 1.13386 1.05342 1.19614 0.97332 0.93245 0.78600 1.21344 0.95377 1.32991 1.07063 0.90781 1.24840 0.95003 0.95765 0.97348 1.69895 1.15134 1.44991 1.23564 0.86856 0.81410 0.81720 0.79717 1.19852 1.21090 1.19054 1.15919 0.79932 0.85149 0.79677 1.91029 1.47957 1.15576 1.84379 1.42628 1.68976 1.16819 1.02007 1.23025 0.99987 0.91991 0.90705 1.66140 1.18954 1.10146 1.24325 1.20757 0.99120 0.97602 0.84977 1.25520 1.16201 0.95647 1.00718 1.83568 1.67119 1.17051 0.98364 1.20075 1.00437 0.98065 0.87835 1.21210 0.99983 0.94460 0.95283 0.90520 1.21817 1.01951 1.01258 0.95251 1.21645 1.01693 0.98174 0.93550 1.20382 1.01473 0.89780 0.96441 0.93099 0.91803 0.91739 0.88993 0.92307 0.94913 0.94390 0.92565 0.74925 0.90853 0.90629 0.92550 0.92584 0.92340 0.91489 0.90831 0.89549 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.15 0.38 -1.72 16 2 C 0.10 1.59 5.89 -4.05 -0.02 1.56 16 3 N -0.60 -12.53 2.46 -180.81 -0.44 -12.98 16 4 C 0.23 5.73 4.23 -5.19 -0.02 5.71 16 5 C -0.53 -15.36 9.94 -34.44 -0.34 -15.71 16 6 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 9 Si 0.88 21.76 27.47 -169.99 -4.67 17.10 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.69 15.22 8.24 -86.93 -0.72 14.51 16 14 O -0.52 -13.93 14.56 5.29 0.08 -13.85 16 15 N -0.65 -11.08 5.27 -17.57 -0.09 -11.18 16 16 C 0.31 5.41 8.02 -87.65 -0.70 4.71 16 17 N -0.48 -9.28 8.61 -10.53 -0.09 -9.38 16 18 C 0.11 1.66 6.77 -82.81 -0.56 1.10 16 19 C -0.26 -3.32 6.38 -35.49 -0.23 -3.54 16 20 S 0.09 1.08 23.20 -107.50 -2.49 -1.42 16 21 C -0.02 -0.22 5.59 -27.58 -0.15 -0.37 16 22 C -0.09 -0.74 2.73 -90.40 -0.25 -0.98 16 23 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 24 C -0.15 -0.90 9.18 37.16 0.34 -0.56 16 25 C -0.11 -1.01 5.18 -26.64 -0.14 -1.15 16 26 C -0.04 -0.52 6.29 -27.15 -0.17 -0.69 16 27 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 31 H 0.06 0.73 6.36 -51.93 -0.33 0.40 16 32 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 33 H 0.04 1.01 6.85 -51.94 -0.36 0.65 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.41 5.36 6.55 -40.82 -0.27 5.10 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -36.74 367.46 -10.90 -47.64 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.82 Total: 0.82 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.68 Total: 4.92 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.15 Total: -60.75 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.10 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.74 -10.90 -47.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.758 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds