Wall clock time and date at job start Tue Mar 31 2020 13:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47201 * 2 1 4 4 C 1.46509 * 120.00165 * 270.00366 * 3 2 1 5 5 C 1.50700 * 109.47115 * 270.00267 * 4 3 2 6 6 H 1.07999 * 120.00072 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00112 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00245 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99628 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46921 * 90.00156 * 9 7 5 11 11 H 1.48498 * 109.47055 * 209.99688 * 9 7 5 12 12 H 1.48498 * 109.47339 * 330.00176 * 9 7 5 13 13 C 1.34773 * 120.00090 * 90.00219 * 3 2 1 14 14 O 1.21587 * 119.99912 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00196 * 0.02562 * 13 3 2 16 16 C 1.39001 * 120.00525 * 179.97438 * 15 13 3 17 17 N 1.29258 * 124.95473 * 0.02562 * 16 15 13 18 18 C 1.32774 * 117.67023 * 179.97438 * 17 16 15 19 19 C 1.34410 * 113.22597 * 0.02562 * 18 17 16 20 20 S 1.70891 * 124.96281 * 179.97438 * 16 15 13 21 21 C 1.51041 * 125.20880 * 179.97438 * 19 18 17 22 22 C 1.53269 * 108.60587 * 343.92658 * 21 19 18 23 23 H 1.08995 * 109.54898 * 289.40214 * 22 21 19 24 24 C 1.52999 * 109.62707 * 169.15540 * 22 21 19 25 25 C 1.53150 * 108.98732 * 49.25835 * 22 21 19 26 26 C 1.52164 * 124.09150 * 180.02562 * 18 17 16 27 27 H 1.09009 * 109.46730 * 299.99659 * 1 2 3 28 28 H 1.08994 * 109.47863 * 59.99482 * 1 2 3 29 29 H 1.08997 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47056 * 240.00306 * 2 1 3 31 31 H 1.09001 * 109.47811 * 119.99857 * 2 1 3 32 32 H 1.09004 * 109.46788 * 29.99853 * 4 3 2 33 33 H 1.08989 * 109.47091 * 150.00021 * 4 3 2 34 34 H 0.97003 * 120.00255 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99669 * 359.97438 * 15 13 3 36 36 H 1.08994 * 109.61579 * 224.18780 * 21 19 18 37 37 H 1.08999 * 109.76165 * 103.74726 * 21 19 18 38 38 H 1.08998 * 109.47519 * 300.44394 * 24 22 21 39 39 H 1.09003 * 109.47409 * 60.44656 * 24 22 21 40 40 H 1.09005 * 109.46490 * 180.44277 * 24 22 21 41 41 H 1.09002 * 109.48240 * 49.65192 * 25 22 21 42 42 H 1.08995 * 109.47982 * 169.67199 * 25 22 21 43 43 H 1.09003 * 109.60484 * 42.64975 * 26 18 17 44 44 H 1.09005 * 109.59527 * 282.19285 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8351 -1.7039 6 1 4.3428 1.2309 -1.0960 7 6 4.1489 2.3897 -2.8781 8 7 5.3911 2.1834 -3.2577 9 14 3.0121 3.4341 -3.9299 10 1 3.1145 4.8546 -3.5092 11 1 3.4055 3.3109 -5.3566 12 1 1.6127 2.9673 -3.7602 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1627 1.1671 15 7 2.0189 1.3811 2.3344 16 6 2.2511 2.0361 3.5382 17 7 2.6800 3.2503 3.6499 18 6 2.8510 3.7336 4.8746 19 6 2.5405 2.8520 5.8405 20 16 2.0101 1.3541 5.0865 21 6 2.6352 3.1168 7.3245 22 6 3.5014 4.3618 7.5448 23 1 4.5400 4.1299 7.3092 24 6 3.3951 4.8104 9.0037 25 6 3.0055 5.4827 6.6265 26 6 3.3473 5.1404 5.1748 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5815 1.6878 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 5.7171 2.5739 -4.0836 35 1 1.6955 0.4665 2.3343 36 1 3.0922 2.2606 7.8205 37 1 1.6390 3.2873 7.7327 38 1 2.3555 5.0386 9.2388 39 1 3.7483 4.0117 9.6561 40 1 4.0058 5.7004 9.1555 41 1 1.9255 5.5869 6.7306 42 1 3.4893 6.4196 6.9026 43 1 2.8598 5.8505 4.5069 44 1 4.4273 5.1848 5.0339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049211090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:32 Heat of formation + Delta-G solvation = -6.732375 kcal Electronic energy + Delta-G solvation = -25102.975596 eV Core-core repulsion = 21567.208936 eV Total energy + Delta-G solvation = -3535.766660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82307 -40.77687 -38.18154 -37.01443 -35.90103 -34.72090 -32.22182 -31.89732 -31.28821 -29.65421 -27.09404 -25.59684 -24.69158 -24.43921 -23.42202 -22.25475 -21.03493 -20.00687 -19.22408 -19.07309 -18.30588 -17.79219 -16.87904 -16.69263 -16.12242 -15.90595 -15.54532 -15.21738 -15.15683 -14.96681 -14.81868 -14.50548 -14.10024 -14.00107 -13.92822 -13.56440 -13.34643 -13.19499 -13.05040 -12.74628 -12.64499 -12.46387 -12.44097 -12.11208 -12.02826 -11.76775 -11.74140 -11.47887 -11.46849 -11.35739 -11.25388 -10.84310 -10.25168 -10.13324 -9.57305 -8.97613 -8.35137 -6.40290 -0.23101 -0.08983 0.63958 1.30925 1.36811 1.44143 1.58522 1.73010 2.29917 2.30391 2.68946 2.99536 3.39712 3.79152 3.87870 3.92977 3.98923 4.19383 4.29917 4.33864 4.48298 4.52356 4.58381 4.69885 4.74153 4.78699 4.82359 4.86040 4.93052 4.94887 4.98302 5.02232 5.10946 5.18466 5.24857 5.32585 5.40957 5.43254 5.43970 5.51280 5.55926 5.70401 6.23453 6.60502 6.68287 7.06945 7.21527 7.53986 8.82186 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003204 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.762650 B = 8737.418990 C = 9770.483120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.607 5.607 4 C 0.244 3.756 5 C -0.536 4.536 6 H 0.025 0.975 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.234 1.234 13 C 0.691 3.309 14 O -0.583 6.583 15 N -0.635 5.635 16 C 0.263 3.737 17 N -0.530 5.530 18 C 0.065 3.935 19 C -0.243 4.243 20 S 0.182 5.818 21 C -0.027 4.027 22 C -0.087 4.087 23 H 0.068 0.932 24 C -0.139 4.139 25 C -0.104 4.104 26 C -0.042 4.042 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.269 0.731 35 H 0.430 0.570 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 -3.023 24.834 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.343 5.343 4 C 0.121 3.879 5 C -0.575 4.575 6 H 0.044 0.956 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.157 1.157 13 C 0.390 3.610 14 O -0.457 6.457 15 N -0.292 5.292 16 C -0.107 4.107 17 N -0.251 5.251 18 C -0.065 4.065 19 C -0.365 4.365 20 S 0.435 5.565 21 C -0.067 4.067 22 C -0.107 4.107 23 H 0.086 0.914 24 C -0.197 4.197 25 C -0.142 4.142 26 C -0.082 4.082 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.272 0.728 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.081 -2.951 24.388 27.376 hybrid contribution 0.584 0.845 -1.351 1.697 sum -11.497 -2.106 23.037 25.833 Atomic orbital electron populations 1.22193 0.93597 1.04024 1.02172 1.21808 0.95875 0.80924 1.04071 1.47271 1.67710 1.15347 1.03977 1.19256 0.94930 0.92717 0.80966 1.21562 0.97113 1.32198 1.06605 0.95624 1.25851 0.96771 0.97110 0.98961 1.70051 1.17472 1.46588 1.24522 0.85709 0.80594 0.78824 0.77758 1.20564 1.19765 1.15710 1.16140 0.79273 0.84657 0.80917 1.90974 1.50703 1.18394 1.85632 1.42166 1.68814 1.17274 1.00960 1.23334 1.02245 0.92808 0.92295 1.66074 1.19581 1.12132 1.27325 1.21095 1.01566 0.99287 0.84570 1.26252 1.12533 0.95320 1.02425 1.83115 1.64835 1.14963 0.93597 1.20351 1.02039 0.99271 0.85030 1.21203 0.99233 0.93696 0.96551 0.91366 1.21769 1.02716 1.01806 0.93387 1.21626 1.02107 0.99402 0.91044 1.20457 1.00624 0.88450 0.98700 0.92715 0.92938 0.88024 0.89676 0.89537 0.92343 0.96565 0.92242 0.72771 0.88850 0.88499 0.91717 0.91599 0.91813 0.91114 0.89109 0.91518 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 10.24 71.98 0.74 -2.78 16 2 C 0.10 2.78 5.89 86.38 0.51 3.29 16 3 N -0.61 -25.83 2.46 -844.21 -2.07 -27.90 16 4 C 0.24 12.27 4.23 85.63 0.36 12.63 16 5 C -0.54 -32.54 9.94 25.60 0.25 -32.28 16 6 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 7 C 0.01 0.66 5.47 84.66 0.46 1.13 16 8 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 9 Si 0.95 45.55 27.47 68.60 1.88 47.43 16 10 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.23 -9.96 6.54 99.48 0.65 -9.31 16 13 C 0.69 31.51 8.24 179.06 1.48 32.99 16 14 O -0.58 -33.24 14.56 -3.99 -0.06 -33.30 16 15 N -0.63 -21.92 5.27 -327.77 -1.73 -23.65 16 16 C 0.26 9.12 8.02 179.31 1.44 10.56 16 17 N -0.53 -21.65 8.61 -187.23 -1.61 -23.26 16 18 C 0.07 2.07 6.77 42.01 0.28 2.36 16 19 C -0.24 -5.81 6.38 24.92 0.16 -5.65 16 20 S 0.18 4.12 23.20 -56.49 -1.31 2.81 16 21 C -0.03 -0.40 5.59 30.05 0.17 -0.23 16 22 C -0.09 -1.21 2.73 -10.65 -0.03 -1.24 16 23 H 0.07 1.09 8.11 -2.39 -0.02 1.07 16 24 C -0.14 -1.24 9.18 71.98 0.66 -0.58 16 25 C -0.10 -1.75 5.18 30.65 0.16 -1.59 16 26 C -0.04 -1.12 6.29 30.32 0.19 -0.93 16 27 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 31 H 0.09 2.01 6.36 -2.39 -0.02 1.99 16 32 H 0.06 2.64 7.13 -2.38 -0.02 2.62 16 33 H 0.02 0.89 6.85 -2.39 -0.02 0.87 16 34 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 35 H 0.43 10.72 6.55 -92.71 -0.61 10.11 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.14 8.11 -2.39 -0.02 1.12 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 42 H 0.09 1.20 8.11 -2.39 -0.02 1.18 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 44 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -87.75 367.46 2.57 -85.18 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.34 Total: 16.04 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 6.83 Total: 17.67 kcal Atomic # 7 Polarization: -130.72 SS G_CDS: -5.11 Total: -135.83 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.06 Total: -33.30 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.31 Total: 2.81 kcal Total: -87.75 2.57 -85.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.446 kcal (2) G-P(sol) polarization free energy of solvation -87.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds