Wall clock time and date at job start Tue Mar 31 2020 13:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46863 * 2 1 4 4 C 1.46503 * 119.99776 * 269.99752 * 3 2 1 5 5 C 1.50709 * 109.47126 * 269.99875 * 4 3 2 6 6 H 1.07996 * 119.99693 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99694 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00263 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99758 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47106 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47005 * 120.00429 * 9 7 5 12 12 H 1.48498 * 109.47308 * 240.00367 * 9 7 5 13 13 C 1.34774 * 120.00405 * 90.00447 * 3 2 1 14 14 O 1.21579 * 120.00533 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99548 * 359.97438 * 13 3 2 16 16 C 1.39005 * 120.00077 * 180.02562 * 15 13 3 17 17 N 1.29249 * 124.95572 * 0.03258 * 16 15 13 18 18 C 1.32785 * 117.67366 * 179.97438 * 17 16 15 19 19 C 1.34402 * 113.22055 * 359.97438 * 18 17 16 20 20 S 1.70894 * 124.96212 * 179.72245 * 16 15 13 21 21 C 1.51038 * 125.20928 * 180.02562 * 19 18 17 22 22 C 1.53270 * 108.60377 * 16.07914 * 21 19 18 23 23 H 1.08994 * 109.54875 * 70.57424 * 22 21 19 24 24 C 1.53002 * 109.63280 * 190.82621 * 22 21 19 25 25 C 1.53146 * 108.98204 * 310.72692 * 22 21 19 26 26 C 1.52137 * 124.09931 * 179.97438 * 18 17 16 27 27 H 1.09000 * 109.47250 * 300.00234 * 1 2 3 28 28 H 1.08995 * 109.47169 * 60.00210 * 1 2 3 29 29 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47250 * 239.99766 * 2 1 3 31 31 H 1.08995 * 109.47169 * 119.99789 * 2 1 3 32 32 H 1.08995 * 109.47197 * 30.00023 * 4 3 2 33 33 H 1.09005 * 109.46816 * 150.00668 * 4 3 2 34 34 H 0.97003 * 119.99676 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00675 * 0.02562 * 15 13 3 36 36 H 1.09007 * 109.61444 * 256.34835 * 21 19 18 37 37 H 1.08997 * 109.62075 * 135.81903 * 21 19 18 38 38 H 1.08993 * 109.46639 * 179.55073 * 24 22 21 39 39 H 1.08997 * 109.47238 * 299.55167 * 24 22 21 40 40 H 1.08999 * 109.47235 * 59.55255 * 24 22 21 41 41 H 1.08999 * 109.48240 * 310.35029 * 25 22 21 42 42 H 1.08996 * 109.48630 * 190.32181 * 25 22 21 43 43 H 1.09002 * 109.59311 * 317.34167 * 26 18 17 44 44 H 1.09001 * 109.59439 * 77.78575 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3896 -2.8779 8 7 3.3490 3.1256 -3.6181 9 14 5.9131 2.0956 -3.4175 10 1 6.6005 1.2396 -2.4174 11 1 5.9201 1.4164 -4.7381 12 1 6.6209 3.3965 -3.5262 13 6 2.2429 2.0166 1.1671 14 8 2.6486 3.1627 1.1672 15 7 2.0179 1.3814 2.3343 16 6 2.2492 2.0368 3.5382 17 7 2.6777 3.2510 3.6498 18 6 2.8478 3.7348 4.8747 19 6 2.5357 2.8538 5.8405 20 16 2.0012 1.3573 5.0865 21 6 2.6278 3.1194 7.3245 22 6 2.7352 4.6324 7.5446 23 1 1.7813 5.1039 7.3084 24 6 3.0988 4.9150 9.0037 25 6 3.8253 5.1932 6.6268 26 6 3.3446 5.1411 5.1749 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 3.6751 3.5160 -4.4441 35 1 1.6946 0.4669 2.3344 36 1 3.5117 2.6270 7.7301 37 1 1.7345 2.7399 7.8204 38 1 3.1822 5.9911 9.1554 39 1 2.3221 4.5153 9.6557 40 1 4.0510 4.4400 9.2395 41 1 4.7313 4.5962 6.7315 42 1 4.0369 6.2263 6.9027 43 1 4.1702 5.3874 4.5072 44 1 2.5321 5.8538 5.0334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049211091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:36 Heat of formation + Delta-G solvation = 12.349022 kcal Electronic energy + Delta-G solvation = -25066.572035 eV Core-core repulsion = 21531.632807 eV Total energy + Delta-G solvation = -3534.939229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41192 -39.41698 -37.11877 -35.33180 -34.36954 -32.67946 -31.32156 -30.32181 -30.15084 -27.36736 -26.00351 -24.32989 -23.52429 -23.09299 -22.18909 -21.15466 -19.85617 -18.71111 -17.88368 -17.01328 -16.44050 -16.39351 -15.44494 -15.01705 -14.87364 -14.50649 -14.27323 -14.13561 -14.06012 -13.62784 -13.34688 -13.19047 -13.02350 -12.79416 -12.41653 -12.26610 -12.08503 -11.84210 -11.76810 -11.66075 -11.21306 -11.01894 -10.94309 -10.81529 -10.77005 -10.55865 -10.45961 -10.17594 -10.09534 -9.68990 -9.57741 -9.03146 -8.83397 -8.42050 -7.93566 -7.60851 -6.02758 -4.07104 0.95900 1.09076 1.76489 3.01239 3.02074 3.31295 3.39179 3.43638 3.96836 4.11997 4.45833 4.54545 4.55836 4.61059 4.70144 5.06882 5.19130 5.26071 5.31502 5.33735 5.36274 5.44141 5.47279 5.52290 5.56336 5.62297 5.75867 5.77639 5.88508 5.90088 5.94720 6.07255 6.15380 6.18896 6.26390 6.40759 6.50228 6.73322 7.25626 7.48629 7.56826 7.94067 8.11095 8.24275 8.55172 8.93974 9.24674 9.58263 11.05242 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.003203 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.767892 B = 8738.925558 C = 9872.086421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.606 5.606 4 C 0.262 3.738 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.691 3.309 14 O -0.520 6.520 15 N -0.650 5.650 16 C 0.316 3.684 17 N -0.476 5.476 18 C 0.107 3.893 19 C -0.260 4.260 20 S 0.083 5.917 21 C -0.024 4.024 22 C -0.089 4.089 23 H 0.076 0.924 24 C -0.145 4.145 25 C -0.113 4.113 26 C -0.041 4.041 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -3.921 22.832 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.342 5.342 4 C 0.143 3.857 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.390 3.610 14 O -0.390 6.390 15 N -0.306 5.306 16 C -0.055 4.055 17 N -0.196 5.196 18 C -0.024 4.024 19 C -0.382 4.382 20 S 0.335 5.665 21 C -0.064 4.064 22 C -0.109 4.109 23 H 0.094 0.906 24 C -0.203 4.203 25 C -0.151 4.151 26 C -0.081 4.081 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.250 0.750 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.922 -3.694 22.299 23.132 hybrid contribution 1.031 -0.065 -0.515 1.154 sum -3.891 -3.758 21.784 22.445 Atomic orbital electron populations 1.22268 0.96602 1.01551 1.02629 1.21398 0.93631 0.84392 1.02488 1.47656 1.67387 1.13258 1.05934 1.19258 0.96290 0.93540 0.76659 1.21487 0.96966 1.31842 1.06145 0.92451 1.24919 0.97836 0.94919 0.96392 1.69941 1.35581 1.33508 1.14356 0.86444 0.84689 0.78071 0.78212 1.19862 1.20995 1.20855 1.15993 0.80139 0.85191 0.79674 1.91026 1.48131 1.15481 1.84317 1.42728 1.68958 1.16813 1.02077 1.23052 0.99849 0.91905 0.90732 1.66147 1.19181 1.10038 1.24247 1.20756 0.99028 0.97631 0.85008 1.25505 1.16182 0.95832 1.00689 1.83562 1.66967 1.17416 0.98530 1.20079 1.02090 0.96351 0.87878 1.21205 0.99720 0.94673 0.95278 0.90592 1.21816 1.01527 1.01691 0.95255 1.21650 0.98408 1.01508 0.93545 1.20376 1.01466 0.89741 0.96486 0.93202 0.91619 0.91962 0.89242 0.92686 0.94633 0.93678 0.92771 0.75030 0.90622 0.90890 0.92356 0.92609 0.92522 0.91435 0.90842 0.89472 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.65 5.89 -4.04 -0.02 1.63 16 3 N -0.61 -13.02 2.46 -180.80 -0.44 -13.46 16 4 C 0.26 6.89 5.16 -5.19 -0.03 6.86 16 5 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.69 15.49 8.24 -86.92 -0.72 14.77 16 14 O -0.52 -14.25 14.56 5.30 0.08 -14.17 16 15 N -0.65 -11.31 5.27 -17.57 -0.09 -11.41 16 16 C 0.32 5.51 8.02 -87.65 -0.70 4.81 16 17 N -0.48 -9.39 8.61 -10.54 -0.09 -9.48 16 18 C 0.11 1.69 6.77 -82.82 -0.56 1.12 16 19 C -0.26 -3.37 6.38 -35.50 -0.23 -3.60 16 20 S 0.08 1.05 23.20 -107.50 -2.49 -1.45 16 21 C -0.02 -0.22 5.59 -27.58 -0.15 -0.38 16 22 C -0.09 -0.73 2.73 -90.40 -0.25 -0.98 16 23 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 24 C -0.15 -0.90 9.18 37.16 0.34 -0.56 16 25 C -0.11 -1.04 5.18 -26.64 -0.14 -1.18 16 26 C -0.04 -0.52 6.29 -27.15 -0.17 -0.69 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 31 H 0.05 0.70 6.36 -51.93 -0.33 0.37 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.41 5.50 6.55 -40.82 -0.27 5.23 16 36 H 0.08 0.64 8.12 -51.92 -0.42 0.22 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -35.67 371.07 -11.26 -46.93 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.86 Total: 0.07 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -2.67 Total: 6.24 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.11 Total: -60.41 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.67 -11.26 -46.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.282 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds