Wall clock time and date at job start Tue Mar 31 2020 13:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46863 * 2 1 4 4 C 1.46503 * 119.99776 * 269.99752 * 3 2 1 5 5 C 1.50709 * 109.47126 * 269.99875 * 4 3 2 6 6 H 1.07996 * 119.99693 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99694 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00263 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99758 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47106 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47005 * 120.00429 * 9 7 5 12 12 H 1.48498 * 109.47308 * 240.00367 * 9 7 5 13 13 C 1.34774 * 120.00405 * 90.00447 * 3 2 1 14 14 O 1.21579 * 120.00533 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99548 * 359.97438 * 13 3 2 16 16 C 1.39005 * 120.00077 * 180.02562 * 15 13 3 17 17 N 1.29249 * 124.95572 * 0.03258 * 16 15 13 18 18 C 1.32785 * 117.67366 * 179.97438 * 17 16 15 19 19 C 1.34402 * 113.22055 * 359.97438 * 18 17 16 20 20 S 1.70894 * 124.96212 * 179.72245 * 16 15 13 21 21 C 1.51038 * 125.20928 * 180.02562 * 19 18 17 22 22 C 1.53270 * 108.60377 * 16.07914 * 21 19 18 23 23 H 1.08994 * 109.54875 * 70.57424 * 22 21 19 24 24 C 1.53002 * 109.63280 * 190.82621 * 22 21 19 25 25 C 1.53146 * 108.98204 * 310.72692 * 22 21 19 26 26 C 1.52137 * 124.09931 * 179.97438 * 18 17 16 27 27 H 1.09000 * 109.47250 * 300.00234 * 1 2 3 28 28 H 1.08995 * 109.47169 * 60.00210 * 1 2 3 29 29 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47250 * 239.99766 * 2 1 3 31 31 H 1.08995 * 109.47169 * 119.99789 * 2 1 3 32 32 H 1.08995 * 109.47197 * 30.00023 * 4 3 2 33 33 H 1.09005 * 109.46816 * 150.00668 * 4 3 2 34 34 H 0.97003 * 119.99676 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00675 * 0.02562 * 15 13 3 36 36 H 1.09007 * 109.61444 * 256.34835 * 21 19 18 37 37 H 1.08997 * 109.62075 * 135.81903 * 21 19 18 38 38 H 1.08993 * 109.46639 * 179.55073 * 24 22 21 39 39 H 1.08997 * 109.47238 * 299.55167 * 24 22 21 40 40 H 1.08999 * 109.47235 * 59.55255 * 24 22 21 41 41 H 1.08999 * 109.48240 * 310.35029 * 25 22 21 42 42 H 1.08996 * 109.48630 * 190.32181 * 25 22 21 43 43 H 1.09002 * 109.59311 * 317.34167 * 26 18 17 44 44 H 1.09001 * 109.59439 * 77.78575 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3896 -2.8779 8 7 3.3490 3.1256 -3.6181 9 14 5.9131 2.0956 -3.4175 10 1 6.6005 1.2396 -2.4174 11 1 5.9201 1.4164 -4.7381 12 1 6.6209 3.3965 -3.5262 13 6 2.2429 2.0166 1.1671 14 8 2.6486 3.1627 1.1672 15 7 2.0179 1.3814 2.3343 16 6 2.2492 2.0368 3.5382 17 7 2.6777 3.2510 3.6498 18 6 2.8478 3.7348 4.8747 19 6 2.5357 2.8538 5.8405 20 16 2.0012 1.3573 5.0865 21 6 2.6278 3.1194 7.3245 22 6 2.7352 4.6324 7.5446 23 1 1.7813 5.1039 7.3084 24 6 3.0988 4.9150 9.0037 25 6 3.8253 5.1932 6.6268 26 6 3.3446 5.1411 5.1749 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 3.6751 3.5160 -4.4441 35 1 1.6946 0.4669 2.3344 36 1 3.5117 2.6270 7.7301 37 1 1.7345 2.7399 7.8204 38 1 3.1822 5.9911 9.1554 39 1 2.3221 4.5153 9.6557 40 1 4.0510 4.4400 9.2395 41 1 4.7313 4.5962 6.7315 42 1 4.0369 6.2263 6.9027 43 1 4.1702 5.3874 4.5072 44 1 2.5321 5.8538 5.0334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049211091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:35 Heat of formation + Delta-G solvation = -9.697791 kcal Electronic energy + Delta-G solvation = -25067.528057 eV Core-core repulsion = 21531.632807 eV Total energy + Delta-G solvation = -3535.895250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79026 -40.75026 -38.15821 -36.97117 -35.87880 -34.74377 -32.20209 -31.67559 -31.26705 -29.21496 -27.07032 -25.67392 -24.87364 -24.46121 -23.50079 -22.27065 -21.02311 -20.02160 -19.17691 -18.63809 -18.25112 -17.76066 -16.89836 -16.75922 -16.04490 -15.81230 -15.57963 -15.37215 -15.04529 -14.97834 -14.61441 -14.44828 -14.10365 -14.00665 -13.71897 -13.43615 -13.28323 -13.09960 -13.04227 -12.75378 -12.73500 -12.55169 -12.43730 -12.24441 -12.02378 -11.74844 -11.73059 -11.47411 -11.44596 -11.32286 -11.23733 -10.65970 -10.22123 -10.12638 -9.57991 -8.97367 -8.23515 -6.38135 -0.21601 -0.07778 0.65046 1.33927 1.37151 1.48153 1.63090 1.74795 2.29919 2.39715 2.74631 3.05910 3.41537 3.79687 3.88443 3.93729 4.00498 4.19726 4.31555 4.35600 4.48917 4.52556 4.59342 4.74856 4.75895 4.82847 4.86567 4.92079 4.97664 4.99012 5.03038 5.12089 5.16613 5.19525 5.25739 5.32990 5.42576 5.44433 5.53655 5.55935 5.65749 5.86741 6.04276 6.69784 6.74635 7.11089 7.29058 7.59520 8.83479 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.003203 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.767892 B = 8738.925558 C = 9872.086421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.611 5.611 4 C 0.280 3.720 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.265 1.265 12 H -0.283 1.283 13 C 0.690 3.310 14 O -0.584 6.584 15 N -0.635 5.635 16 C 0.264 3.736 17 N -0.531 5.531 18 C 0.065 3.935 19 C -0.243 4.243 20 S 0.181 5.819 21 C -0.027 4.027 22 C -0.085 4.085 23 H 0.071 0.929 24 C -0.140 4.140 25 C -0.105 4.105 26 C -0.042 4.042 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.032 0.968 33 H -0.005 1.005 34 H 0.268 0.732 35 H 0.430 0.570 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 -6.233 25.995 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.346 5.346 4 C 0.159 3.841 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.190 1.190 12 H -0.209 1.209 13 C 0.389 3.611 14 O -0.459 6.459 15 N -0.293 5.293 16 C -0.106 4.106 17 N -0.252 5.252 18 C -0.065 4.065 19 C -0.366 4.366 20 S 0.434 5.566 21 C -0.067 4.067 22 C -0.105 4.105 23 H 0.090 0.910 24 C -0.197 4.197 25 C -0.143 4.143 26 C -0.082 4.082 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.272 0.728 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.862 -6.089 25.513 26.676 hybrid contribution 0.944 0.642 -1.346 1.765 sum -3.918 -5.447 24.167 25.081 Atomic orbital electron populations 1.22190 0.94259 1.03874 1.01738 1.21775 0.95530 0.81168 1.04048 1.47529 1.67504 1.15272 1.04340 1.18671 0.95432 0.91243 0.78799 1.21720 0.97896 1.32005 1.06392 0.93181 1.25830 1.02347 0.94455 0.96410 1.70054 1.37646 1.34176 1.14835 0.85372 0.79036 0.77948 0.78439 1.19424 1.19005 1.20894 1.16155 0.79471 0.84607 0.80881 1.90972 1.50936 1.18363 1.85604 1.42202 1.68830 1.17267 1.00952 1.23344 1.02189 0.92748 0.92306 1.66078 1.19770 1.12042 1.27322 1.21090 1.01524 0.99323 0.84574 1.26248 1.12434 0.95479 1.02411 1.83098 1.64617 1.15255 0.93592 1.20361 1.03932 0.97370 0.85036 1.21195 0.99042 0.93850 0.96439 0.91023 1.21771 1.02171 1.02317 0.93456 1.21635 0.98647 1.02845 0.91172 1.20450 1.00485 0.88702 0.98570 0.92864 0.93782 0.87884 0.89686 0.89091 0.94962 0.98670 0.92354 0.72821 0.88793 0.88628 0.91766 0.91478 0.91933 0.91463 0.89063 0.91893 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.27 16 2 C 0.10 2.97 5.89 86.38 0.51 3.48 16 3 N -0.61 -27.31 2.46 -844.20 -2.07 -29.38 16 4 C 0.28 15.65 5.16 85.64 0.44 16.10 16 5 C -0.54 -32.26 9.39 25.60 0.24 -32.02 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -57.32 13.29 21.44 0.28 -57.03 16 9 Si 0.97 46.34 29.54 68.60 2.03 48.37 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 C 0.69 32.43 8.24 179.06 1.48 33.91 16 14 O -0.58 -34.45 14.56 -3.97 -0.06 -34.50 16 15 N -0.63 -22.32 5.27 -327.77 -1.73 -24.05 16 16 C 0.26 9.25 8.02 179.31 1.44 10.69 16 17 N -0.53 -21.92 8.61 -187.25 -1.61 -23.53 16 18 C 0.07 2.09 6.77 42.00 0.28 2.38 16 19 C -0.24 -5.85 6.38 24.92 0.16 -5.69 16 20 S 0.18 4.13 23.20 -56.49 -1.31 2.82 16 21 C -0.03 -0.40 5.59 30.05 0.17 -0.24 16 22 C -0.09 -1.17 2.73 -10.65 -0.03 -1.20 16 23 H 0.07 1.08 8.11 -2.39 -0.02 1.06 16 24 C -0.14 -1.23 9.18 71.98 0.66 -0.57 16 25 C -0.11 -1.81 5.18 30.65 0.16 -1.65 16 26 C -0.04 -1.12 6.29 30.32 0.19 -0.93 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 31 H 0.09 2.11 6.36 -2.39 -0.02 2.10 16 32 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 33 H 0.00 -0.32 7.42 -2.38 -0.02 -0.33 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.43 10.92 6.55 -92.71 -0.61 10.31 16 36 H 0.09 1.17 8.12 -2.38 -0.02 1.15 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 42 H 0.09 1.23 8.11 -2.39 -0.02 1.21 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -84.70 371.07 2.82 -81.87 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.40 Total: 13.50 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 6.90 Total: 21.94 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -5.13 Total: -134.00 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.06 Total: -34.50 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.31 Total: 2.82 kcal Total: -84.70 2.82 -81.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.177 kcal (2) G-P(sol) polarization free energy of solvation -84.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds