Wall clock time and date at job start Tue Mar 31 2020 13:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47247 * 2 1 4 4 C 1.37101 * 119.99642 * 264.76778 * 3 2 1 5 5 H 1.07999 * 119.99637 * 138.85522 * 4 3 2 6 6 C 1.38946 * 119.99938 * 318.85117 * 4 3 2 7 7 N 1.31406 * 120.00133 * 341.83050 * 6 4 3 8 8 Si 1.86801 * 120.00002 * 161.83108 * 6 4 3 9 9 H 1.48499 * 109.47062 * 89.99854 * 8 6 4 10 10 H 1.48502 * 109.47330 * 209.99897 * 8 6 4 11 11 H 1.48499 * 109.46991 * 329.99896 * 8 6 4 12 12 C 1.34774 * 120.00277 * 84.76429 * 3 2 1 13 13 O 1.21291 * 120.00146 * 180.02562 * 12 3 2 14 14 C 1.50702 * 120.00096 * 0.02562 * 12 3 2 15 15 C 1.52997 * 109.47149 * 179.97438 * 14 12 3 16 16 C 1.50705 * 109.46804 * 179.97438 * 15 14 12 17 17 C 1.38621 * 120.71081 * 90.00788 * 16 15 14 18 18 C 1.50704 * 120.40293 * 0.03793 * 17 16 15 19 19 N 1.32264 * 119.20113 * 180.02562 * 17 16 15 20 20 C 1.32553 * 120.73558 * 359.97438 * 19 17 16 21 21 S 1.76198 * 119.22582 * 180.02562 * 20 19 17 22 22 C 1.80991 * 100.00246 * 180.02562 * 21 20 19 23 23 N 1.32560 * 121.55441 * 0.02562 * 20 19 17 24 24 C 1.32258 * 120.73245 * 0.02562 * 23 20 19 25 25 C 1.50699 * 120.39580 * 180.02562 * 24 23 20 26 26 H 1.09002 * 109.46640 * 60.00243 * 1 2 3 27 27 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47053 * 300.00753 * 1 2 3 29 29 H 1.08992 * 109.47413 * 239.99600 * 2 1 3 30 30 H 1.09001 * 109.46948 * 119.99307 * 2 1 3 31 31 H 0.97006 * 120.00319 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46672 * 60.00055 * 14 12 3 33 33 H 1.08996 * 109.47270 * 300.00048 * 14 12 3 34 34 H 1.09003 * 109.46975 * 60.00624 * 15 14 12 35 35 H 1.08997 * 109.47669 * 299.99893 * 15 14 12 36 36 H 1.08998 * 109.46755 * 269.98243 * 18 17 16 37 37 H 1.08997 * 109.46693 * 29.98165 * 18 17 16 38 38 H 1.08997 * 109.47183 * 149.97963 * 18 17 16 39 39 H 1.09004 * 109.47174 * 179.97438 * 22 21 20 40 40 H 1.09007 * 109.47439 * 299.99794 * 22 21 20 41 41 H 1.08996 * 109.47333 * 60.00151 * 22 21 20 42 42 H 1.08994 * 109.47766 * 269.97922 * 25 24 23 43 43 H 1.09004 * 109.47368 * 29.98178 * 25 24 23 44 44 H 1.09003 * 109.46813 * 149.97805 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9913 -1.1824 5 1 2.0744 3.0217 -1.3535 6 6 3.0372 1.2840 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0501 1.9002 -3.9239 9 1 4.2057 2.8116 -4.1214 10 1 3.1661 0.7458 -4.8508 11 1 1.7886 2.6330 -4.2014 12 6 2.1426 2.0521 1.1623 13 8 2.5465 3.1958 1.1622 14 6 1.7797 1.3813 2.4620 15 6 2.0116 2.3539 3.6201 16 6 1.6481 1.6832 4.9198 17 6 2.5962 0.9722 5.6390 18 6 4.0108 0.8586 5.1319 19 7 2.2444 0.3950 6.7758 20 6 1.0023 0.4912 7.2285 21 16 0.5773 -0.2930 8.7480 22 6 -1.1720 0.1585 8.8563 23 7 0.0723 1.1635 6.5650 24 6 0.3583 1.7631 5.4213 25 6 -0.7047 2.5258 4.6735 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 4.1600 -0.3120 -2.5278 32 1 2.4019 0.4970 2.6006 33 1 0.7305 1.0872 2.4386 34 1 1.3898 3.2384 3.4818 35 1 3.0610 2.6475 3.6435 36 1 4.0996 -0.0234 4.4977 37 1 4.2622 1.7482 4.5544 38 1 4.6936 0.7690 5.9767 39 1 -1.5999 -0.2609 9.7669 40 1 -1.2665 1.2443 8.8766 41 1 -1.7034 -0.2363 7.9904 42 1 -1.2143 1.8553 3.9816 43 1 -1.4259 2.9332 5.3821 44 1 -0.2429 3.3408 4.1161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:59 Heat of formation + Delta-G solvation = -2.158736 kcal Electronic energy + Delta-G solvation = -25346.392239 eV Core-core repulsion = 21810.823907 eV Total energy + Delta-G solvation = -3535.568332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18118 -38.64950 -35.44263 -34.91338 -34.69510 -32.14649 -30.70586 -29.79495 -29.45755 -28.84486 -27.64181 -25.86127 -24.33621 -22.44142 -21.74769 -21.72408 -18.75150 -18.07788 -17.71189 -16.83736 -16.11415 -15.52689 -15.16340 -15.09786 -14.56061 -14.22713 -13.88792 -13.79395 -13.74657 -13.59037 -13.40683 -13.01994 -12.88917 -12.76431 -12.68166 -12.61186 -12.42815 -12.08479 -11.96829 -11.61949 -11.48919 -11.10871 -11.06055 -10.94622 -10.76158 -10.49143 -10.37771 -10.34361 -10.26131 -10.10640 -9.65088 -9.27985 -8.94156 -8.42995 -7.83867 -7.44360 -6.34115 -4.02567 0.75112 1.02077 1.11404 1.96652 3.15972 3.24366 3.28840 3.53991 3.89599 3.98108 4.14134 4.32687 4.54001 4.69657 4.85406 4.91972 4.98342 4.98704 5.12922 5.32723 5.41085 5.46117 5.50053 5.56240 5.58390 5.60585 5.74165 5.76762 5.80827 5.84021 6.01751 6.06474 6.16905 6.25775 6.29754 6.41181 6.50378 6.57453 6.83306 6.94311 7.18404 7.56294 7.85638 8.27996 8.49397 9.17824 9.38359 10.00109 10.71039 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.002837 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.686306 B = 9868.824716 C =10081.976825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.441 5.441 4 C -0.309 4.309 5 H 0.087 0.913 6 C 0.039 3.961 7 N -0.872 5.872 8 Si 0.917 3.083 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.463 3.537 13 O -0.582 6.582 14 C -0.128 4.128 15 C -0.056 4.056 16 C -0.183 4.183 17 C 0.193 3.807 18 C -0.112 4.112 19 N -0.506 5.506 20 C 0.290 3.710 21 S -0.010 6.010 22 C -0.141 4.141 23 N -0.530 5.530 24 C 0.191 3.809 25 C -0.110 4.110 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 -2.368 15.890 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.160 5.160 4 C -0.437 4.437 5 H 0.105 0.895 6 C -0.166 4.166 7 N -0.509 5.509 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.251 3.749 13 O -0.465 6.465 14 C -0.168 4.168 15 C -0.095 4.095 16 C -0.190 4.190 17 C 0.045 3.955 18 C -0.169 4.169 19 N -0.223 5.223 20 C -0.086 4.086 21 S 0.222 5.778 22 C -0.310 4.310 23 N -0.249 5.249 24 C 0.043 3.957 25 C -0.167 4.167 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.371 -3.087 17.462 19.203 hybrid contribution -0.495 1.050 -2.522 2.776 sum -7.866 -2.036 14.940 17.006 Atomic orbital electron populations 1.22223 0.98294 1.00337 1.01477 1.21444 0.91547 0.85716 1.03394 1.43449 1.55997 1.11672 1.04896 1.19347 1.34886 0.98489 0.91004 0.89507 1.25415 0.94083 0.96531 1.00533 1.69919 1.29445 1.17551 1.34017 0.86102 0.78977 0.78345 0.82271 1.20265 1.20859 1.19424 1.20284 0.81984 0.87888 0.84778 1.90517 1.50357 1.18753 1.86909 1.21600 1.02368 0.99170 0.93663 1.20296 1.03770 0.97587 0.87799 1.21448 0.94789 1.02417 1.00320 1.21660 0.96970 0.88592 0.88255 1.20896 0.89535 1.04417 1.02037 1.68302 1.17670 1.21928 1.14420 1.24719 0.88275 0.96087 0.99492 1.85707 1.10500 1.64194 1.17354 1.23514 0.94988 1.06338 1.06186 1.68537 1.35363 1.11878 1.09075 1.21549 0.93424 0.91159 0.89587 1.20867 0.96308 0.99869 0.99670 0.92358 0.93162 0.93948 0.87894 0.93472 0.92279 0.90246 0.90549 0.89699 0.89505 0.89180 0.89120 0.90032 0.87837 0.89241 0.89188 0.89431 0.90241 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.15 37.16 0.38 -2.47 16 2 C 0.10 2.16 5.41 -4.04 -0.02 2.14 16 3 N -0.44 -10.74 2.50 -114.81 -0.29 -11.03 16 4 C -0.31 -8.35 8.84 -14.93 -0.13 -8.49 16 5 H 0.09 2.45 7.82 -52.49 -0.41 2.04 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.14 11.61 55.50 0.64 -22.50 16 8 Si 0.92 20.28 29.59 -169.99 -5.03 15.25 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 12 C 0.46 10.65 7.59 -10.99 -0.08 10.57 16 13 O -0.58 -15.31 15.89 5.55 0.09 -15.22 16 14 C -0.13 -2.20 4.29 -27.88 -0.12 -2.32 16 15 C -0.06 -0.86 3.90 -27.88 -0.11 -0.96 16 16 C -0.18 -2.62 5.17 -104.34 -0.54 -3.16 16 17 C 0.19 2.81 6.82 -82.26 -0.56 2.25 16 18 C -0.11 -1.37 9.84 36.01 0.35 -1.02 16 19 N -0.51 -7.80 10.34 -9.67 -0.10 -7.90 16 20 C 0.29 4.23 7.85 -90.84 -0.71 3.52 16 21 S -0.01 -0.12 22.89 -107.50 -2.46 -2.58 16 22 C -0.14 -1.16 9.62 101.05 0.97 -0.19 16 23 N -0.53 -7.46 9.08 -9.67 -0.09 -7.54 16 24 C 0.19 2.61 6.82 -82.27 -0.56 2.05 16 25 C -0.11 -1.20 9.84 36.01 0.35 -0.85 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.67 6.60 -51.93 -0.34 0.33 16 29 H 0.10 2.40 5.76 -51.93 -0.30 2.10 16 30 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 31 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.08 1.33 7.41 -51.93 -0.38 0.95 16 33 H 0.08 1.20 6.54 -51.93 -0.34 0.86 16 34 H 0.08 1.29 6.03 -51.93 -0.31 0.98 16 35 H 0.09 1.38 6.03 -51.93 -0.31 1.06 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.09 6.07 -51.93 -0.32 0.78 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.10 0.58 8.14 -51.91 -0.42 0.16 16 40 H 0.09 0.76 8.11 -51.91 -0.42 0.34 16 41 H 0.09 0.78 8.11 -51.92 -0.42 0.36 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.97 6.07 -51.93 -0.32 0.66 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -31.64 370.82 -8.83 -40.47 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.31 Total: 3.47 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.87 Total: 2.00 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.17 Total: -48.98 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.46 Total: -2.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.64 -8.83 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.312 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds