Wall clock time and date at job start Tue Mar 31 2020 13:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47247 * 2 1 4 4 C 1.37101 * 119.99642 * 264.76778 * 3 2 1 5 5 H 1.07999 * 119.99637 * 138.85522 * 4 3 2 6 6 C 1.38946 * 119.99938 * 318.85117 * 4 3 2 7 7 N 1.31406 * 120.00133 * 341.83050 * 6 4 3 8 8 Si 1.86801 * 120.00002 * 161.83108 * 6 4 3 9 9 H 1.48499 * 109.47062 * 89.99854 * 8 6 4 10 10 H 1.48502 * 109.47330 * 209.99897 * 8 6 4 11 11 H 1.48499 * 109.46991 * 329.99896 * 8 6 4 12 12 C 1.34774 * 120.00277 * 84.76429 * 3 2 1 13 13 O 1.21291 * 120.00146 * 180.02562 * 12 3 2 14 14 C 1.50702 * 120.00096 * 0.02562 * 12 3 2 15 15 C 1.52997 * 109.47149 * 179.97438 * 14 12 3 16 16 C 1.50705 * 109.46804 * 179.97438 * 15 14 12 17 17 C 1.38621 * 120.71081 * 90.00788 * 16 15 14 18 18 C 1.50704 * 120.40293 * 0.03793 * 17 16 15 19 19 N 1.32264 * 119.20113 * 180.02562 * 17 16 15 20 20 C 1.32553 * 120.73558 * 359.97438 * 19 17 16 21 21 S 1.76198 * 119.22582 * 180.02562 * 20 19 17 22 22 C 1.80991 * 100.00246 * 180.02562 * 21 20 19 23 23 N 1.32560 * 121.55441 * 0.02562 * 20 19 17 24 24 C 1.32258 * 120.73245 * 0.02562 * 23 20 19 25 25 C 1.50699 * 120.39580 * 180.02562 * 24 23 20 26 26 H 1.09002 * 109.46640 * 60.00243 * 1 2 3 27 27 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47053 * 300.00753 * 1 2 3 29 29 H 1.08992 * 109.47413 * 239.99600 * 2 1 3 30 30 H 1.09001 * 109.46948 * 119.99307 * 2 1 3 31 31 H 0.97006 * 120.00319 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46672 * 60.00055 * 14 12 3 33 33 H 1.08996 * 109.47270 * 300.00048 * 14 12 3 34 34 H 1.09003 * 109.46975 * 60.00624 * 15 14 12 35 35 H 1.08997 * 109.47669 * 299.99893 * 15 14 12 36 36 H 1.08998 * 109.46755 * 269.98243 * 18 17 16 37 37 H 1.08997 * 109.46693 * 29.98165 * 18 17 16 38 38 H 1.08997 * 109.47183 * 149.97963 * 18 17 16 39 39 H 1.09004 * 109.47174 * 179.97438 * 22 21 20 40 40 H 1.09007 * 109.47439 * 299.99794 * 22 21 20 41 41 H 1.08996 * 109.47333 * 60.00151 * 22 21 20 42 42 H 1.08994 * 109.47766 * 269.97922 * 25 24 23 43 43 H 1.09004 * 109.47368 * 29.98178 * 25 24 23 44 44 H 1.09003 * 109.46813 * 149.97805 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9913 -1.1824 5 1 2.0744 3.0217 -1.3535 6 6 3.0372 1.2840 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0501 1.9002 -3.9239 9 1 4.2057 2.8116 -4.1214 10 1 3.1661 0.7458 -4.8508 11 1 1.7886 2.6330 -4.2014 12 6 2.1426 2.0521 1.1623 13 8 2.5465 3.1958 1.1622 14 6 1.7797 1.3813 2.4620 15 6 2.0116 2.3539 3.6201 16 6 1.6481 1.6832 4.9198 17 6 2.5962 0.9722 5.6390 18 6 4.0108 0.8586 5.1319 19 7 2.2444 0.3950 6.7758 20 6 1.0023 0.4912 7.2285 21 16 0.5773 -0.2930 8.7480 22 6 -1.1720 0.1585 8.8563 23 7 0.0723 1.1635 6.5650 24 6 0.3583 1.7631 5.4213 25 6 -0.7047 2.5258 4.6735 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 4.1600 -0.3120 -2.5278 32 1 2.4019 0.4970 2.6006 33 1 0.7305 1.0872 2.4386 34 1 1.3898 3.2384 3.4818 35 1 3.0610 2.6475 3.6435 36 1 4.0996 -0.0234 4.4977 37 1 4.2622 1.7482 4.5544 38 1 4.6936 0.7690 5.9767 39 1 -1.5999 -0.2609 9.7669 40 1 -1.2665 1.2443 8.8766 41 1 -1.7034 -0.2363 7.9904 42 1 -1.2143 1.8553 3.9816 43 1 -1.4259 2.9332 5.3821 44 1 -0.2429 3.3408 4.1161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:59 Heat of formation + Delta-G solvation = -19.817464 kcal Electronic energy + Delta-G solvation = -25347.157979 eV Core-core repulsion = 21810.823907 eV Total energy + Delta-G solvation = -3536.334072 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24833 -40.42169 -37.04081 -36.16057 -35.94114 -34.02877 -32.00638 -31.11343 -30.71489 -29.58715 -28.74902 -27.36523 -25.87672 -23.97575 -23.07669 -22.75387 -20.49167 -19.14090 -18.71883 -18.65166 -17.79489 -17.02487 -16.58391 -16.19371 -15.98445 -15.92404 -15.17981 -14.81332 -14.66248 -14.57341 -14.50614 -14.40538 -14.28953 -13.95698 -13.68987 -13.56484 -13.55385 -13.37663 -13.33835 -13.08796 -12.97019 -12.81113 -12.62645 -12.30197 -12.11544 -12.01133 -11.95601 -11.68832 -11.46659 -11.33646 -10.87582 -10.71416 -10.35524 -10.26824 -9.36141 -8.77450 -8.31268 -6.07256 -0.33544 -0.03616 0.19184 1.19884 1.38826 1.42477 1.54219 2.10315 2.31314 2.46853 2.97214 3.04361 3.09631 3.34174 3.50948 3.73827 3.76567 4.13419 4.25033 4.28546 4.33430 4.33969 4.36611 4.39485 4.57422 4.59372 4.63379 4.64979 4.69306 4.73809 4.81448 4.88129 4.95849 5.04386 5.10044 5.11254 5.19243 5.31479 5.45948 5.48404 5.56215 5.88815 6.27241 6.58587 6.79284 7.22619 7.51778 8.12266 8.72213 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.002837 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.686306 B = 9868.824716 C =10081.976825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.103 3.897 3 N -0.456 5.456 4 C -0.339 4.339 5 H 0.062 0.938 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.977 3.023 9 H -0.280 1.280 10 H -0.270 1.270 11 H -0.266 1.266 12 C 0.453 3.547 13 O -0.624 6.624 14 C -0.111 4.111 15 C -0.043 4.043 16 C -0.192 4.192 17 C 0.186 3.814 18 C -0.110 4.110 19 N -0.527 5.527 20 C 0.275 3.725 21 S -0.013 6.013 22 C -0.132 4.132 23 N -0.532 5.532 24 C 0.189 3.811 25 C -0.108 4.108 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.272 0.728 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.615 -3.240 16.701 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.175 5.175 4 C -0.467 4.467 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.530 5.530 8 Si 0.801 3.199 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.190 1.190 12 C 0.243 3.757 13 O -0.510 6.510 14 C -0.151 4.151 15 C -0.082 4.082 16 C -0.200 4.200 17 C 0.038 3.962 18 C -0.167 4.167 19 N -0.246 5.246 20 C -0.100 4.100 21 S 0.220 5.780 22 C -0.301 4.301 23 N -0.251 5.251 24 C 0.041 3.959 25 C -0.165 4.165 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.152 0.848 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.943 -3.990 18.285 20.742 hybrid contribution -0.028 1.303 -2.672 2.973 sum -8.972 -2.687 15.613 18.207 Atomic orbital electron populations 1.22113 0.95291 1.02359 1.01499 1.21519 0.93977 0.83751 1.02829 1.43733 1.56235 1.12840 1.04690 1.19319 1.36298 0.98089 0.93004 0.91976 1.26113 0.93330 0.96641 1.03790 1.69987 1.29564 1.18221 1.35186 0.85191 0.78749 0.78092 0.77859 1.20580 1.19474 1.19027 1.21175 0.80856 0.87450 0.86228 1.90481 1.52043 1.20718 1.87782 1.21469 1.03563 0.99106 0.90918 1.20103 1.03252 0.97165 0.87680 1.21291 0.95354 1.03297 1.00025 1.21957 0.97755 0.88283 0.88201 1.20925 0.88884 1.04482 1.02411 1.68374 1.18344 1.22893 1.14941 1.25338 0.88236 0.95949 1.00478 1.85718 1.13175 1.63517 1.15595 1.23611 0.92452 1.06454 1.07581 1.68640 1.35090 1.12210 1.09201 1.21985 0.93765 0.90632 0.89520 1.20944 0.95902 0.99743 0.99935 0.93834 0.90079 0.92410 0.90474 0.91931 0.91890 0.89527 0.88434 0.89727 0.90487 0.88806 0.89197 0.89068 0.84819 0.89293 0.89338 0.88324 0.88763 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 10.15 71.98 0.73 -4.31 16 2 C 0.10 4.23 5.41 86.38 0.47 4.70 16 3 N -0.46 -22.43 2.50 -635.54 -1.59 -24.02 16 4 C -0.34 -18.74 8.84 84.04 0.74 -18.00 16 5 H 0.06 3.66 7.82 -2.91 -0.02 3.64 16 6 C 0.00 0.20 4.95 84.93 0.42 0.62 16 7 N -0.89 -47.62 11.61 21.66 0.25 -47.37 16 8 Si 0.98 41.82 29.59 68.60 2.03 43.85 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 C 0.45 21.03 7.59 87.66 0.67 21.69 16 13 O -0.62 -33.68 15.89 -3.06 -0.05 -33.73 16 14 C -0.11 -3.69 4.29 29.85 0.13 -3.57 16 15 C -0.04 -1.30 3.90 29.85 0.12 -1.18 16 16 C -0.19 -5.31 5.17 -19.68 -0.10 -5.41 16 17 C 0.19 5.27 6.82 42.59 0.29 5.56 16 18 C -0.11 -2.66 9.84 71.24 0.70 -1.96 16 19 N -0.53 -15.86 10.34 -184.50 -1.91 -17.77 16 20 C 0.28 7.69 7.85 180.42 1.42 9.10 16 21 S -0.01 -0.28 22.89 -56.49 -1.29 -1.57 16 22 C -0.13 -1.84 9.62 113.37 1.09 -0.75 16 23 N -0.53 -14.10 9.08 -184.52 -1.67 -15.78 16 24 C 0.19 4.87 6.82 42.59 0.29 5.16 16 25 C -0.11 -2.13 9.84 71.24 0.70 -1.43 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 1.69 6.60 -2.39 -0.02 1.67 16 29 H 0.08 3.60 5.76 -2.39 -0.01 3.59 16 30 H 0.06 2.33 6.66 -2.39 -0.02 2.32 16 31 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 32 H 0.09 2.79 7.41 -2.39 -0.02 2.77 16 33 H 0.10 2.85 6.54 -2.39 -0.02 2.83 16 34 H 0.08 2.54 6.03 -2.39 -0.01 2.52 16 35 H 0.08 2.46 6.03 -2.39 -0.01 2.44 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.09 2.17 6.07 -2.39 -0.01 2.15 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.29 8.11 -2.39 -0.02 1.28 16 41 H 0.09 1.31 8.11 -2.40 -0.02 1.29 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.09 1.79 6.07 -2.39 -0.01 1.78 16 Total: -1.00 -69.37 370.82 4.44 -64.93 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 1.02 Total: 21.23 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 7.66 Total: 10.23 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.92 Total: -104.94 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.05 Total: -33.73 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.29 Total: -1.57 kcal Total: -69.37 4.44 -64.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.112 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds