Wall clock time and date at job start Tue Mar 31 2020 14:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38120 * 126.29530 * 2 1 4 4 C 1.47281 * 126.42820 * 0.02562 * 3 2 1 5 5 O 1.21528 * 120.00236 * 359.97438 * 4 3 2 6 6 O 1.34758 * 120.00005 * 180.02562 * 4 3 2 7 7 C 1.45205 * 117.00068 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47211 * 179.97438 * 7 6 4 9 9 O 1.21281 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00148 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00408 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47453 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99878 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99821 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00269 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46833 * 59.99933 * 16 14 12 18 18 H 1.48501 * 109.47195 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47079 * 299.99829 * 16 14 12 20 20 C 1.41346 * 107.14571 * 179.90530 * 3 2 1 21 21 N 1.30437 * 108.01163 * 0.36613 * 20 3 2 22 22 N 1.34219 * 126.29440 * 180.31385 * 2 1 3 23 23 C 1.46504 * 125.74584 * 359.96523 * 22 2 1 24 24 C 1.53003 * 109.47027 * 66.87116 * 23 22 2 25 25 C 1.52995 * 109.47419 * 186.87553 * 23 22 2 26 26 C 1.52998 * 109.46979 * 306.87307 * 23 22 2 27 27 H 1.08995 * 109.47440 * 275.20699 * 1 2 3 28 28 H 1.09003 * 109.47200 * 155.20266 * 1 2 3 29 29 H 1.09004 * 109.47227 * 35.20932 * 1 2 3 30 30 H 1.08996 * 109.47015 * 299.99896 * 7 6 4 31 31 H 1.09007 * 109.46973 * 59.99356 * 7 6 4 32 32 H 0.96999 * 120.00001 * 0.02562 * 10 8 7 33 33 H 1.09002 * 109.46912 * 299.99968 * 11 10 8 34 34 H 1.08998 * 109.46761 * 59.99789 * 11 10 8 35 35 H 0.97004 * 120.00352 * 180.02562 * 15 14 12 36 36 H 1.08000 * 125.99403 * 180.17305 * 20 3 2 37 37 H 1.09000 * 109.46838 * 65.85495 * 24 23 22 38 38 H 1.09000 * 109.46876 * 185.85034 * 24 23 22 39 39 H 1.08997 * 109.47339 * 305.85076 * 24 23 22 40 40 H 1.08999 * 109.47178 * 59.99507 * 25 23 22 41 41 H 1.08994 * 109.47296 * 179.97438 * 25 23 22 42 42 H 1.09000 * 109.46935 * 299.99930 * 25 23 22 43 43 H 1.09009 * 109.47269 * 59.99936 * 26 23 22 44 44 H 1.09005 * 109.47567 * 179.97438 * 26 23 22 45 45 H 1.09005 * 109.47369 * 300.00086 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 0.0005 5 8 0.7018 2.7873 0.0006 6 8 2.8015 3.5096 -0.0001 7 6 2.2983 4.8716 -0.0001 8 6 3.4569 5.8352 -0.0001 9 8 4.5947 5.4154 -0.0006 10 7 3.2288 7.1634 -0.0007 11 6 4.3551 8.1002 -0.0013 12 6 3.8329 9.5139 -0.0012 13 1 2.7684 9.6963 -0.0011 14 6 4.7140 10.5743 -0.0022 15 7 6.0102 10.3522 -0.0028 16 14 4.0667 12.3266 -0.0028 17 1 3.2391 12.5489 1.2101 18 1 5.2084 13.2761 -0.0033 19 1 3.2378 12.5477 -1.2150 20 6 3.6598 0.6496 0.0022 21 7 3.6339 -0.6545 -0.0045 22 7 2.3015 -1.0818 -0.0059 23 6 1.8497 -2.4754 -0.0128 24 6 1.1528 -2.7790 -1.3407 25 6 3.0548 -3.4031 0.1545 26 6 0.8697 -2.6995 1.1405 27 1 -0.3634 0.0933 1.0234 28 1 -0.3634 -0.9329 -0.4310 29 1 -0.3634 0.8397 -0.5925 30 1 1.6900 5.0342 -0.8898 31 1 1.6906 5.0345 0.8902 32 1 2.3188 7.4992 -0.0006 33 1 4.9632 7.9379 0.8887 34 1 4.9628 7.9371 -0.8913 35 1 6.6302 11.0982 -0.0032 36 1 4.5461 1.2668 0.0054 37 1 1.8773 -2.7205 -2.1529 38 1 0.7260 -3.7814 -1.3060 39 1 0.3587 -2.0516 -1.5089 40 1 3.5513 -3.1867 1.1004 41 1 2.7187 -4.4398 0.1498 42 1 3.7531 -3.2434 -0.6671 43 1 0.0110 -2.0386 1.0213 44 1 0.5331 -3.7363 1.1351 45 1 1.3661 -2.4832 2.0865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051338117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:35 Heat of formation + Delta-G solvation = -54.317640 kcal Electronic energy + Delta-G solvation = -26672.294856 eV Core-core repulsion = 22691.711873 eV Total energy + Delta-G solvation = -3980.582983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94984 -40.07787 -38.57859 -37.26555 -36.14823 -34.19993 -32.78988 -32.37790 -30.96332 -29.19701 -28.08644 -28.02780 -27.56953 -26.52025 -23.50374 -22.54155 -22.34450 -20.30273 -19.87731 -19.22404 -17.77538 -17.29042 -16.53715 -16.51551 -15.99623 -15.80900 -15.33069 -15.21899 -15.02991 -14.69893 -14.36460 -14.27664 -14.13425 -13.48642 -13.11408 -13.06990 -12.91279 -12.86061 -12.77752 -12.74492 -12.41548 -12.38022 -12.29250 -11.95641 -11.77244 -11.70427 -11.64773 -11.01056 -10.88408 -10.87653 -10.57069 -10.36520 -10.32103 -9.64863 -9.42767 -9.11580 -8.93152 -8.75061 -7.94447 -6.16955 -4.24368 1.14868 1.87445 1.94435 2.65400 3.12674 3.25355 3.26272 3.30874 3.32400 3.86027 4.10332 4.14977 4.15243 4.27685 4.36552 4.54092 4.62208 4.86320 4.92059 4.94076 5.04904 5.12514 5.14675 5.18488 5.19014 5.21221 5.25325 5.33211 5.36809 5.38411 5.41192 5.56657 5.64659 5.69233 5.75955 6.25859 6.49023 6.57890 7.26547 7.33908 7.35938 7.49461 7.63220 7.88440 7.95067 8.54580 8.74628 9.01262 9.41894 10.93100 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038275 B = 0.001943 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.373458 B =14407.896074 C =14932.282848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.284 4.284 4 C 0.545 3.455 5 O -0.525 6.525 6 O -0.325 6.325 7 C 0.052 3.948 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.707 5.707 11 C 0.252 3.748 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.108 3.892 21 N -0.297 5.297 22 N -0.349 5.349 23 C 0.177 3.823 24 C -0.167 4.167 25 C -0.142 4.142 26 C -0.171 4.171 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.393 0.607 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.201 0.799 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.692 -28.687 -0.020 31.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.034 3.966 3 C -0.296 4.296 4 C 0.391 3.609 5 O -0.416 6.416 6 O -0.239 6.239 7 C -0.026 4.026 8 C 0.283 3.717 9 O -0.411 6.411 10 N -0.358 5.358 11 C 0.131 3.869 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.080 4.080 21 N -0.115 5.115 22 N -0.129 5.129 23 C 0.095 3.905 24 C -0.225 4.225 25 C -0.200 4.200 26 C -0.229 4.229 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.225 0.775 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.218 0.782 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.290 -29.998 -0.027 32.418 hybrid contribution -1.201 2.108 0.019 2.426 sum -13.491 -27.891 -0.009 30.982 Atomic orbital electron populations 1.20932 0.86230 1.04515 1.04711 1.21349 0.94776 0.86230 0.94242 1.18996 0.93661 0.90025 1.26956 1.19965 0.83595 0.85187 0.72190 1.90786 1.17894 1.84699 1.48173 1.86598 1.38453 1.14965 1.83902 1.22820 0.96434 0.78821 1.04496 1.19906 0.89553 0.83581 0.78686 1.90704 1.23000 1.77915 1.49501 1.46353 1.12139 1.04711 1.72576 1.19161 0.83864 0.85832 0.98009 1.21178 0.93429 0.90215 1.53560 0.91816 1.24951 0.94726 0.99675 0.94647 1.69961 1.01366 1.32231 1.48630 0.86451 0.78359 0.83248 0.78702 1.20052 1.21069 1.20048 1.24326 0.97619 0.91500 0.94582 1.77245 0.95754 1.13077 1.25381 1.48831 1.04036 1.05515 1.54484 1.20862 0.96005 0.76627 0.97053 1.22396 1.01292 1.03166 0.95653 1.21901 0.96222 0.97723 1.04146 1.22461 0.99194 1.03734 0.97519 0.89125 0.90417 0.87815 0.88579 0.88584 0.77457 0.95276 0.95272 0.92334 0.78238 0.91246 0.89918 0.91207 0.91245 0.90758 0.90912 0.90760 0.89839 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 7.80 36.01 0.28 -0.53 16 2 C 0.17 1.78 6.49 -81.59 -0.53 1.25 16 3 C -0.28 -3.74 6.13 -105.08 -0.64 -4.38 16 4 C 0.54 8.15 7.95 34.41 0.27 8.43 16 5 O -0.52 -8.09 14.76 -19.29 -0.28 -8.38 16 6 O -0.32 -5.41 9.60 -47.33 -0.45 -5.86 16 7 C 0.05 0.82 5.95 36.00 0.21 1.03 16 8 C 0.50 10.17 7.91 -10.99 -0.09 10.09 16 9 O -0.53 -13.18 16.50 -14.11 -0.23 -13.41 16 10 N -0.71 -14.79 5.55 -61.47 -0.34 -15.14 16 11 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 12 C -0.55 -14.70 9.28 -34.44 -0.32 -15.02 16 13 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 16 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.11 1.37 11.87 -16.96 -0.20 1.17 16 21 N -0.30 -3.61 11.54 30.87 0.36 -3.26 16 22 N -0.35 -3.47 3.43 -44.00 -0.15 -3.62 16 23 C 0.18 1.14 1.06 -131.82 -0.14 1.00 16 24 C -0.17 -0.82 8.54 37.16 0.32 -0.50 16 25 C -0.14 -0.86 7.99 37.15 0.30 -0.57 16 26 C -0.17 -0.80 8.34 37.16 0.31 -0.49 16 27 H 0.09 0.62 7.99 -51.93 -0.41 0.20 16 28 H 0.08 0.39 4.43 -51.93 -0.23 0.16 16 29 H 0.10 0.93 6.80 -51.93 -0.35 0.58 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.20 2.35 8.06 -52.49 -0.42 1.92 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.34 5.58 -51.93 -0.29 0.05 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.07 0.31 5.05 -51.92 -0.26 0.05 16 44 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -34.89 377.37 -6.55 -41.44 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.49 Total: 2.27 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -0.35 Total: 9.75 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.60 Total: -47.25 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.97 Total: -27.65 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.89 -6.55 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051338117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.876 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds