Wall clock time and date at job start Tue Mar 31 2020 14:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35348 * 126.37789 * 2 1 4 4 C 1.41545 * 105.50037 * 180.02562 * 3 2 1 5 5 C 1.47593 * 126.52376 * 179.97438 * 4 3 2 6 6 O 1.21484 * 119.99822 * 0.02562 * 5 4 3 7 7 O 1.34727 * 119.99862 * 180.02562 * 5 4 3 8 8 C 1.45197 * 116.99771 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47326 * 180.02562 * 8 7 5 10 10 O 1.21289 * 119.99833 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00539 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00472 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47260 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00135 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99873 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47431 * 59.99474 * 17 15 13 19 19 H 1.48506 * 109.47018 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46968 * 299.99130 * 17 15 13 21 21 N 1.31854 * 106.95323 * 359.74737 * 4 3 2 22 22 N 1.28465 * 110.06462 * 0.42444 * 21 4 3 23 23 C 1.46494 * 124.88211 * 179.82205 * 22 21 4 24 24 C 1.53005 * 109.47395 * 246.10253 * 23 22 21 25 25 C 1.53004 * 109.46986 * 126.10267 * 23 22 21 26 26 C 1.52997 * 109.47403 * 6.10429 * 23 22 21 27 27 H 1.08998 * 109.47496 * 274.74147 * 1 2 3 28 28 H 1.09001 * 109.46971 * 34.74156 * 1 2 3 29 29 H 1.09001 * 109.47015 * 154.74122 * 1 2 3 30 30 H 1.07998 * 127.24834 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47071 * 299.99618 * 8 7 5 32 32 H 1.09000 * 109.47588 * 59.99821 * 8 7 5 33 33 H 0.97006 * 119.99570 * 0.02562 * 11 9 8 34 34 H 1.09006 * 109.47242 * 300.00005 * 12 11 9 35 35 H 1.09003 * 109.47481 * 59.99642 * 12 11 9 36 36 H 0.96996 * 119.99732 * 180.02562 * 16 15 13 37 37 H 1.09007 * 109.46817 * 293.90565 * 24 23 22 38 38 H 1.09000 * 109.47200 * 173.90823 * 24 23 22 39 39 H 1.08998 * 109.47084 * 53.90369 * 24 23 22 40 40 H 1.09004 * 109.46956 * 179.97438 * 25 23 22 41 41 H 1.09002 * 109.47030 * 299.99864 * 25 23 22 42 42 H 1.09000 * 109.47072 * 60.00210 * 25 23 22 43 43 H 1.09005 * 109.46733 * 300.00190 * 26 23 22 44 44 H 1.09002 * 109.47271 * 59.99733 * 26 23 22 45 45 H 1.08995 * 109.47282 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0897 0.0000 4 6 3.6323 0.5853 -0.0006 5 6 4.8757 1.3804 -0.0014 6 8 4.8206 2.5940 -0.0011 7 8 6.0718 0.7604 -0.0024 8 6 7.2524 1.6056 -0.0026 9 6 8.4879 0.7428 -0.0044 10 8 8.3837 -0.4656 -0.0050 11 7 9.7087 1.3138 -0.0054 12 6 10.9098 0.4751 -0.0077 13 6 12.1351 1.3523 -0.0077 14 1 12.0298 2.4271 -0.0066 15 6 13.3908 0.7827 -0.0103 16 7 13.5191 -0.5262 -0.0123 17 14 14.9096 1.8701 -0.0111 18 1 14.9064 2.7259 1.2024 19 1 16.1272 1.0198 -0.0134 20 1 14.9029 2.7289 -1.2225 21 7 3.5420 -0.7302 0.0046 22 7 2.3080 -1.0873 -0.0005 23 6 1.8374 -2.4746 -0.0008 24 6 1.1262 -2.7717 -1.3225 25 6 0.8632 -2.6828 1.1605 26 6 3.0310 -3.4182 0.1594 27 1 -0.3634 0.0849 1.0241 28 1 -0.3633 0.8445 -0.5856 29 1 -0.3633 -0.9294 -0.4385 30 1 2.0053 2.1259 0.0004 31 1 7.2482 2.2354 -0.8922 32 1 7.2492 2.2344 0.8878 33 1 9.7920 2.2803 -0.0045 34 1 10.9146 -0.1552 0.8816 35 1 10.9124 -0.1534 -0.8983 36 1 14.4025 -0.9268 -0.0137 37 1 0.2155 -2.1760 -1.3870 38 1 0.8716 -3.8306 -1.3681 39 1 1.7846 -2.5201 -2.1539 40 1 0.5127 -3.7150 1.1601 41 1 1.3699 -2.4712 2.1022 42 1 0.0128 -2.0106 1.0464 43 1 3.7250 -3.2698 -0.6680 44 1 3.5377 -3.2066 1.1010 45 1 2.6808 -4.4504 0.1587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051632675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:38 Heat of formation + Delta-G solvation = -46.967077 kcal Electronic energy + Delta-G solvation = -26731.115855 eV Core-core repulsion = 22750.851616 eV Total energy + Delta-G solvation = -3980.264239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.11231 -40.22408 -38.59159 -37.33457 -36.18347 -34.18153 -33.23968 -32.36309 -31.24753 -29.16155 -28.03988 -27.82555 -27.40455 -26.70326 -24.64267 -22.51909 -21.83791 -20.67249 -19.85365 -19.48730 -17.56673 -17.20123 -16.90465 -16.72713 -16.19335 -16.12896 -15.40384 -15.06365 -14.96048 -14.64020 -14.41263 -14.26436 -14.03041 -13.54056 -13.31989 -13.21418 -12.89079 -12.86617 -12.79869 -12.71532 -12.40349 -12.29562 -12.23549 -11.94188 -11.71944 -11.64657 -11.44831 -11.00270 -10.87361 -10.84375 -10.73151 -10.59012 -10.31265 -9.41603 -9.38171 -9.16431 -9.09389 -8.73832 -7.92658 -6.15996 -4.23263 1.28224 1.79538 1.99271 2.57375 3.11286 3.26607 3.27512 3.31471 3.33130 3.85249 4.05679 4.18797 4.23388 4.31227 4.35710 4.43686 4.63926 4.90422 4.96318 5.01225 5.09185 5.10551 5.13221 5.19902 5.25495 5.30054 5.31441 5.32808 5.37623 5.39807 5.43476 5.55610 5.61587 5.68200 5.91054 6.14121 6.37141 6.55716 7.27860 7.37395 7.50808 7.57914 7.66114 7.90903 7.96136 8.56180 8.76085 9.03229 9.42883 10.94128 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.002129 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.325578 B =13151.576596 C =14085.930496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.009 3.991 3 C -0.174 4.174 4 C -0.006 4.006 5 C 0.556 3.444 6 O -0.505 6.505 7 O -0.314 6.314 8 C 0.048 3.952 9 C 0.500 3.500 10 O -0.531 6.531 11 N -0.708 5.708 12 C 0.252 3.748 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.219 5.219 22 N -0.265 5.265 23 C 0.166 3.834 24 C -0.164 4.164 25 C -0.168 4.168 26 C -0.149 4.149 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.393 0.607 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.148 -1.766 0.004 31.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.164 4.164 5 C 0.398 3.602 6 O -0.391 6.391 7 O -0.227 6.227 8 C -0.030 4.030 9 C 0.283 3.717 10 O -0.408 6.408 11 N -0.358 5.358 12 C 0.131 3.869 13 C -0.583 4.583 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.055 5.055 22 N -0.056 5.056 23 C 0.085 3.915 24 C -0.222 4.222 25 C -0.226 4.226 26 C -0.207 4.207 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.181 0.819 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.226 0.774 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -30.391 -3.535 0.007 30.596 hybrid contribution 0.627 1.920 0.005 2.020 sum -29.764 -1.615 0.012 29.808 Atomic orbital electron populations 1.20597 0.86821 1.03894 1.03452 1.21308 0.95506 0.86495 1.08127 1.21437 0.89716 0.99720 1.09255 1.20632 0.92110 0.89917 1.13701 1.19625 0.82680 0.85318 0.72560 1.90844 1.87688 1.13930 1.46664 1.86705 1.13387 1.39522 1.83098 1.22906 0.82590 0.92803 1.04661 1.19872 0.84300 0.88781 0.78781 1.90720 1.86596 1.14205 1.49284 1.46346 1.05864 1.10916 1.72680 1.19159 0.79179 0.90517 0.97998 1.21181 0.90479 0.93152 1.53491 0.91803 1.24958 0.99231 0.95180 0.94659 1.69968 1.24142 1.09438 1.48689 0.86445 0.81515 0.80056 0.78714 1.20042 1.21080 1.20038 1.73807 1.01395 1.14312 1.15984 1.45963 1.02594 1.07170 1.49913 1.21113 0.96330 0.76478 0.97628 1.22362 1.00973 1.03445 0.95430 1.22416 0.99011 1.03880 0.97258 1.21984 0.96232 0.97584 1.04870 0.90178 0.89663 0.90522 0.81861 0.88390 0.88383 0.77447 0.95291 0.95289 0.92352 0.91124 0.89672 0.91155 0.89659 0.91230 0.90724 0.90462 0.90874 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 8.54 36.00 0.31 -0.12 16 2 C 0.01 0.08 6.42 -82.21 -0.53 -0.45 16 3 C -0.17 -2.01 10.73 -39.35 -0.42 -2.43 16 4 C -0.01 -0.10 7.17 -82.78 -0.59 -0.69 16 5 C 0.56 9.28 7.97 34.55 0.28 9.56 16 6 O -0.50 -8.66 16.72 -19.25 -0.32 -8.98 16 7 O -0.31 -5.79 9.77 -47.25 -0.46 -6.26 16 8 C 0.05 0.80 5.95 36.00 0.21 1.02 16 9 C 0.50 10.62 7.91 -10.99 -0.09 10.53 16 10 O -0.53 -13.70 16.50 -14.11 -0.23 -13.94 16 11 N -0.71 -15.22 5.55 -61.47 -0.34 -15.56 16 12 C 0.25 6.75 5.43 -5.20 -0.03 6.73 16 13 C -0.54 -14.87 9.28 -34.44 -0.32 -15.18 16 14 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 17 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 N -0.22 -3.19 10.92 33.41 0.36 -2.82 16 22 N -0.26 -2.82 3.18 -44.51 -0.14 -2.96 16 23 C 0.17 1.21 1.06 -131.82 -0.14 1.07 16 24 C -0.16 -0.86 8.48 37.16 0.32 -0.55 16 25 C -0.17 -0.82 8.34 37.16 0.31 -0.51 16 26 C -0.15 -1.25 7.91 37.16 0.29 -0.95 16 27 H 0.08 0.29 7.93 -51.93 -0.41 -0.12 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.25 4.28 -51.93 -0.22 0.03 16 30 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 0.28 5.57 -51.92 -0.29 -0.01 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.27 4.99 -51.93 -0.26 0.01 16 43 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -36.40 380.08 -6.74 -43.14 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.55 Total: 1.48 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -0.50 Total: 9.70 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.62 Total: -46.84 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.02 Total: -29.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.40 -6.74 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051632675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.832 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds