Wall clock time and date at job start Tue Mar 31 2020 14:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35348 * 126.37789 * 2 1 4 4 C 1.41545 * 105.50037 * 180.02562 * 3 2 1 5 5 C 1.47593 * 126.52376 * 179.97438 * 4 3 2 6 6 O 1.21484 * 119.99822 * 0.02562 * 5 4 3 7 7 O 1.34727 * 119.99862 * 180.02562 * 5 4 3 8 8 C 1.45197 * 116.99771 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47326 * 180.02562 * 8 7 5 10 10 O 1.21289 * 119.99833 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00539 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00472 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47260 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00135 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99873 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47431 * 59.99474 * 17 15 13 19 19 H 1.48506 * 109.47018 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46968 * 299.99130 * 17 15 13 21 21 N 1.31854 * 106.95323 * 359.74737 * 4 3 2 22 22 N 1.28465 * 110.06462 * 0.42444 * 21 4 3 23 23 C 1.46494 * 124.88211 * 179.82205 * 22 21 4 24 24 C 1.53005 * 109.47395 * 246.10253 * 23 22 21 25 25 C 1.53004 * 109.46986 * 126.10267 * 23 22 21 26 26 C 1.52997 * 109.47403 * 6.10429 * 23 22 21 27 27 H 1.08998 * 109.47496 * 274.74147 * 1 2 3 28 28 H 1.09001 * 109.46971 * 34.74156 * 1 2 3 29 29 H 1.09001 * 109.47015 * 154.74122 * 1 2 3 30 30 H 1.07998 * 127.24834 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47071 * 299.99618 * 8 7 5 32 32 H 1.09000 * 109.47588 * 59.99821 * 8 7 5 33 33 H 0.97006 * 119.99570 * 0.02562 * 11 9 8 34 34 H 1.09006 * 109.47242 * 300.00005 * 12 11 9 35 35 H 1.09003 * 109.47481 * 59.99642 * 12 11 9 36 36 H 0.96996 * 119.99732 * 180.02562 * 16 15 13 37 37 H 1.09007 * 109.46817 * 293.90565 * 24 23 22 38 38 H 1.09000 * 109.47200 * 173.90823 * 24 23 22 39 39 H 1.08998 * 109.47084 * 53.90369 * 24 23 22 40 40 H 1.09004 * 109.46956 * 179.97438 * 25 23 22 41 41 H 1.09002 * 109.47030 * 299.99864 * 25 23 22 42 42 H 1.09000 * 109.47072 * 60.00210 * 25 23 22 43 43 H 1.09005 * 109.46733 * 300.00190 * 26 23 22 44 44 H 1.09002 * 109.47271 * 59.99733 * 26 23 22 45 45 H 1.08995 * 109.47282 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0897 0.0000 4 6 3.6323 0.5853 -0.0006 5 6 4.8757 1.3804 -0.0014 6 8 4.8206 2.5940 -0.0011 7 8 6.0718 0.7604 -0.0024 8 6 7.2524 1.6056 -0.0026 9 6 8.4879 0.7428 -0.0044 10 8 8.3837 -0.4656 -0.0050 11 7 9.7087 1.3138 -0.0054 12 6 10.9098 0.4751 -0.0077 13 6 12.1351 1.3523 -0.0077 14 1 12.0298 2.4271 -0.0066 15 6 13.3908 0.7827 -0.0103 16 7 13.5191 -0.5262 -0.0123 17 14 14.9096 1.8701 -0.0111 18 1 14.9064 2.7259 1.2024 19 1 16.1272 1.0198 -0.0134 20 1 14.9029 2.7289 -1.2225 21 7 3.5420 -0.7302 0.0046 22 7 2.3080 -1.0873 -0.0005 23 6 1.8374 -2.4746 -0.0008 24 6 1.1262 -2.7717 -1.3225 25 6 0.8632 -2.6828 1.1605 26 6 3.0310 -3.4182 0.1594 27 1 -0.3634 0.0849 1.0241 28 1 -0.3633 0.8445 -0.5856 29 1 -0.3633 -0.9294 -0.4385 30 1 2.0053 2.1259 0.0004 31 1 7.2482 2.2354 -0.8922 32 1 7.2492 2.2344 0.8878 33 1 9.7920 2.2803 -0.0045 34 1 10.9146 -0.1552 0.8816 35 1 10.9124 -0.1534 -0.8983 36 1 14.4025 -0.9268 -0.0137 37 1 0.2155 -2.1760 -1.3870 38 1 0.8716 -3.8306 -1.3681 39 1 1.7846 -2.5201 -2.1539 40 1 0.5127 -3.7150 1.1601 41 1 1.3699 -2.4712 2.1022 42 1 0.0128 -2.0106 1.0464 43 1 3.7250 -3.2698 -0.6680 44 1 3.5377 -3.2066 1.1010 45 1 2.6808 -4.4504 0.1587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051632675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:38 Heat of formation + Delta-G solvation = -72.224091 kcal Electronic energy + Delta-G solvation = -26732.211081 eV Core-core repulsion = 22750.851616 eV Total energy + Delta-G solvation = -3981.359465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.96148 -41.59709 -40.34972 -38.00851 -37.52961 -36.20743 -34.43646 -33.90805 -32.16044 -30.79676 -28.73869 -28.42988 -28.33859 -27.97118 -25.82784 -24.49269 -22.64034 -21.76753 -21.68468 -20.35554 -19.25454 -18.40530 -18.05308 -17.96276 -17.50070 -17.08683 -17.07403 -16.87801 -16.14597 -15.99838 -15.54135 -15.08885 -14.83373 -14.67509 -14.53510 -14.16290 -14.06420 -13.86511 -13.79972 -13.61270 -13.59704 -13.24402 -13.18976 -12.96898 -12.87225 -12.70121 -12.68814 -12.26429 -12.24835 -12.10129 -12.06874 -11.97062 -11.53906 -11.51934 -10.94991 -10.81779 -10.26016 -9.97465 -9.95864 -8.30238 -6.47346 0.15689 1.02021 1.02588 1.43221 1.47539 1.51724 1.51741 1.56366 1.98568 2.32825 2.53612 3.04584 3.16663 3.56830 3.63550 3.67455 3.69364 3.79207 3.93658 4.00448 4.01783 4.35273 4.46967 4.54783 4.57113 4.64145 4.66176 4.72424 4.77916 4.79818 4.94602 4.98889 5.04315 5.10357 5.17112 5.19457 5.19807 5.22607 5.36647 5.39716 5.61489 5.80266 5.87546 6.40829 6.60969 6.75182 6.90106 7.18694 7.33690 8.81824 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.002129 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.325578 B =13151.576596 C =14085.930496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.026 3.974 3 C -0.187 4.187 4 C -0.042 4.042 5 C 0.557 3.443 6 O -0.514 6.514 7 O -0.340 6.340 8 C 0.058 3.942 9 C 0.500 3.500 10 O -0.584 6.584 11 N -0.697 5.697 12 C 0.267 3.733 13 C -0.558 4.558 14 H 0.087 0.913 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.988 3.012 18 H -0.262 1.262 19 H -0.286 1.286 20 H -0.262 1.262 21 N -0.260 5.260 22 N -0.259 5.259 23 C 0.154 3.846 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.149 4.149 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.178 0.822 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.413 0.587 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.269 0.731 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.047 0.953 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.745 -0.237 0.002 33.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.215 4.215 4 C -0.197 4.197 5 C 0.401 3.599 6 O -0.402 6.402 7 O -0.254 6.254 8 C -0.018 4.018 9 C 0.286 3.714 10 O -0.464 6.464 11 N -0.349 5.349 12 C 0.144 3.856 13 C -0.596 4.596 14 H 0.105 0.895 15 C -0.197 4.197 16 N -0.569 5.569 17 Si 0.810 3.190 18 H -0.186 1.186 19 H -0.211 1.211 20 H -0.186 1.186 21 N -0.098 5.098 22 N -0.051 5.051 23 C 0.074 3.926 24 C -0.217 4.217 25 C -0.221 4.221 26 C -0.207 4.207 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.195 0.805 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.250 0.750 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -33.015 -1.952 0.005 33.073 hybrid contribution 1.314 1.324 0.007 1.865 sum -31.701 -0.628 0.011 31.707 Atomic orbital electron populations 1.20843 0.82960 1.05745 1.05216 1.22025 0.97502 0.85147 1.05169 1.21721 0.88514 1.01189 1.10027 1.20736 0.92438 0.90486 1.16028 1.19932 0.82502 0.85503 0.72011 1.90810 1.87740 1.14125 1.47484 1.86695 1.14378 1.40774 1.83601 1.22842 0.80057 0.91470 1.07473 1.20646 0.85405 0.88558 0.76832 1.90696 1.87427 1.16885 1.51402 1.46018 1.04790 1.11521 1.72528 1.18635 0.81749 0.90649 0.94519 1.21579 0.90535 0.94220 1.53219 0.89488 1.26095 1.03165 0.96625 0.93780 1.70137 1.25172 1.11842 1.49746 0.85165 0.76374 0.77888 0.79534 1.18616 1.21107 1.18608 1.73740 1.03876 1.14514 1.17703 1.46427 1.01737 1.08814 1.48149 1.21573 0.96320 0.74555 1.00164 1.22384 1.00849 1.05531 0.92986 1.22447 0.98513 1.06123 0.94977 1.21988 0.96441 0.99950 1.02273 0.88258 0.88003 0.88527 0.80487 0.85420 0.85411 0.75005 0.99068 0.99062 0.92180 0.89058 0.87097 0.93414 0.86977 0.92924 0.88767 0.93348 0.93290 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 8.54 71.24 0.61 0.11 16 2 C 0.03 0.43 6.42 41.40 0.27 0.70 16 3 C -0.19 -4.22 10.73 22.42 0.24 -3.98 16 4 C -0.04 -1.29 7.17 42.43 0.30 -0.98 16 5 C 0.56 19.11 7.97 70.29 0.56 19.67 16 6 O -0.51 -17.59 16.72 19.89 0.33 -17.26 16 7 O -0.34 -13.02 9.77 -49.98 -0.49 -13.51 16 8 C 0.06 1.94 5.95 71.23 0.42 2.36 16 9 C 0.50 21.92 7.91 87.66 0.69 22.62 16 10 O -0.58 -31.95 16.50 15.74 0.26 -31.69 16 11 N -0.70 -30.55 5.55 -466.78 -2.59 -33.14 16 12 C 0.27 14.98 5.43 85.63 0.46 15.44 16 13 C -0.56 -30.66 9.28 25.60 0.24 -30.42 16 14 H 0.09 4.28 7.60 -2.91 -0.02 4.25 16 15 C 0.00 0.17 5.46 84.65 0.46 0.64 16 16 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 17 Si 0.99 42.72 29.54 68.60 2.03 44.75 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 21 N -0.26 -7.97 10.92 -48.21 -0.53 -8.50 16 22 N -0.26 -5.44 3.18 -294.72 -0.94 -6.37 16 23 C 0.15 2.05 1.06 3.61 0.00 2.06 16 24 C -0.16 -1.30 8.48 71.98 0.61 -0.69 16 25 C -0.16 -1.14 8.34 71.98 0.60 -0.54 16 26 C -0.15 -2.57 7.91 71.98 0.57 -2.00 16 27 H 0.10 0.27 7.93 -2.39 -0.02 0.26 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.10 0.17 4.28 -2.39 -0.01 0.16 16 30 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.13 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.13 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.41 14.57 8.32 -92.70 -0.77 13.80 16 34 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.09 0.36 5.57 -2.38 -0.01 0.35 16 38 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 41 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.29 4.99 -2.39 -0.01 0.28 16 43 H 0.05 1.10 8.08 -2.38 -0.02 1.08 16 44 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -85.45 380.08 4.65 -80.79 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.25 Total: 16.44 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 6.04 Total: 24.97 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.77 Total: -104.50 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: 0.10 Total: -62.45 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -85.45 4.65 -80.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051632675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.569 kcal (2) G-P(sol) polarization free energy of solvation -85.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds