Wall clock time and date at job start Tue Mar 31 2020 13:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42908 * 109.47187 * 2 1 4 4 C 1.42900 * 113.99726 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46635 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47420 * 65.00111 * 5 4 3 7 7 C 1.42903 * 114.00068 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47139 * 329.99818 * 7 6 5 9 9 C 1.52999 * 109.46983 * 90.00132 * 7 6 5 10 10 C 1.50703 * 109.46882 * 209.99773 * 7 6 5 11 11 O 1.21299 * 119.99894 * 355.00312 * 10 7 6 12 12 N 1.34779 * 120.00131 * 174.99642 * 10 7 6 13 13 C 1.39991 * 120.00203 * 175.48765 * 12 10 7 14 14 C 1.38918 * 120.00096 * 215.12702 * 13 12 10 15 15 C 1.38000 * 119.99557 * 180.02562 * 14 13 12 16 16 C 1.38904 * 120.00455 * 0.02562 * 15 14 13 17 17 O 1.35780 * 119.99879 * 180.02562 * 16 15 14 18 18 C 1.34810 * 117.00140 * 354.65287 * 17 16 15 19 19 H 1.08003 * 120.00095 * 5.03829 * 18 17 16 20 20 C 1.38628 * 120.00440 * 185.03547 * 18 17 16 21 21 N 1.31578 * 119.99480 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00545 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46761 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47287 * 120.00220 * 22 20 18 25 25 H 1.48508 * 109.47363 * 240.00488 * 22 20 18 26 26 C 1.38905 * 120.00289 * 0.26782 * 16 15 14 27 27 C 1.38006 * 119.99742 * 359.45901 * 26 16 15 28 28 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46909 * 299.99515 * 1 2 3 30 30 H 1.09004 * 109.47218 * 59.99723 * 1 2 3 31 31 H 1.09004 * 109.47347 * 240.00318 * 2 1 3 32 32 H 1.08992 * 109.47588 * 120.00292 * 2 1 3 33 33 H 1.08993 * 109.47052 * 60.00531 * 4 3 2 34 34 H 1.08998 * 109.47126 * 300.00296 * 4 3 2 35 35 H 1.09003 * 109.47166 * 305.00073 * 5 4 3 36 36 H 1.09005 * 109.46817 * 184.99882 * 5 4 3 37 37 H 1.08997 * 109.47439 * 59.99870 * 9 7 6 38 38 H 1.09007 * 109.46517 * 180.02562 * 9 7 6 39 39 H 1.08996 * 109.47106 * 299.99527 * 9 7 6 40 40 H 0.97000 * 119.99494 * 355.49047 * 12 10 7 41 41 H 1.07997 * 120.00252 * 359.97438 * 14 13 12 42 42 H 1.08007 * 119.99794 * 179.97438 * 15 14 13 43 43 H 0.97008 * 119.99633 * 179.97438 * 21 20 18 44 44 H 1.08002 * 119.99944 * 179.72463 * 26 16 15 45 45 H 1.08004 * 119.99929 * 180.26863 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7194 4.9335 1.3244 8 1 4.6310 5.1383 0.7630 9 6 2.5702 5.7660 0.7524 10 6 3.9293 5.2948 2.7723 11 8 3.7272 4.4702 3.6386 12 7 4.3417 6.5342 3.1046 13 6 4.4459 6.8994 4.4521 14 6 4.1470 8.1980 4.8449 15 6 4.2502 8.5580 6.1731 16 6 4.6536 7.6223 7.1171 17 8 4.7547 7.9765 8.4240 18 6 4.5574 9.2762 8.7228 19 1 4.2508 9.9672 7.9515 20 6 4.7479 9.7259 10.0202 21 7 5.1219 8.8841 10.9599 22 14 4.4752 11.5269 10.4342 23 1 4.0620 12.2590 9.2101 24 1 3.4104 11.6426 11.4627 25 1 5.7359 12.1106 10.9590 26 6 4.9584 6.3255 6.7235 27 6 4.8498 5.9638 5.3961 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8332 0.9768 -0.8908 34 1 3.8340 0.9764 0.8891 35 1 3.3491 3.4419 -0.8412 36 1 4.9082 3.0255 -0.0899 37 1 1.6587 5.5612 1.3138 38 1 2.8152 6.8253 0.8303 39 1 2.4184 5.5046 -0.2948 40 1 4.5663 7.1731 2.4102 41 1 3.8345 8.9258 4.1108 42 1 4.0182 9.5677 6.4785 43 1 5.2556 9.1988 11.8677 44 1 5.2763 5.5992 7.4569 45 1 5.0826 4.9543 5.0907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057423597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:28 Heat of formation + Delta-G solvation = -125.071543 kcal Electronic energy + Delta-G solvation = -26282.307305 eV Core-core repulsion = 22266.363451 eV Total energy + Delta-G solvation = -4015.943854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.31332 -38.97923 -38.46590 -37.52408 -36.30619 -34.05590 -32.58694 -32.15002 -31.30469 -30.19900 -29.14935 -27.84829 -25.43498 -24.47422 -23.07938 -22.83692 -22.23601 -21.41992 -20.11120 -18.08056 -17.78847 -17.35220 -17.09078 -17.02906 -16.25650 -15.86417 -15.53389 -15.05970 -14.71219 -14.54848 -14.39093 -14.05490 -13.77644 -13.54255 -13.48453 -13.03100 -12.90624 -12.81422 -12.62911 -12.55652 -12.38154 -11.94819 -11.79903 -11.71310 -11.55812 -11.51197 -11.47921 -11.18104 -11.04173 -10.71237 -10.43794 -10.07743 -9.90088 -9.61056 -9.43351 -9.19527 -8.70852 -8.18836 -6.92456 -6.43316 -4.01382 2.10017 2.22482 2.72903 2.92390 3.14106 3.14426 3.20037 3.34587 3.74160 3.97807 4.48342 4.58300 4.67587 4.71258 4.74111 4.77263 4.85725 4.91815 5.03035 5.05355 5.10097 5.11469 5.26307 5.34066 5.39751 5.43380 5.49074 5.57024 5.62030 5.80491 5.83506 5.88268 6.15543 6.23182 6.29010 6.76247 6.83241 6.86784 6.92770 7.03486 7.17594 7.23994 7.42778 7.71863 7.80132 8.01263 8.38405 9.02058 9.72892 10.74727 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.001959 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.500472 B =14290.540560 C =14682.390350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.061 3.939 6 O -0.346 6.346 7 C 0.074 3.926 8 H 0.084 0.916 9 C -0.169 4.169 10 C 0.505 3.495 11 O -0.504 6.504 12 N -0.659 5.659 13 C 0.035 3.965 14 C -0.089 4.089 15 C -0.220 4.220 16 C 0.148 3.852 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.179 4.179 27 C -0.067 4.067 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.269 0.731 44 H 0.121 0.879 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 -9.847 -25.839 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.016 4.016 6 O -0.264 6.264 7 C 0.012 3.988 8 H 0.102 0.898 9 C -0.226 4.226 10 C 0.290 3.710 11 O -0.377 6.377 12 N -0.305 5.305 13 C -0.057 4.057 14 C -0.109 4.109 15 C -0.240 4.240 16 C 0.094 3.906 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.199 4.199 27 C -0.087 4.087 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.235 0.765 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.139 0.861 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.112 -10.548 -24.626 26.970 hybrid contribution 0.259 1.197 -0.435 1.300 sum -2.853 -9.351 -25.061 26.901 Atomic orbital electron populations 1.21736 0.93692 1.02156 1.03295 1.22459 0.95776 0.83840 0.99910 1.87972 1.20386 1.26243 1.95381 1.22482 0.82380 0.95346 1.00958 1.22639 0.98268 0.92877 0.87790 1.88149 1.80113 1.20657 1.37502 1.21852 0.98933 0.84120 0.93888 0.89827 1.22213 0.99141 0.99463 1.01832 1.20388 0.77530 0.82503 0.90529 1.90731 1.48465 1.48304 1.50208 1.43110 1.66557 1.13987 1.06865 1.17234 1.10885 0.94839 0.82728 1.20474 1.00300 0.94390 0.95752 1.20972 1.09657 1.01031 0.92337 1.19422 0.92967 0.93049 0.85201 1.83992 1.77276 1.28330 1.18416 1.21364 1.47533 0.82227 0.95615 0.89013 1.25297 0.96519 1.00169 0.94640 1.70065 1.42952 1.34688 1.01965 0.85642 0.78287 0.80484 0.78955 1.19124 1.20175 1.20168 1.20163 1.09079 0.95022 0.95600 1.20754 0.97363 0.98894 0.91716 0.91178 0.91566 0.91983 0.93670 0.93263 0.91839 0.92123 0.92257 0.91626 0.90839 0.90977 0.91273 0.76480 0.87136 0.85085 0.92080 0.86106 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.15 10.31 -40.09 -0.41 -4.56 16 4 C 0.07 0.56 6.32 37.16 0.23 0.80 16 5 C 0.06 0.53 6.13 37.16 0.23 0.75 16 6 O -0.35 -4.45 9.49 -59.70 -0.57 -5.01 16 7 C 0.07 0.79 3.13 -27.88 -0.09 0.70 16 8 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 9 C -0.17 -1.47 9.48 37.16 0.35 -1.12 16 10 C 0.51 7.54 7.02 -10.98 -0.08 7.46 16 11 O -0.50 -9.99 13.95 -14.32 -0.20 -10.19 16 12 N -0.66 -9.04 5.30 -9.82 -0.05 -9.10 16 13 C 0.04 0.63 6.30 -83.63 -0.53 0.11 16 14 C -0.09 -1.60 9.96 -39.42 -0.39 -2.00 16 15 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 16 C 0.15 3.64 6.65 -39.09 -0.26 3.38 16 17 O -0.18 -5.11 9.75 0.01 0.00 -5.11 16 18 C -0.39 -10.95 9.48 30.88 0.29 -10.66 16 19 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 21 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 22 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 C -0.18 -4.03 9.98 -39.42 -0.39 -4.42 16 27 C -0.07 -1.37 8.69 -39.42 -0.34 -1.71 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.49 8.08 -51.92 -0.42 0.07 16 39 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 40 H 0.40 3.82 8.76 -40.82 -0.36 3.47 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.13 2.79 5.63 -52.48 -0.30 2.50 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 45 H 0.13 2.58 6.23 -52.48 -0.33 2.26 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -35.83 383.16 -7.20 -43.03 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.68 Total: 5.24 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.80 Total: -10.89 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.71 Total: -33.79 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.18 Total: -24.87 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.83 -7.20 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057423597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.042 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds