Wall clock time and date at job start Tue Mar 31 2020 13:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47122 * 2 1 4 4 C 1.42903 * 114.00044 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46739 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47523 * 65.00129 * 5 4 3 7 7 C 1.42895 * 114.00195 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47541 * 29.99101 * 7 6 5 9 9 C 1.53007 * 109.46816 * 269.99744 * 7 6 5 10 10 C 1.50701 * 109.47478 * 149.99676 * 7 6 5 11 11 O 1.21289 * 119.99938 * 5.00004 * 10 7 6 12 12 N 1.34776 * 120.00166 * 184.71845 * 10 7 6 13 13 C 1.39988 * 119.99898 * 174.90956 * 12 10 7 14 14 C 1.38918 * 120.00472 * 326.11397 * 13 12 10 15 15 C 1.37998 * 120.00049 * 179.78992 * 14 13 12 16 16 C 1.38911 * 120.00153 * 0.46374 * 15 14 13 17 17 O 1.35774 * 119.99925 * 179.77000 * 16 15 14 18 18 C 1.34815 * 116.99953 * 185.95073 * 17 16 15 19 19 H 1.08000 * 119.99920 * 5.40051 * 18 17 16 20 20 C 1.38630 * 120.00230 * 185.40863 * 18 17 16 21 21 N 1.31579 * 119.99657 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00501 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47006 * 89.99658 * 22 20 18 24 24 H 1.48491 * 109.47604 * 209.99918 * 22 20 18 25 25 H 1.48502 * 109.46771 * 330.00272 * 22 20 18 26 26 C 1.38904 * 120.00063 * 359.78999 * 16 15 14 27 27 C 1.38000 * 120.00572 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47312 * 300.00287 * 1 2 3 30 30 H 1.09003 * 109.47194 * 60.00655 * 1 2 3 31 31 H 1.09003 * 109.47312 * 239.99713 * 2 1 3 32 32 H 1.09003 * 109.47194 * 119.99345 * 2 1 3 33 33 H 1.09001 * 109.47069 * 59.99719 * 4 3 2 34 34 H 1.08999 * 109.46756 * 299.99199 * 4 3 2 35 35 H 1.08998 * 109.47611 * 304.99408 * 5 4 3 36 36 H 1.09008 * 109.46907 * 185.00245 * 5 4 3 37 37 H 1.09001 * 109.47211 * 299.99667 * 9 7 6 38 38 H 1.08996 * 109.47365 * 59.99707 * 9 7 6 39 39 H 1.08999 * 109.46863 * 180.02562 * 9 7 6 40 40 H 0.97000 * 119.99765 * 354.91832 * 12 10 7 41 41 H 1.08004 * 119.99926 * 0.02771 * 14 13 12 42 42 H 1.07999 * 120.00052 * 180.23642 * 15 14 13 43 43 H 0.97004 * 119.99768 * 180.02562 * 21 20 18 44 44 H 1.08004 * 119.99933 * 179.97438 * 26 16 15 45 45 H 1.08002 * 120.00490 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 8 3.3985 3.5459 1.2198 7 6 3.7191 4.9347 1.3212 8 1 3.7306 5.3786 0.3258 9 6 5.0973 5.0940 1.9666 10 6 2.6843 5.6287 2.1689 11 8 1.8146 4.9826 2.7142 12 7 2.7285 6.9665 2.3257 13 6 1.7084 7.6236 3.0237 14 6 0.4030 7.1538 2.9514 15 6 -0.6018 7.7990 3.6430 16 6 -0.3097 8.9239 4.4039 17 8 -1.2992 9.5613 5.0807 18 6 -0.9735 10.7144 5.6986 19 1 0.0123 11.1363 5.5698 20 6 -1.9040 11.3586 6.4993 21 7 -3.1051 10.8447 6.6559 22 14 -1.4525 12.9559 7.3561 23 1 -1.7869 14.1026 6.4736 24 1 -2.2147 13.0695 8.6254 25 1 0.0030 12.9657 7.6501 26 6 0.9946 9.3967 4.4721 27 6 2.0004 8.7488 3.7844 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 3.8333 0.9767 -0.8908 34 1 3.8340 0.9766 0.8892 35 1 3.3492 3.4412 -0.8430 36 1 4.9081 3.0255 -0.0912 37 1 5.0859 4.6501 2.9620 38 1 5.8458 4.5921 1.3535 39 1 5.3417 6.1534 2.0443 40 1 3.4672 7.4741 1.9547 41 1 0.1752 6.2814 2.3568 42 1 -1.6160 7.4315 3.5898 43 1 -3.7563 11.2957 7.2159 44 1 1.2216 10.2715 5.0634 45 1 3.0144 9.1167 3.8372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057423598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:34 Heat of formation + Delta-G solvation = -125.505077 kcal Electronic energy + Delta-G solvation = -26412.516252 eV Core-core repulsion = 22396.553599 eV Total energy + Delta-G solvation = -4015.962653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.29189 -38.96538 -38.43528 -37.50482 -36.29441 -34.03458 -32.56979 -32.13234 -31.27577 -30.19182 -29.14627 -27.82744 -25.42552 -24.47513 -23.00855 -22.84157 -22.22879 -21.42632 -20.05420 -18.05141 -17.78364 -17.37237 -17.11718 -16.92603 -16.22227 -15.88654 -15.46469 -15.11049 -14.70125 -14.54554 -14.37959 -13.93918 -13.63315 -13.57067 -13.48580 -13.10756 -12.95642 -12.79668 -12.65268 -12.45698 -12.37911 -11.97903 -11.78543 -11.60739 -11.54293 -11.52277 -11.40952 -11.18312 -11.04715 -10.63923 -10.43229 -10.10040 -9.84831 -9.67381 -9.44032 -9.17880 -8.68888 -8.17790 -6.89699 -6.42132 -4.00119 2.10670 2.22828 2.78934 2.92621 3.14681 3.15703 3.19966 3.39406 3.73792 3.98799 4.48232 4.58480 4.69513 4.70778 4.75408 4.82136 4.88078 4.91422 5.02974 5.08903 5.12365 5.13077 5.24438 5.34120 5.37902 5.40895 5.51067 5.57914 5.70331 5.79597 5.80873 5.94974 6.17175 6.24837 6.29420 6.76735 6.83405 6.88323 6.97646 7.04733 7.18384 7.24510 7.43717 7.73761 7.81034 8.02210 8.41343 9.03093 9.74185 10.75904 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.002175 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.885184 B =12872.591107 C =14078.002346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.377 6.377 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.346 6.346 7 C 0.073 3.927 8 H 0.086 0.914 9 C -0.171 4.171 10 C 0.504 3.496 11 O -0.499 6.499 12 N -0.660 5.660 13 C 0.039 3.961 14 C -0.067 4.067 15 C -0.176 4.176 16 C 0.147 3.853 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.219 4.219 27 C -0.090 4.090 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.400 0.600 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.270 0.730 44 H 0.131 0.869 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.420 -14.844 -15.104 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.264 6.264 7 C 0.011 3.989 8 H 0.104 0.896 9 C -0.229 4.229 10 C 0.290 3.710 11 O -0.372 6.372 12 N -0.307 5.307 13 C -0.053 4.053 14 C -0.087 4.087 15 C -0.196 4.196 16 C 0.093 3.907 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.239 4.239 27 C -0.111 4.111 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.235 0.765 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.149 0.851 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.100 -15.303 -14.418 26.482 hybrid contribution 1.094 0.959 0.061 1.456 sum 17.195 -14.345 -14.356 26.599 Atomic orbital electron populations 1.21742 0.93585 1.02106 1.03567 1.22456 0.95926 0.83790 0.99704 1.88030 1.20132 1.26195 1.95319 1.22463 0.82669 0.95242 1.00743 1.22641 0.98242 0.93042 0.87700 1.88140 1.80626 1.20288 1.37356 1.21864 0.93631 0.84249 0.99144 0.89634 1.22253 0.95011 1.02927 1.02687 1.20358 0.86342 0.82096 0.82252 1.90759 1.36264 1.64562 1.45627 1.43154 1.25384 1.06482 1.55698 1.17213 0.87576 0.97755 1.02782 1.20612 0.90439 0.98895 0.98791 1.20125 0.99568 0.97500 1.02417 1.19417 0.88182 0.91539 0.91601 1.84006 1.31885 1.34485 1.57620 1.21300 1.00830 0.96799 1.27781 0.89119 1.25295 0.94970 0.99636 0.96726 1.70054 1.04125 1.38846 1.36642 0.85711 0.78733 0.80267 0.78689 1.19912 1.20293 1.19239 1.20973 0.92487 1.04270 1.06143 1.20462 0.98318 0.95804 0.96483 0.91211 0.91399 0.91894 0.93737 0.93403 0.91895 0.92355 0.92216 0.91664 0.90892 0.91333 0.90888 0.76542 0.85815 0.86084 0.92030 0.85095 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.38 -4.51 10.31 -40.08 -0.41 -4.92 16 4 C 0.07 0.57 6.32 37.16 0.23 0.80 16 5 C 0.06 0.53 6.13 37.16 0.23 0.75 16 6 O -0.35 -4.45 9.49 -59.70 -0.57 -5.02 16 7 C 0.07 0.78 3.13 -27.88 -0.09 0.69 16 8 H 0.09 0.68 7.79 -51.93 -0.40 0.27 16 9 C -0.17 -1.34 9.46 37.16 0.35 -0.99 16 10 C 0.50 7.68 6.91 -10.98 -0.08 7.61 16 11 O -0.50 -10.18 14.23 -14.31 -0.20 -10.39 16 12 N -0.66 -9.23 5.30 -9.82 -0.05 -9.28 16 13 C 0.04 0.71 6.27 -83.62 -0.52 0.18 16 14 C -0.07 -1.38 8.65 -39.42 -0.34 -1.72 16 15 C -0.18 -4.00 9.98 -39.42 -0.39 -4.39 16 16 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 17 O -0.18 -5.12 9.75 0.02 0.00 -5.12 16 18 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 19 H 0.09 2.33 5.29 -52.49 -0.28 2.05 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 22 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.22 -4.76 9.12 -39.42 -0.36 -5.12 16 27 C -0.09 -1.65 9.96 -39.41 -0.39 -2.04 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.07 0.36 7.87 -51.92 -0.41 -0.04 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 39 H 0.07 0.44 7.75 -51.93 -0.40 0.04 16 40 H 0.40 3.89 8.41 -40.82 -0.34 3.54 16 41 H 0.12 2.53 6.46 -52.48 -0.34 2.19 16 42 H 0.12 2.67 8.06 -52.49 -0.42 2.25 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.13 2.81 5.71 -52.48 -0.30 2.51 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -36.35 382.88 -7.19 -43.54 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.67 Total: 5.40 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.80 Total: -10.75 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.71 Total: -34.07 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.18 Total: -25.45 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.35 -7.19 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057423598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.969 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds