Wall clock time and date at job start Tue Mar 31 2020 13:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47122 * 2 1 4 4 C 1.42903 * 114.00044 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46739 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47523 * 65.00129 * 5 4 3 7 7 C 1.42895 * 114.00195 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47541 * 29.99101 * 7 6 5 9 9 C 1.53007 * 109.46816 * 269.99744 * 7 6 5 10 10 C 1.50701 * 109.47478 * 149.99676 * 7 6 5 11 11 O 1.21289 * 119.99938 * 5.00004 * 10 7 6 12 12 N 1.34776 * 120.00166 * 184.71845 * 10 7 6 13 13 C 1.39988 * 119.99898 * 174.90956 * 12 10 7 14 14 C 1.38918 * 120.00472 * 326.11397 * 13 12 10 15 15 C 1.37998 * 120.00049 * 179.78992 * 14 13 12 16 16 C 1.38911 * 120.00153 * 0.46374 * 15 14 13 17 17 O 1.35774 * 119.99925 * 179.77000 * 16 15 14 18 18 C 1.34815 * 116.99953 * 185.95073 * 17 16 15 19 19 H 1.08000 * 119.99920 * 5.40051 * 18 17 16 20 20 C 1.38630 * 120.00230 * 185.40863 * 18 17 16 21 21 N 1.31579 * 119.99657 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00501 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47006 * 89.99658 * 22 20 18 24 24 H 1.48491 * 109.47604 * 209.99918 * 22 20 18 25 25 H 1.48502 * 109.46771 * 330.00272 * 22 20 18 26 26 C 1.38904 * 120.00063 * 359.78999 * 16 15 14 27 27 C 1.38000 * 120.00572 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47312 * 300.00287 * 1 2 3 30 30 H 1.09003 * 109.47194 * 60.00655 * 1 2 3 31 31 H 1.09003 * 109.47312 * 239.99713 * 2 1 3 32 32 H 1.09003 * 109.47194 * 119.99345 * 2 1 3 33 33 H 1.09001 * 109.47069 * 59.99719 * 4 3 2 34 34 H 1.08999 * 109.46756 * 299.99199 * 4 3 2 35 35 H 1.08998 * 109.47611 * 304.99408 * 5 4 3 36 36 H 1.09008 * 109.46907 * 185.00245 * 5 4 3 37 37 H 1.09001 * 109.47211 * 299.99667 * 9 7 6 38 38 H 1.08996 * 109.47365 * 59.99707 * 9 7 6 39 39 H 1.08999 * 109.46863 * 180.02562 * 9 7 6 40 40 H 0.97000 * 119.99765 * 354.91832 * 12 10 7 41 41 H 1.08004 * 119.99926 * 0.02771 * 14 13 12 42 42 H 1.07999 * 120.00052 * 180.23642 * 15 14 13 43 43 H 0.97004 * 119.99768 * 180.02562 * 21 20 18 44 44 H 1.08004 * 119.99933 * 179.97438 * 26 16 15 45 45 H 1.08002 * 120.00490 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 8 3.3985 3.5459 1.2198 7 6 3.7191 4.9347 1.3212 8 1 3.7306 5.3786 0.3258 9 6 5.0973 5.0940 1.9666 10 6 2.6843 5.6287 2.1689 11 8 1.8146 4.9826 2.7142 12 7 2.7285 6.9665 2.3257 13 6 1.7084 7.6236 3.0237 14 6 0.4030 7.1538 2.9514 15 6 -0.6018 7.7990 3.6430 16 6 -0.3097 8.9239 4.4039 17 8 -1.2992 9.5613 5.0807 18 6 -0.9735 10.7144 5.6986 19 1 0.0123 11.1363 5.5698 20 6 -1.9040 11.3586 6.4993 21 7 -3.1051 10.8447 6.6559 22 14 -1.4525 12.9559 7.3561 23 1 -1.7869 14.1026 6.4736 24 1 -2.2147 13.0695 8.6254 25 1 0.0030 12.9657 7.6501 26 6 0.9946 9.3967 4.4721 27 6 2.0004 8.7488 3.7844 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 3.8333 0.9767 -0.8908 34 1 3.8340 0.9766 0.8892 35 1 3.3492 3.4412 -0.8430 36 1 4.9081 3.0255 -0.0912 37 1 5.0859 4.6501 2.9620 38 1 5.8458 4.5921 1.3535 39 1 5.3417 6.1534 2.0443 40 1 3.4672 7.4741 1.9547 41 1 0.1752 6.2814 2.3568 42 1 -1.6160 7.4315 3.5898 43 1 -3.7563 11.2957 7.2159 44 1 1.2216 10.2715 5.0634 45 1 3.0144 9.1167 3.8372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057423598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:32 Heat of formation + Delta-G solvation = -151.363299 kcal Electronic energy + Delta-G solvation = -26413.637549 eV Core-core repulsion = 22396.553599 eV Total energy + Delta-G solvation = -4017.083950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.61167 -40.49877 -39.42845 -38.53192 -37.83292 -35.49796 -34.19729 -33.23835 -32.08284 -31.89244 -29.89393 -29.34376 -27.35335 -25.50077 -23.94563 -23.69557 -23.51317 -22.89101 -21.41148 -19.87471 -19.08989 -18.71448 -18.26060 -17.81718 -17.42147 -16.77125 -16.44475 -16.36266 -16.25847 -15.87776 -15.68978 -15.46782 -15.10037 -15.03221 -14.53247 -14.33231 -14.18406 -13.78950 -13.69342 -13.56553 -13.34484 -13.27463 -13.19597 -13.05390 -12.75143 -12.62937 -12.37870 -12.28090 -12.14346 -12.10671 -11.85152 -11.41217 -11.10616 -10.93679 -10.60488 -10.54532 -10.43787 -9.86290 -8.62076 -8.45078 -6.12598 0.49536 0.51500 1.37308 1.45446 1.55481 1.61804 1.81604 2.19684 2.77231 2.82189 2.88587 3.16147 3.49827 3.61036 3.90110 4.01551 4.06169 4.11106 4.12629 4.15221 4.25932 4.31904 4.45728 4.47924 4.48531 4.51542 4.61039 4.66949 4.73658 4.81264 4.84028 4.87682 5.00597 5.06159 5.16589 5.23716 5.23970 5.28838 5.44054 5.54614 5.66853 6.02498 6.06738 6.17237 6.33402 6.56197 6.98898 7.23008 7.79782 8.78442 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.002175 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.885184 B =12872.591107 C =14078.002346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.416 6.416 4 C 0.057 3.943 5 C 0.055 3.945 6 O -0.387 6.387 7 C 0.078 3.922 8 H 0.122 0.878 9 C -0.165 4.165 10 C 0.500 3.500 11 O -0.559 6.559 12 N -0.644 5.644 13 C 0.065 3.935 14 C -0.076 4.076 15 C -0.190 4.190 16 C 0.108 3.892 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.108 0.892 20 C -0.027 4.027 21 N -0.923 5.923 22 Si 1.022 2.978 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.249 1.249 26 C -0.218 4.218 27 C -0.077 4.077 28 H 0.093 0.907 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.427 0.573 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.135 0.865 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.202 -14.520 -16.914 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.336 6.336 4 C -0.019 4.019 5 C -0.021 4.021 6 O -0.306 6.306 7 C 0.017 3.983 8 H 0.140 0.860 9 C -0.223 4.223 10 C 0.288 3.712 11 O -0.435 6.435 12 N -0.293 5.293 13 C -0.029 4.029 14 C -0.096 4.096 15 C -0.210 4.210 16 C 0.057 3.943 17 O -0.138 6.138 18 C -0.488 4.488 19 H 0.125 0.875 20 C -0.224 4.224 21 N -0.562 5.562 22 Si 0.841 3.159 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.172 1.172 26 C -0.238 4.238 27 C -0.097 4.097 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.267 0.733 41 H 0.140 0.860 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.152 0.848 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 20.978 -14.998 -16.297 30.506 hybrid contribution -0.201 0.572 0.389 0.720 sum 20.777 -14.426 -15.908 29.881 Atomic orbital electron populations 1.21782 0.93976 1.03211 1.02119 1.22607 0.95756 0.83067 1.00938 1.87984 1.22226 1.27840 1.95592 1.22737 0.81254 0.95879 1.02044 1.22938 1.00450 0.92563 0.86165 1.88102 1.81663 1.21326 1.39512 1.21994 0.92901 0.83429 0.99929 0.86035 1.22273 0.93550 1.04765 1.01682 1.21444 0.86323 0.81987 0.81494 1.90749 1.38888 1.65855 1.48024 1.43067 1.24919 1.06527 1.54805 1.17355 0.87663 0.96890 1.00989 1.20676 0.91394 0.98773 0.98749 1.20213 0.99982 0.97690 1.03100 1.19848 0.89277 0.92594 0.92562 1.83971 1.34111 1.35799 1.59951 1.21879 1.01767 0.97192 1.27924 0.87496 1.26678 0.94631 1.03814 0.97314 1.70219 1.05819 1.41415 1.38706 0.84535 0.79331 0.74820 0.77191 1.18750 1.19983 1.17187 1.21157 0.91906 1.04416 1.06315 1.20859 0.99780 0.94693 0.94328 0.88877 0.93845 0.92262 0.91300 0.93208 0.88725 0.92748 0.91971 0.87871 0.93105 0.88451 0.88459 0.73312 0.86022 0.87223 0.91910 0.84765 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.05 0.90 6.66 71.98 0.48 1.37 16 3 O -0.42 -9.73 10.31 -144.34 -1.49 -11.22 16 4 C 0.06 0.88 6.32 71.98 0.45 1.33 16 5 C 0.05 0.79 6.13 71.98 0.44 1.23 16 6 O -0.39 -9.20 9.49 -125.59 -1.19 -10.39 16 7 C 0.08 1.41 3.13 29.85 0.09 1.50 16 8 H 0.12 1.31 7.79 -2.39 -0.02 1.29 16 9 C -0.17 -1.83 9.46 71.98 0.68 -1.15 16 10 C 0.50 14.14 6.91 87.66 0.61 14.75 16 11 O -0.56 -22.81 14.23 15.93 0.23 -22.59 16 12 N -0.64 -15.69 5.30 -303.37 -1.61 -17.30 16 13 C 0.06 2.21 6.27 38.17 0.24 2.45 16 14 C -0.08 -3.15 8.65 22.38 0.19 -2.96 16 15 C -0.19 -9.09 9.98 22.37 0.22 -8.87 16 16 C 0.11 5.58 6.65 22.59 0.15 5.73 16 17 O -0.23 -14.29 9.75 -22.86 -0.22 -14.51 16 18 C -0.41 -24.01 9.44 67.91 0.64 -23.37 16 19 H 0.11 5.57 5.29 -2.91 -0.02 5.56 16 20 C -0.03 -1.56 5.49 84.82 0.47 -1.10 16 21 N -0.92 -57.74 13.67 21.61 0.30 -57.44 16 22 Si 1.02 42.79 29.55 68.60 2.03 44.81 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 26 C -0.22 -9.36 9.12 22.37 0.20 -9.15 16 27 C -0.08 -2.55 9.96 22.38 0.22 -2.33 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.84 8.08 -2.39 -0.02 0.83 16 36 H 0.10 0.66 7.87 -2.38 -0.02 0.64 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.57 7.87 -2.39 -0.02 0.55 16 39 H 0.10 0.60 7.75 -2.39 -0.02 0.58 16 40 H 0.43 5.96 8.41 -92.71 -0.78 5.18 16 41 H 0.12 5.11 6.46 -2.91 -0.02 5.10 16 42 H 0.11 5.31 8.06 -2.91 -0.02 5.28 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.13 5.62 5.71 -2.91 -0.02 5.61 16 45 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -88.00 382.88 4.10 -83.90 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.22 Total: 27.22 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 5.84 Total: -22.48 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.31 Total: -74.74 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -2.68 Total: -58.71 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -88.00 4.10 -83.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057423598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.459 kcal (2) G-P(sol) polarization free energy of solvation -88.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds