Wall clock time and date at job start Tue Mar 31 2020 13:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47080 * 2 1 4 4 C 1.42901 * 114.00257 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47563 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.46991 * 64.99674 * 5 4 3 7 7 C 1.42899 * 113.99706 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47321 * 330.00123 * 7 6 5 9 9 C 1.52998 * 109.47060 * 90.00202 * 7 6 5 10 10 C 1.50700 * 109.47187 * 210.00034 * 7 6 5 11 11 O 1.21294 * 119.99804 * 355.00307 * 10 7 6 12 12 N 1.34776 * 120.00321 * 175.00380 * 10 7 6 13 13 C 1.39916 * 120.00249 * 175.49406 * 12 10 7 14 14 C 1.38965 * 120.03493 * 215.14407 * 13 12 10 15 15 C 1.38160 * 120.06458 * 179.97438 * 14 13 12 16 16 C 1.38170 * 120.13874 * 359.73866 * 15 14 13 17 17 C 1.38903 * 120.07213 * 0.51387 * 16 15 14 18 18 O 1.35753 * 120.03302 * 179.76696 * 17 16 15 19 19 C 1.34823 * 117.00020 * 354.34413 * 18 17 16 20 20 H 1.07999 * 120.00479 * 5.02894 * 19 18 17 21 21 C 1.38661 * 120.00081 * 185.02778 * 19 18 17 22 22 N 1.31549 * 119.99850 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00164 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47289 * 59.99620 * 23 21 19 25 25 H 1.48497 * 109.47314 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47044 * 299.99797 * 23 21 19 27 27 C 1.38714 * 120.03872 * 35.11631 * 13 12 10 28 28 H 1.09000 * 109.47622 * 299.99984 * 1 2 3 29 29 H 1.08999 * 109.47084 * 60.00715 * 1 2 3 30 30 H 1.09001 * 109.47531 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47469 * 239.99251 * 2 1 3 32 32 H 1.09001 * 109.46883 * 119.99793 * 2 1 3 33 33 H 1.09000 * 109.47549 * 59.99418 * 4 3 2 34 34 H 1.08999 * 109.47120 * 299.99726 * 4 3 2 35 35 H 1.09001 * 109.46710 * 305.00012 * 5 4 3 36 36 H 1.08999 * 109.47259 * 184.99948 * 5 4 3 37 37 H 1.08999 * 109.47117 * 59.99796 * 9 7 6 38 38 H 1.08998 * 109.47187 * 179.97438 * 9 7 6 39 39 H 1.09000 * 109.47395 * 299.99769 * 9 7 6 40 40 H 0.97004 * 119.99378 * 355.48383 * 12 10 7 41 41 H 1.07998 * 119.96848 * 359.97438 * 14 13 12 42 42 H 1.08004 * 119.92726 * 179.97438 * 15 14 13 43 43 H 1.08007 * 119.96162 * 180.25429 * 16 15 14 44 44 H 0.97001 * 120.00555 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.06786 * 0.04808 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 8 3.3974 3.5462 1.2204 7 6 3.7181 4.9350 1.3217 8 1 4.6302 5.1392 0.7609 9 6 2.5695 5.7669 0.7476 10 6 3.9267 5.2982 2.7693 11 8 3.7237 4.4747 3.6364 12 7 4.3386 6.5379 3.1006 13 6 4.4417 6.9045 4.4469 14 6 4.1420 8.2036 4.8389 15 6 4.2430 8.5662 6.1683 16 6 4.6369 7.6376 7.1126 17 6 4.9428 6.3389 6.7264 18 8 5.3343 5.4285 7.6542 19 6 5.5187 5.8771 8.9121 20 1 5.2776 6.8998 9.1616 21 6 6.0181 5.0254 9.8857 22 7 6.3114 3.7794 9.5821 23 14 6.2730 5.6467 11.6288 24 1 4.9751 6.1060 12.1854 25 1 6.8119 4.5492 12.4717 26 1 7.2341 6.7786 11.6152 27 6 4.8425 5.9716 5.3919 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8341 0.9764 -0.8891 34 1 3.8332 0.9768 0.8908 35 1 3.3499 3.4409 -0.8425 36 1 4.9082 3.0254 -0.0892 37 1 1.6574 5.5627 1.3084 38 1 2.8140 6.8263 0.8253 39 1 2.4187 5.5043 -0.2995 40 1 4.5639 7.1760 2.4055 41 1 3.8298 8.9305 4.1038 42 1 4.0099 9.5765 6.4705 43 1 4.7109 7.9230 8.1517 44 1 6.6610 3.1836 10.2630 45 1 5.0763 4.9614 5.0897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057496686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:37 Heat of formation + Delta-G solvation = -151.509185 kcal Electronic energy + Delta-G solvation = -26642.180723 eV Core-core repulsion = 22625.090447 eV Total energy + Delta-G solvation = -4017.090276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.69891 -40.48300 -39.45327 -38.54629 -37.90981 -35.63559 -34.27943 -33.35651 -32.20558 -31.09429 -30.05023 -29.64885 -27.36002 -25.72964 -23.85455 -23.70573 -23.40932 -22.97716 -21.48250 -20.03531 -19.21800 -18.31279 -18.22226 -17.82765 -17.14763 -16.78275 -16.71638 -16.50003 -16.29232 -15.93699 -15.76625 -15.56007 -15.44263 -14.97534 -14.57316 -14.37261 -14.26623 -13.74417 -13.62833 -13.58109 -13.30786 -13.21011 -13.13742 -12.92966 -12.66463 -12.61333 -12.36902 -12.32690 -12.19014 -12.16987 -11.88414 -11.44190 -11.25426 -10.90378 -10.76487 -10.60107 -10.46656 -9.36474 -8.88680 -8.46999 -6.17029 0.40518 0.70053 1.33602 1.44864 1.51607 1.53156 1.73876 2.18146 2.72230 2.82421 2.83048 3.14837 3.41876 3.68615 3.87377 3.97914 4.10241 4.12655 4.14277 4.22097 4.30685 4.36032 4.42085 4.42738 4.46619 4.51319 4.63025 4.69958 4.74246 4.78046 4.81201 4.88247 5.00925 5.04847 5.10604 5.21850 5.23524 5.40410 5.44707 5.63032 5.73614 6.02123 6.05516 6.20789 6.27228 6.49380 6.96204 7.16715 7.79517 8.76931 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.002570 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.800132 B =10890.361060 C =12464.597164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.057 3.943 5 C 0.055 3.945 6 O -0.391 6.391 7 C 0.080 3.920 8 H 0.130 0.870 9 C -0.162 4.162 10 C 0.497 3.503 11 O -0.557 6.557 12 N -0.647 5.647 13 C 0.183 3.817 14 C -0.201 4.201 15 C -0.049 4.049 16 C -0.255 4.255 17 C 0.124 3.876 18 O -0.237 6.237 19 C -0.415 4.415 20 H 0.107 0.893 21 C -0.029 4.029 22 N -0.926 5.926 23 Si 1.025 2.975 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.252 1.252 27 C -0.217 4.217 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.433 0.567 41 H 0.169 0.831 42 H 0.162 0.838 43 H 0.124 0.876 44 H 0.272 0.728 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.956 4.985 -25.203 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.019 4.019 5 C -0.020 4.020 6 O -0.310 6.310 7 C 0.019 3.981 8 H 0.147 0.853 9 C -0.219 4.219 10 C 0.285 3.715 11 O -0.432 6.432 12 N -0.297 5.297 13 C 0.088 3.912 14 C -0.221 4.221 15 C -0.067 4.067 16 C -0.275 4.275 17 C 0.073 3.927 18 O -0.144 6.144 19 C -0.491 4.491 20 H 0.125 0.875 21 C -0.225 4.225 22 N -0.564 5.564 23 Si 0.843 3.157 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.176 1.176 27 C -0.238 4.238 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.274 0.726 41 H 0.186 0.814 42 H 0.180 0.820 43 H 0.142 0.858 44 H 0.081 0.919 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.228 3.982 -24.456 25.549 hybrid contribution 0.627 -0.498 0.823 1.148 sum -5.601 3.483 -23.633 24.537 Atomic orbital electron populations 1.21756 0.93177 1.03292 1.02464 1.22639 0.96326 0.83110 1.00661 1.87919 1.21628 1.27730 1.95556 1.22690 0.81579 0.96036 1.01589 1.22931 0.99916 0.92474 0.86714 1.88127 1.80754 1.21980 1.40148 1.22014 1.02086 0.83927 0.90035 0.85257 1.22229 0.96614 1.00605 1.02464 1.21631 0.75672 0.81580 0.92584 1.90815 1.49896 1.50033 1.52490 1.43163 1.66021 1.14747 1.05736 1.17340 0.96900 0.93561 0.83388 1.20929 1.09193 0.94733 0.97244 1.21072 0.94628 0.99235 0.91768 1.21341 1.11244 0.93377 1.01518 1.19703 0.93368 0.90010 0.89616 1.83964 1.76609 1.35053 1.18728 1.21898 1.44968 0.99340 0.82912 0.87531 1.26757 0.95516 0.95177 1.05076 1.70225 1.43051 1.06593 1.36554 0.84571 0.79716 0.78124 0.73255 1.17993 1.19759 1.17639 1.20208 1.11769 1.00790 0.91065 0.93518 0.91545 0.89116 0.91300 0.94097 0.88462 0.94178 0.90039 0.89243 0.93634 0.87959 0.88785 0.72607 0.81366 0.82019 0.85833 0.91879 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.28 71.98 0.74 -1.70 16 2 C 0.05 0.90 6.66 71.98 0.48 1.38 16 3 O -0.41 -9.81 10.31 -144.35 -1.49 -11.30 16 4 C 0.06 1.11 6.32 71.98 0.45 1.56 16 5 C 0.06 0.98 6.13 71.98 0.44 1.42 16 6 O -0.39 -10.96 9.49 -125.59 -1.19 -12.15 16 7 C 0.08 1.70 3.13 29.85 0.09 1.80 16 8 H 0.13 1.58 7.79 -2.39 -0.02 1.56 16 9 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 10 C 0.50 16.16 7.02 87.66 0.62 16.77 16 11 O -0.56 -26.47 13.95 15.92 0.22 -26.25 16 12 N -0.65 -17.42 5.30 -303.55 -1.61 -19.03 16 13 C 0.18 6.70 6.30 38.14 0.24 6.94 16 14 C -0.20 -5.94 9.96 22.43 0.22 -5.72 16 15 C -0.05 -1.61 10.03 22.23 0.22 -1.38 16 16 C -0.26 -11.47 9.16 22.41 0.21 -11.26 16 17 C 0.12 6.81 6.64 22.56 0.15 6.96 16 18 O -0.24 -15.62 9.76 -22.70 -0.22 -15.84 16 19 C -0.42 -25.59 9.49 67.92 0.64 -24.94 16 20 H 0.11 5.89 5.20 -2.91 -0.02 5.88 16 21 C -0.03 -1.71 5.49 84.84 0.47 -1.24 16 22 N -0.93 -60.51 13.67 21.61 0.30 -60.22 16 23 Si 1.03 44.63 29.55 68.60 2.03 46.66 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 27 C -0.22 -10.90 8.64 22.51 0.19 -10.71 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.06 7.87 -2.39 -0.02 1.04 16 36 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.88 8.08 -2.39 -0.02 0.86 16 39 H 0.09 0.99 7.87 -2.39 -0.02 0.97 16 40 H 0.43 6.44 8.76 -92.71 -0.81 5.63 16 41 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.12 5.54 5.63 -2.91 -0.02 5.52 16 44 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 45 H 0.10 5.48 6.23 -2.91 -0.02 5.46 16 Total: -1.00 -95.93 383.16 4.08 -91.85 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.19 Total: 28.14 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 5.85 Total: -21.86 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.31 Total: -79.24 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -2.68 Total: -65.54 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -95.93 4.08 -91.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057496686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.664 kcal (2) G-P(sol) polarization free energy of solvation -95.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds