Wall clock time and date at job start Tue Mar 31 2020 13:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47446 * 2 1 4 4 C 1.42901 * 114.00059 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46915 * 180.02562 * 4 3 2 6 6 O 1.42893 * 109.47403 * 64.99849 * 5 4 3 7 7 C 1.42908 * 114.00169 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.46624 * 30.00466 * 7 6 5 9 9 C 1.52999 * 109.47064 * 269.99974 * 7 6 5 10 10 C 1.50701 * 109.46837 * 150.00265 * 7 6 5 11 11 O 1.21287 * 120.00456 * 5.00184 * 10 7 6 12 12 N 1.34783 * 119.99374 * 185.00331 * 10 7 6 13 13 C 1.39925 * 119.99364 * 174.79296 * 12 10 7 14 14 C 1.38958 * 120.03914 * 326.30381 * 13 12 10 15 15 C 1.38155 * 120.06617 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.13970 * 359.70113 * 15 14 13 17 17 C 1.38907 * 120.06986 * 0.55261 * 16 15 14 18 18 O 1.35755 * 120.03094 * 179.74767 * 17 16 15 19 19 C 1.34828 * 116.99653 * 173.81792 * 18 17 16 20 20 H 1.08003 * 120.00533 * 354.58933 * 19 18 17 21 21 C 1.38654 * 120.00125 * 174.59426 * 19 18 17 22 22 N 1.31558 * 119.99788 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46863 * 90.00143 * 23 21 19 25 25 H 1.48506 * 109.46875 * 210.00119 * 23 21 19 26 26 H 1.48491 * 109.47274 * 329.99885 * 23 21 19 27 27 C 1.38723 * 120.03332 * 146.32865 * 13 12 10 28 28 H 1.09006 * 109.46710 * 299.99746 * 1 2 3 29 29 H 1.08999 * 109.47198 * 59.99330 * 1 2 3 30 30 H 1.08998 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47069 * 240.00052 * 2 1 3 32 32 H 1.08999 * 109.47198 * 120.00670 * 2 1 3 33 33 H 1.08992 * 109.47036 * 60.00352 * 4 3 2 34 34 H 1.08997 * 109.47035 * 300.00203 * 4 3 2 35 35 H 1.09011 * 109.47230 * 304.99980 * 5 4 3 36 36 H 1.08997 * 109.47196 * 185.00125 * 5 4 3 37 37 H 1.09004 * 109.46670 * 179.97438 * 9 7 6 38 38 H 1.08996 * 109.47367 * 300.00395 * 9 7 6 39 39 H 1.08997 * 109.47003 * 60.00306 * 9 7 6 40 40 H 0.96997 * 120.00492 * 354.79130 * 12 10 7 41 41 H 1.07992 * 119.96524 * 0.02562 * 14 13 12 42 42 H 1.08006 * 119.92920 * 179.97438 * 15 14 13 43 43 H 1.08004 * 119.96685 * 180.29639 * 16 15 14 44 44 H 0.97001 * 119.99959 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.06766 * 359.94913 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 8 3.3977 3.5450 1.2221 7 6 3.7195 4.9336 1.3252 8 1 3.7323 5.3783 0.3301 9 6 5.0969 5.0912 1.9722 10 6 2.6842 5.6275 2.1723 11 8 1.8134 4.9817 2.7161 12 7 2.7260 6.9660 2.3256 13 6 1.7046 7.6226 3.0208 14 6 0.4002 7.1485 2.9522 15 6 -0.6089 7.7968 3.6380 16 6 -0.3237 8.9143 4.3988 17 6 0.9773 9.3963 4.4673 18 8 1.2556 10.4973 5.2110 19 6 2.5541 10.8373 5.3389 20 1 3.3228 10.1952 4.9348 21 6 2.9026 12.0112 5.9893 22 7 1.9663 12.7935 6.4811 23 14 4.7016 12.4817 6.1671 24 1 5.1176 13.2981 4.9984 25 1 4.8864 13.2696 7.4123 26 1 5.5309 11.2517 6.2320 27 6 1.9929 8.7480 3.7790 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8341 0.9765 -0.8891 34 1 3.8333 0.9766 0.8908 35 1 3.3500 3.4416 -0.8408 36 1 4.9083 3.0254 -0.0880 37 1 5.3425 6.1504 2.0503 38 1 5.0841 4.6464 2.9672 39 1 5.8457 4.5893 1.3595 40 1 3.4641 7.4739 1.9541 41 1 0.1750 6.2725 2.3622 42 1 -1.6220 7.4266 3.5827 43 1 -1.1139 9.4161 4.9376 44 1 2.2101 13.6146 6.9364 45 1 3.0060 9.1182 3.8342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057496689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:43 Heat of formation + Delta-G solvation = -126.407591 kcal Electronic energy + Delta-G solvation = -26663.106880 eV Core-core repulsion = 22647.105091 eV Total energy + Delta-G solvation = -4016.001789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.34993 -38.97843 -38.43637 -37.49550 -36.26809 -34.27288 -32.60570 -32.21220 -31.37273 -29.36102 -29.05462 -28.40972 -25.36544 -24.68993 -23.03660 -22.87645 -21.83504 -21.76818 -19.96051 -18.05447 -17.96524 -17.42808 -17.02824 -16.79564 -16.11096 -15.63296 -15.31664 -15.10339 -15.01518 -14.68052 -14.33821 -14.14310 -13.74278 -13.63837 -13.53943 -13.10973 -12.99227 -12.93766 -12.65464 -12.47517 -12.28695 -11.98984 -11.72128 -11.62825 -11.56074 -11.42414 -11.21218 -11.07673 -10.99600 -10.73568 -10.43638 -10.11245 -9.86625 -9.79752 -9.51499 -9.29823 -8.79535 -7.71682 -7.14050 -6.44294 -4.03916 1.97832 2.39423 2.75252 2.89956 3.11704 3.12579 3.17146 3.37709 3.71430 3.96101 4.47839 4.59500 4.68559 4.70160 4.74505 4.80642 4.87829 4.91190 5.03342 5.07068 5.10601 5.11507 5.26841 5.29303 5.39677 5.42903 5.48455 5.66965 5.73422 5.84863 5.90728 6.01548 6.08906 6.25958 6.29687 6.64551 6.77099 6.95532 7.00334 7.02586 7.14642 7.33469 7.43412 7.71322 7.82700 8.00007 8.34039 9.01073 9.71990 10.73812 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019234 B = 0.002437 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.405170 B =11487.806136 C =12773.086142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.378 6.378 4 C 0.066 3.934 5 C 0.060 3.940 6 O -0.347 6.347 7 C 0.073 3.927 8 H 0.088 0.912 9 C -0.173 4.173 10 C 0.510 3.490 11 O -0.494 6.494 12 N -0.669 5.669 13 C 0.182 3.818 14 C -0.205 4.205 15 C -0.062 4.062 16 C -0.200 4.200 17 C 0.168 3.832 18 O -0.176 6.176 19 C -0.391 4.391 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.256 4.256 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.405 0.595 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.270 0.730 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 -19.865 -15.319 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.264 6.264 7 C 0.011 3.989 8 H 0.105 0.895 9 C -0.230 4.230 10 C 0.295 3.705 11 O -0.365 6.365 12 N -0.315 5.315 13 C 0.089 3.911 14 C -0.226 4.226 15 C -0.081 4.081 16 C -0.220 4.220 17 C 0.114 3.886 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.277 4.277 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.240 0.760 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.402 -19.960 -14.550 25.284 hybrid contribution 1.782 0.395 -0.355 1.859 sum 7.184 -19.565 -14.905 25.623 Atomic orbital electron populations 1.21740 0.93631 1.02084 1.03506 1.22454 0.95888 0.83827 0.99736 1.88024 1.20196 1.26169 1.95326 1.22465 0.82594 0.95260 1.00780 1.22645 0.98328 0.93012 0.87657 1.88132 1.80563 1.20305 1.37447 1.21869 0.93614 0.84225 0.99163 0.89459 1.22267 0.94870 1.03196 1.02706 1.20386 0.86233 0.81939 0.81940 1.90756 1.35984 1.64570 1.45240 1.43416 1.25578 1.06846 1.55685 1.17380 0.87113 0.92878 0.93725 1.20558 0.91069 1.03570 1.07391 1.20534 0.98036 0.94093 0.95474 1.20256 0.94870 1.00103 1.06731 1.19079 0.92645 0.87618 0.89289 1.84022 1.28428 1.36559 1.58975 1.21260 0.80177 1.06819 1.38495 0.89291 1.25276 1.00041 0.94932 0.96286 1.70037 1.32731 1.12360 1.34587 0.85732 0.80606 0.78955 0.78235 1.19927 1.20257 1.19285 1.20807 1.00742 1.00905 1.05270 0.91449 0.91913 0.91217 0.93721 0.93397 0.91856 0.92333 0.92200 0.91583 0.90697 0.90812 0.91215 0.75956 0.86330 0.86572 0.86356 0.92039 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.38 -4.44 10.31 -40.09 -0.41 -4.86 16 4 C 0.07 0.57 6.32 37.16 0.23 0.81 16 5 C 0.06 0.54 6.13 37.16 0.23 0.76 16 6 O -0.35 -4.53 9.49 -59.70 -0.57 -5.10 16 7 C 0.07 0.82 3.13 -27.88 -0.09 0.74 16 8 H 0.09 0.74 7.79 -51.93 -0.40 0.33 16 9 C -0.17 -1.53 9.47 37.16 0.35 -1.17 16 10 C 0.51 8.07 6.91 -10.98 -0.08 7.99 16 11 O -0.49 -10.08 14.21 -14.31 -0.20 -10.29 16 12 N -0.67 -10.27 5.30 -9.88 -0.05 -10.32 16 13 C 0.18 3.56 6.27 -83.72 -0.52 3.03 16 14 C -0.21 -4.10 8.65 -39.35 -0.34 -4.44 16 15 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 16 C -0.20 -4.37 9.99 -39.36 -0.39 -4.76 16 17 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 18 O -0.18 -5.03 9.76 0.04 0.00 -5.03 16 19 C -0.39 -10.84 9.44 30.89 0.29 -10.54 16 20 H 0.09 2.27 5.30 -52.48 -0.28 1.99 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 23 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 C -0.26 -5.58 9.04 -39.21 -0.35 -5.93 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.50 8.09 -51.92 -0.42 0.08 16 36 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 37 H 0.07 0.56 7.77 -51.93 -0.40 0.16 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 40 H 0.41 4.73 8.43 -40.82 -0.34 4.38 16 41 H 0.12 2.36 6.43 -52.49 -0.34 2.02 16 42 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 43 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.13 2.74 5.71 -52.49 -0.30 2.44 16 LS Contribution 382.90 15.07 5.77 5.77 Total: -1.00 -35.86 382.90 -7.19 -43.05 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.67 Total: 6.41 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.79 Total: -10.44 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.71 Total: -34.76 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.18 Total: -25.27 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.86 -7.19 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057496689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.355 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds