Wall clock time and date at job start Tue Mar 31 2020 13:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47446 * 2 1 4 4 C 1.42901 * 114.00059 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46915 * 180.02562 * 4 3 2 6 6 O 1.42893 * 109.47403 * 64.99849 * 5 4 3 7 7 C 1.42908 * 114.00169 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.46624 * 30.00466 * 7 6 5 9 9 C 1.52999 * 109.47064 * 269.99974 * 7 6 5 10 10 C 1.50701 * 109.46837 * 150.00265 * 7 6 5 11 11 O 1.21287 * 120.00456 * 5.00184 * 10 7 6 12 12 N 1.34783 * 119.99374 * 185.00331 * 10 7 6 13 13 C 1.39925 * 119.99364 * 174.79296 * 12 10 7 14 14 C 1.38958 * 120.03914 * 326.30381 * 13 12 10 15 15 C 1.38155 * 120.06617 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.13970 * 359.70113 * 15 14 13 17 17 C 1.38907 * 120.06986 * 0.55261 * 16 15 14 18 18 O 1.35755 * 120.03094 * 179.74767 * 17 16 15 19 19 C 1.34828 * 116.99653 * 173.81792 * 18 17 16 20 20 H 1.08003 * 120.00533 * 354.58933 * 19 18 17 21 21 C 1.38654 * 120.00125 * 174.59426 * 19 18 17 22 22 N 1.31558 * 119.99788 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46863 * 90.00143 * 23 21 19 25 25 H 1.48506 * 109.46875 * 210.00119 * 23 21 19 26 26 H 1.48491 * 109.47274 * 329.99885 * 23 21 19 27 27 C 1.38723 * 120.03332 * 146.32865 * 13 12 10 28 28 H 1.09006 * 109.46710 * 299.99746 * 1 2 3 29 29 H 1.08999 * 109.47198 * 59.99330 * 1 2 3 30 30 H 1.08998 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47069 * 240.00052 * 2 1 3 32 32 H 1.08999 * 109.47198 * 120.00670 * 2 1 3 33 33 H 1.08992 * 109.47036 * 60.00352 * 4 3 2 34 34 H 1.08997 * 109.47035 * 300.00203 * 4 3 2 35 35 H 1.09011 * 109.47230 * 304.99980 * 5 4 3 36 36 H 1.08997 * 109.47196 * 185.00125 * 5 4 3 37 37 H 1.09004 * 109.46670 * 179.97438 * 9 7 6 38 38 H 1.08996 * 109.47367 * 300.00395 * 9 7 6 39 39 H 1.08997 * 109.47003 * 60.00306 * 9 7 6 40 40 H 0.96997 * 120.00492 * 354.79130 * 12 10 7 41 41 H 1.07992 * 119.96524 * 0.02562 * 14 13 12 42 42 H 1.08006 * 119.92920 * 179.97438 * 15 14 13 43 43 H 1.08004 * 119.96685 * 180.29639 * 16 15 14 44 44 H 0.97001 * 119.99959 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.06766 * 359.94913 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 8 3.3977 3.5450 1.2221 7 6 3.7195 4.9336 1.3252 8 1 3.7323 5.3783 0.3301 9 6 5.0969 5.0912 1.9722 10 6 2.6842 5.6275 2.1723 11 8 1.8134 4.9817 2.7161 12 7 2.7260 6.9660 2.3256 13 6 1.7046 7.6226 3.0208 14 6 0.4002 7.1485 2.9522 15 6 -0.6089 7.7968 3.6380 16 6 -0.3237 8.9143 4.3988 17 6 0.9773 9.3963 4.4673 18 8 1.2556 10.4973 5.2110 19 6 2.5541 10.8373 5.3389 20 1 3.3228 10.1952 4.9348 21 6 2.9026 12.0112 5.9893 22 7 1.9663 12.7935 6.4811 23 14 4.7016 12.4817 6.1671 24 1 5.1176 13.2981 4.9984 25 1 4.8864 13.2696 7.4123 26 1 5.5309 11.2517 6.2320 27 6 1.9929 8.7480 3.7790 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8341 0.9765 -0.8891 34 1 3.8333 0.9766 0.8908 35 1 3.3500 3.4416 -0.8408 36 1 4.9083 3.0254 -0.0880 37 1 5.3425 6.1504 2.0503 38 1 5.0841 4.6464 2.9672 39 1 5.8457 4.5893 1.3595 40 1 3.4641 7.4739 1.9541 41 1 0.1750 6.2725 2.3622 42 1 -1.6220 7.4266 3.5827 43 1 -1.1139 9.4161 4.9376 44 1 2.2101 13.6146 6.9364 45 1 3.0060 9.1182 3.8342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057496689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:42 Heat of formation + Delta-G solvation = -151.139013 kcal Electronic energy + Delta-G solvation = -26664.179315 eV Core-core repulsion = 22647.105091 eV Total energy + Delta-G solvation = -4017.074224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.70059 -40.49662 -39.42903 -38.51209 -37.84805 -35.74415 -34.24643 -33.33993 -32.18936 -30.90908 -30.15014 -29.71882 -27.32529 -25.74476 -23.68560 -23.65659 -23.51723 -23.10154 -21.39168 -19.81367 -19.46198 -18.33493 -18.23472 -17.73660 -17.10530 -16.88356 -16.72098 -16.37264 -16.30243 -15.91039 -15.76891 -15.58145 -15.40353 -15.00062 -14.56806 -14.33137 -14.22850 -13.80158 -13.70336 -13.55339 -13.35841 -13.27218 -13.07945 -12.76443 -12.68533 -12.63082 -12.41732 -12.28430 -12.15136 -12.10040 -11.86240 -11.49276 -11.26801 -11.00376 -10.74312 -10.54264 -10.49574 -9.37785 -8.89980 -8.45483 -6.14391 0.36852 0.67348 1.37108 1.45566 1.53927 1.54827 1.72213 2.19016 2.76842 2.82157 2.83824 3.16451 3.47543 3.53336 3.85922 3.97949 4.10567 4.12303 4.15474 4.25236 4.30908 4.32273 4.42691 4.45344 4.48813 4.51583 4.61784 4.64211 4.71426 4.78105 4.79781 4.88666 5.00385 5.01941 5.11383 5.19305 5.25015 5.36236 5.44687 5.64681 5.65566 6.01931 6.03313 6.16996 6.32751 6.45738 6.98572 7.08795 7.77699 8.77440 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019234 B = 0.002437 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.405170 B =11487.806136 C =12773.086142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.058 3.942 5 C 0.054 3.946 6 O -0.384 6.384 7 C 0.080 3.920 8 H 0.124 0.876 9 C -0.168 4.168 10 C 0.506 3.494 11 O -0.546 6.546 12 N -0.657 5.657 13 C 0.188 3.812 14 C -0.203 4.203 15 C -0.052 4.052 16 C -0.213 4.213 17 C 0.135 3.865 18 O -0.225 6.225 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.019 2.981 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.252 1.252 27 C -0.257 4.257 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.425 0.575 41 H 0.124 0.876 42 H 0.152 0.848 43 H 0.120 0.880 44 H 0.273 0.727 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.932 -21.639 -17.667 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.335 6.335 4 C -0.018 4.018 5 C -0.022 4.022 6 O -0.303 6.303 7 C 0.019 3.981 8 H 0.141 0.859 9 C -0.226 4.226 10 C 0.294 3.706 11 O -0.421 6.421 12 N -0.305 5.305 13 C 0.093 3.907 14 C -0.224 4.224 15 C -0.070 4.070 16 C -0.233 4.233 17 C 0.083 3.917 18 O -0.131 6.131 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.839 3.161 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.176 1.176 27 C -0.279 4.279 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.264 0.736 41 H 0.142 0.858 42 H 0.170 0.830 43 H 0.138 0.862 44 H 0.082 0.918 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.966 -21.775 -16.956 28.724 hybrid contribution 0.860 0.684 0.225 1.122 sum 8.826 -21.091 -16.730 28.331 Atomic orbital electron populations 1.21776 0.93790 1.03225 1.02201 1.22617 0.95904 0.83036 1.00899 1.87978 1.22096 1.27865 1.95590 1.22714 0.81340 0.95677 1.02064 1.22955 1.00437 0.92691 0.86137 1.88096 1.81492 1.21011 1.39654 1.21952 0.92595 0.83650 0.99889 0.85885 1.22286 0.93933 1.04493 1.01850 1.21423 0.86375 0.81499 0.81301 1.90729 1.38378 1.65557 1.47441 1.43384 1.25168 1.07139 1.54786 1.17422 0.88241 0.92027 0.92962 1.20830 0.91454 1.03274 1.06825 1.20897 0.99795 0.92635 0.93714 1.20475 0.94248 1.01034 1.07522 1.19592 0.94407 0.87492 0.90171 1.83991 1.29094 1.38667 1.61365 1.21800 0.80540 1.07550 1.38963 0.87942 1.26616 1.05484 0.94480 0.95496 1.70191 1.35616 1.13321 1.36594 0.84576 0.73938 0.79113 0.78517 1.18486 1.19955 1.17569 1.20847 1.00348 1.01406 1.05256 0.93648 0.92232 0.88904 0.91422 0.93231 0.88714 0.92741 0.91824 0.88044 0.89128 0.93006 0.88118 0.73610 0.85824 0.83008 0.86156 0.91841 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.83 6.66 71.98 0.48 1.31 16 3 O -0.41 -9.35 10.31 -144.33 -1.49 -10.83 16 4 C 0.06 0.88 6.32 71.98 0.45 1.34 16 5 C 0.05 0.79 6.13 71.98 0.44 1.23 16 6 O -0.38 -9.26 9.49 -125.59 -1.19 -10.45 16 7 C 0.08 1.58 3.13 29.85 0.09 1.67 16 8 H 0.12 1.54 7.79 -2.39 -0.02 1.52 16 9 C -0.17 -2.39 9.47 71.98 0.68 -1.71 16 10 C 0.51 15.20 6.91 87.66 0.61 15.80 16 11 O -0.55 -22.08 14.21 15.94 0.23 -21.85 16 12 N -0.66 -18.93 5.30 -303.54 -1.61 -20.54 16 13 C 0.19 7.18 6.27 38.14 0.24 7.42 16 14 C -0.20 -7.90 8.65 22.42 0.19 -7.71 16 15 C -0.05 -1.97 10.03 22.23 0.22 -1.75 16 16 C -0.21 -9.48 9.99 22.41 0.22 -9.25 16 17 C 0.13 6.80 6.64 22.56 0.15 6.95 16 18 O -0.22 -13.45 9.76 -22.78 -0.22 -13.67 16 19 C -0.41 -23.54 9.44 67.92 0.64 -22.89 16 20 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 22 N -0.92 -55.86 13.67 21.61 0.30 -55.56 16 23 Si 1.02 41.67 29.55 68.60 2.03 43.70 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 27 C -0.26 -11.25 9.04 22.51 0.20 -11.05 16 28 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.87 8.09 -2.38 -0.02 0.85 16 36 H 0.10 0.74 7.87 -2.39 -0.02 0.72 16 37 H 0.09 1.00 7.77 -2.39 -0.02 0.98 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.84 7.87 -2.39 -0.02 0.82 16 40 H 0.43 8.75 8.43 -92.71 -0.78 7.97 16 41 H 0.12 4.78 6.43 -2.91 -0.02 4.76 16 42 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 44 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.13 5.63 5.71 -2.91 -0.02 5.61 16 Total: -1.00 -83.30 382.90 4.10 -79.20 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.22 Total: 31.14 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 5.84 Total: -21.14 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -1.31 Total: -76.10 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -2.68 Total: -56.81 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -83.30 4.10 -79.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057496689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.940 kcal (2) G-P(sol) polarization free energy of solvation -83.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds