Wall clock time and date at job start Tue Mar 31 2020 13:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38670 * 120.04381 * 0.02562 * 3 2 1 5 5 C 1.38228 * 120.09051 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90960 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46925 * 90.00468 * 6 5 4 8 8 O 1.21274 * 120.00269 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00146 * 359.97438 * 9 7 6 11 11 C 1.46503 * 119.99931 * 179.97438 * 9 7 6 12 12 C 1.50699 * 109.46634 * 89.99927 * 11 9 7 13 13 H 1.08001 * 120.00514 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99715 * 179.97438 * 12 11 9 15 15 N 1.31512 * 119.99894 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00130 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47251 * 60.00215 * 16 14 12 18 18 H 1.48502 * 109.47418 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47036 * 300.00314 * 16 14 12 20 20 C 1.38228 * 120.17656 * 0.02562 * 5 4 3 21 21 C 1.38665 * 120.09327 * 359.97438 * 20 5 4 22 22 O 1.35998 * 120.04910 * 180.02562 * 21 20 5 23 23 C 1.42902 * 116.99524 * 0.02562 * 22 21 20 24 24 C 1.38974 * 120.04780 * 179.72805 * 3 2 1 25 25 O 1.36099 * 120.08712 * 359.97438 * 24 3 2 26 26 C 1.42896 * 117.00088 * 90.00136 * 25 24 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08003 * 119.95597 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46711 * 210.00291 * 6 5 4 32 32 H 1.08999 * 109.47223 * 329.99898 * 6 5 4 33 33 H 1.08998 * 109.47123 * 89.99845 * 10 9 7 34 34 H 1.08995 * 109.47014 * 210.00247 * 10 9 7 35 35 H 1.09003 * 109.46908 * 330.00015 * 10 9 7 36 36 H 1.08995 * 109.47135 * 209.99894 * 11 9 7 37 37 H 1.08998 * 109.46977 * 329.99918 * 11 9 7 38 38 H 0.97011 * 120.00041 * 179.97438 * 15 14 12 39 39 H 1.08005 * 119.95608 * 180.02562 * 20 5 4 40 40 H 1.09003 * 109.47475 * 60.00174 * 23 22 21 41 41 H 1.09005 * 109.46842 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47269 * 299.99771 * 23 22 21 43 43 H 1.09002 * 109.47232 * 299.99741 * 26 25 24 44 44 H 1.09005 * 109.47428 * 59.99802 * 26 25 24 45 45 H 1.09000 * 109.47319 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3753 0.0005 5 6 1.9188 3.6074 0.0011 6 6 1.0951 4.8693 0.0011 7 6 0.8201 5.2896 1.4218 8 8 1.2502 4.6293 2.3436 9 7 0.0962 6.3995 1.6681 10 6 -0.4229 7.1976 0.5547 11 6 -0.1716 6.8079 3.0494 12 6 0.9268 7.7239 3.5242 13 1 1.7425 7.9769 2.8632 14 6 0.8898 8.2397 4.8024 15 7 -0.1037 7.9320 5.6071 16 14 2.2509 9.3757 5.3908 17 1 2.3035 10.5777 4.5203 18 1 1.9796 9.7896 6.7910 19 1 3.5520 8.6626 5.3293 20 6 3.2989 3.6850 0.0005 21 6 4.0605 2.5262 0.0000 22 8 5.4183 2.6036 0.0000 23 6 5.9934 3.9118 0.0011 24 6 3.4343 1.2855 0.0057 25 8 4.1781 0.1458 0.0118 26 6 4.5381 -0.4008 -1.2584 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3188 0.0005 31 1 1.6421 5.6601 -0.5125 32 1 0.1515 4.6873 -0.5132 33 1 -1.4124 6.8342 0.2775 34 1 -0.4910 8.2424 0.8573 35 1 0.2488 7.1098 -0.2994 36 1 -1.1264 7.3315 3.0948 37 1 -0.2104 5.9255 3.6881 38 1 -0.1296 8.2947 6.5065 39 1 3.7848 4.6496 0.0014 40 1 5.6693 4.4505 0.8917 41 1 7.0804 3.8308 0.0006 42 1 5.6692 4.4520 -0.8883 43 1 3.6351 -0.6435 -1.8187 44 1 5.1257 0.3294 -1.8149 45 1 5.1285 -1.3051 -1.1108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060617395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:24 Heat of formation + Delta-G solvation = -112.704208 kcal Electronic energy + Delta-G solvation = -27924.020184 eV Core-core repulsion = 23908.612618 eV Total energy + Delta-G solvation = -4015.407566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82116 -39.04926 -38.99363 -37.69716 -36.50250 -34.77570 -32.70947 -31.79862 -29.62863 -28.78443 -27.87181 -27.48211 -27.14586 -25.95563 -25.25938 -22.91774 -21.99655 -21.51528 -18.83665 -18.11345 -17.24125 -17.22749 -16.59565 -16.47884 -16.39471 -16.08541 -15.53520 -15.32860 -15.00622 -14.74692 -14.69261 -14.53098 -14.40092 -13.91086 -13.28721 -12.82444 -12.69772 -12.62058 -12.33551 -12.20159 -12.12612 -11.88859 -11.78739 -11.62763 -11.55193 -11.46497 -11.23060 -10.96614 -10.90936 -10.57299 -10.53257 -10.17361 -9.92628 -9.66497 -8.96472 -8.44853 -8.12082 -8.11713 -7.66986 -6.05766 -4.10770 1.19812 1.42667 2.80284 3.29984 3.34775 3.35394 3.41651 3.45120 3.61660 3.86051 4.08426 4.43542 4.64217 4.89229 5.02243 5.04207 5.09566 5.12045 5.14448 5.17073 5.22085 5.30369 5.34831 5.37562 5.41759 5.44389 5.48675 5.51066 5.57167 5.65851 5.67883 5.88939 6.02335 6.17236 6.19190 6.39510 6.56693 7.01617 7.04901 7.24211 7.42308 7.51210 7.73305 7.90207 8.21516 8.38051 8.87968 9.06932 9.54288 11.02318 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.003410 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.806231 B = 8208.331050 C = 9167.113651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.149 3.851 4 C -0.218 4.218 5 C 0.021 3.979 6 C -0.107 4.107 7 C 0.505 3.495 8 O -0.530 6.530 9 N -0.604 5.604 10 C 0.082 3.918 11 C 0.246 3.754 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.216 4.216 21 C 0.150 3.850 22 O -0.305 6.305 23 C 0.024 3.976 24 C 0.021 3.979 25 O -0.312 6.312 26 C 0.036 3.964 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.134 0.866 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 -10.741 -18.718 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.103 3.897 4 C -0.237 4.237 5 C 0.021 3.979 6 C -0.147 4.147 7 C 0.291 3.709 8 O -0.406 6.406 9 N -0.337 5.337 10 C -0.062 4.062 11 C 0.127 3.873 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.235 4.235 21 C 0.104 3.896 22 O -0.218 6.218 23 C -0.071 4.071 24 C -0.024 4.024 25 O -0.228 6.228 26 C -0.059 4.059 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.994 -11.494 -17.860 21.611 hybrid contribution 0.316 1.359 0.190 1.408 sum 4.311 -10.135 -17.670 20.822 Atomic orbital electron populations 1.23119 0.78253 1.03891 1.01762 1.86112 1.21344 1.25999 1.88359 1.18836 0.90507 0.84800 0.95580 1.20852 1.00041 0.91012 1.11771 1.18925 0.92619 0.93514 0.92872 1.20818 1.00873 0.95714 0.97329 1.20071 0.79514 0.81485 0.89846 1.90718 1.50342 1.53593 1.45955 1.48170 1.51936 1.24276 1.09286 1.21653 0.97714 0.97314 0.89500 1.19280 0.96277 0.96171 0.75572 1.21385 1.08387 1.28312 0.98563 0.92568 1.24938 0.96040 0.96709 0.96405 1.69921 1.31124 1.44627 1.07673 0.86563 0.82387 0.80757 0.77737 1.20249 1.21126 1.20179 1.20891 0.93933 0.97298 1.11375 1.18856 0.82839 0.92532 0.95403 1.86110 1.16676 1.30728 1.88295 1.23136 0.99026 0.83038 1.01900 1.16884 0.86314 0.84527 1.14646 1.86182 1.70090 1.38005 1.28497 1.22942 0.99252 0.98282 0.85451 0.88201 0.92632 0.92120 0.84937 0.88196 0.88339 0.93722 0.90717 0.92465 0.95015 0.93856 0.92629 0.84840 0.91972 0.88168 0.92598 0.93970 0.93958 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.28 10.28 -34.30 -0.35 -4.63 16 3 C 0.15 2.30 6.70 -39.15 -0.26 2.04 16 4 C -0.22 -3.21 8.69 -39.43 -0.34 -3.55 16 5 C 0.02 0.33 4.37 -104.63 -0.46 -0.13 16 6 C -0.11 -1.53 4.38 -29.04 -0.13 -1.65 16 7 C 0.51 10.28 7.67 -10.99 -0.08 10.19 16 8 O -0.53 -13.44 15.61 5.56 0.09 -13.35 16 9 N -0.60 -12.50 2.86 -182.96 -0.52 -13.02 16 10 C 0.08 1.23 10.24 59.85 0.61 1.84 16 11 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 12 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 16 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.22 -3.30 8.69 -39.43 -0.34 -3.64 16 21 C 0.15 2.37 6.70 -39.15 -0.26 2.11 16 22 O -0.31 -4.44 10.28 -34.31 -0.35 -4.80 16 23 C 0.02 0.25 9.81 101.05 0.99 1.25 16 24 C 0.02 0.35 5.75 -39.03 -0.22 0.13 16 25 O -0.31 -4.99 9.99 -45.31 -0.45 -5.45 16 26 C 0.04 0.41 11.13 101.05 1.13 1.53 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.13 1.67 6.29 -52.48 -0.33 1.34 16 31 H 0.10 1.19 7.34 -51.92 -0.38 0.81 16 32 H 0.10 1.10 8.05 -51.93 -0.42 0.69 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 35 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.13 1.83 6.29 -52.48 -0.33 1.50 16 40 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -36.78 380.70 -5.66 -42.44 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.69 Total: -1.97 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 1.17 Total: 4.14 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.21 Total: -38.94 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.07 Total: -28.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.78 -5.66 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.266 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds