Wall clock time and date at job start Tue Mar 31 2020 13:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38670 * 120.04381 * 0.02562 * 3 2 1 5 5 C 1.38228 * 120.09051 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90960 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46925 * 90.00468 * 6 5 4 8 8 O 1.21274 * 120.00269 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00146 * 359.97438 * 9 7 6 11 11 C 1.46503 * 119.99931 * 179.97438 * 9 7 6 12 12 C 1.50699 * 109.46634 * 89.99927 * 11 9 7 13 13 H 1.08001 * 120.00514 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99715 * 179.97438 * 12 11 9 15 15 N 1.31512 * 119.99894 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00130 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47251 * 60.00215 * 16 14 12 18 18 H 1.48502 * 109.47418 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47036 * 300.00314 * 16 14 12 20 20 C 1.38228 * 120.17656 * 0.02562 * 5 4 3 21 21 C 1.38665 * 120.09327 * 359.97438 * 20 5 4 22 22 O 1.35998 * 120.04910 * 180.02562 * 21 20 5 23 23 C 1.42902 * 116.99524 * 0.02562 * 22 21 20 24 24 C 1.38974 * 120.04780 * 179.72805 * 3 2 1 25 25 O 1.36099 * 120.08712 * 359.97438 * 24 3 2 26 26 C 1.42896 * 117.00088 * 90.00136 * 25 24 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08003 * 119.95597 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46711 * 210.00291 * 6 5 4 32 32 H 1.08999 * 109.47223 * 329.99898 * 6 5 4 33 33 H 1.08998 * 109.47123 * 89.99845 * 10 9 7 34 34 H 1.08995 * 109.47014 * 210.00247 * 10 9 7 35 35 H 1.09003 * 109.46908 * 330.00015 * 10 9 7 36 36 H 1.08995 * 109.47135 * 209.99894 * 11 9 7 37 37 H 1.08998 * 109.46977 * 329.99918 * 11 9 7 38 38 H 0.97011 * 120.00041 * 179.97438 * 15 14 12 39 39 H 1.08005 * 119.95608 * 180.02562 * 20 5 4 40 40 H 1.09003 * 109.47475 * 60.00174 * 23 22 21 41 41 H 1.09005 * 109.46842 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47269 * 299.99771 * 23 22 21 43 43 H 1.09002 * 109.47232 * 299.99741 * 26 25 24 44 44 H 1.09005 * 109.47428 * 59.99802 * 26 25 24 45 45 H 1.09000 * 109.47319 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3753 0.0005 5 6 1.9188 3.6074 0.0011 6 6 1.0951 4.8693 0.0011 7 6 0.8201 5.2896 1.4218 8 8 1.2502 4.6293 2.3436 9 7 0.0962 6.3995 1.6681 10 6 -0.4229 7.1976 0.5547 11 6 -0.1716 6.8079 3.0494 12 6 0.9268 7.7239 3.5242 13 1 1.7425 7.9769 2.8632 14 6 0.8898 8.2397 4.8024 15 7 -0.1037 7.9320 5.6071 16 14 2.2509 9.3757 5.3908 17 1 2.3035 10.5777 4.5203 18 1 1.9796 9.7896 6.7910 19 1 3.5520 8.6626 5.3293 20 6 3.2989 3.6850 0.0005 21 6 4.0605 2.5262 0.0000 22 8 5.4183 2.6036 0.0000 23 6 5.9934 3.9118 0.0011 24 6 3.4343 1.2855 0.0057 25 8 4.1781 0.1458 0.0118 26 6 4.5381 -0.4008 -1.2584 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3188 0.0005 31 1 1.6421 5.6601 -0.5125 32 1 0.1515 4.6873 -0.5132 33 1 -1.4124 6.8342 0.2775 34 1 -0.4910 8.2424 0.8573 35 1 0.2488 7.1098 -0.2994 36 1 -1.1264 7.3315 3.0948 37 1 -0.2104 5.9255 3.6881 38 1 -0.1296 8.2947 6.5065 39 1 3.7848 4.6496 0.0014 40 1 5.6693 4.4505 0.8917 41 1 7.0804 3.8308 0.0006 42 1 5.6692 4.4520 -0.8883 43 1 3.6351 -0.6435 -1.8187 44 1 5.1257 0.3294 -1.8149 45 1 5.1285 -1.3051 -1.1108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060617395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:23 Heat of formation + Delta-G solvation = -137.849297 kcal Electronic energy + Delta-G solvation = -27925.110557 eV Core-core repulsion = 23908.612618 eV Total energy + Delta-G solvation = -4016.497939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91199 -40.58831 -40.00471 -38.77270 -37.64807 -36.48880 -34.74655 -33.03559 -30.69356 -30.29563 -28.92854 -28.75294 -28.02781 -27.28286 -26.56815 -24.73428 -23.04052 -22.76108 -20.22708 -19.33753 -18.69911 -18.29713 -18.28381 -17.82875 -17.55581 -17.20839 -17.02342 -16.47096 -16.30276 -16.06785 -16.00276 -15.74415 -15.49853 -15.10327 -14.53533 -14.38383 -14.08108 -13.78182 -13.58568 -13.41716 -13.33058 -13.29020 -13.08359 -12.82484 -12.71887 -12.61083 -12.51646 -12.49068 -12.42319 -12.18761 -11.95221 -11.71951 -11.59940 -10.97722 -10.64299 -10.60121 -9.39369 -9.24817 -9.20610 -8.22346 -6.37255 0.06128 0.31179 1.35874 1.40458 1.47443 1.83110 1.86752 2.25098 2.38265 2.60916 2.66904 2.86617 3.07296 3.51852 3.90462 3.91862 3.96919 4.12558 4.28807 4.29589 4.34862 4.37283 4.39324 4.46778 4.49294 4.49920 4.54992 4.59643 4.69256 4.71282 4.77012 4.78110 4.91123 5.00547 5.06990 5.09258 5.24298 5.36422 5.44379 5.56690 5.85418 6.02526 6.06608 6.23846 6.66520 6.70499 6.81375 7.28891 7.51591 8.84396 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.003410 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.806231 B = 8208.331050 C = 9167.113651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.321 6.321 3 C 0.139 3.861 4 C -0.221 4.221 5 C 0.006 3.994 6 C -0.090 4.090 7 C 0.497 3.503 8 O -0.593 6.593 9 N -0.611 5.611 10 C 0.075 3.925 11 C 0.260 3.740 12 C -0.543 4.543 13 H 0.055 0.945 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.966 3.034 17 H -0.257 1.257 18 H -0.280 1.280 19 H -0.279 1.279 20 C -0.224 4.224 21 C 0.138 3.862 22 O -0.321 6.321 23 C 0.017 3.983 24 C 0.000 4.000 25 O -0.337 6.337 26 C 0.033 3.967 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.024 0.976 37 H -0.006 1.006 38 H 0.267 0.733 39 H 0.146 0.854 40 H 0.049 0.951 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -9.868 -21.123 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.093 3.907 4 C -0.240 4.240 5 C 0.006 3.994 6 C -0.129 4.129 7 C 0.286 3.714 8 O -0.474 6.474 9 N -0.342 5.342 10 C -0.067 4.067 11 C 0.138 3.862 12 C -0.581 4.581 13 H 0.073 0.927 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.790 3.210 17 H -0.182 1.182 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.243 4.243 21 C 0.091 3.909 22 O -0.234 6.234 23 C -0.077 4.077 24 C -0.045 4.045 25 O -0.254 6.254 26 C -0.061 4.061 27 H 0.143 0.857 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.042 0.958 37 H 0.012 0.988 38 H 0.075 0.925 39 H 0.163 0.837 40 H 0.068 0.932 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.333 -10.597 -20.331 23.333 hybrid contribution 0.181 1.000 0.916 1.368 sum 4.514 -9.597 -19.415 22.123 Atomic orbital electron populations 1.23421 0.76162 1.05849 1.02338 1.86092 1.23532 1.25573 1.88203 1.18980 0.90542 0.85574 0.95614 1.21100 1.01003 0.90726 1.11130 1.19146 0.92853 0.94177 0.93268 1.20797 1.03123 0.95993 0.92965 1.21136 0.77933 0.80360 0.91958 1.90690 1.52667 1.55433 1.48569 1.48183 1.52205 1.25274 1.08547 1.21997 1.00132 0.95964 0.88587 1.18719 0.95468 0.93525 0.78459 1.21704 1.08816 1.28592 0.99015 0.92652 1.25876 0.98481 0.98353 0.96590 1.70048 1.33033 1.45806 1.08057 0.85490 0.78721 0.79092 0.77659 1.18154 1.20496 1.20434 1.21102 0.94242 0.97673 1.11242 1.19012 0.83490 0.92669 0.95694 1.86086 1.16198 1.32888 1.88231 1.23401 1.00360 0.81728 1.02212 1.17241 0.87059 0.84967 1.15230 1.86108 1.70273 1.38122 1.30868 1.23130 0.99868 0.99003 0.84122 0.85684 0.90584 0.92897 0.83103 0.84953 0.84375 0.90885 0.91735 0.88220 0.95847 0.98751 0.92452 0.83676 0.93206 0.85623 0.90628 0.93384 0.93520 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.32 -8.84 10.28 -79.51 -0.82 -9.66 16 3 C 0.14 4.29 6.70 22.55 0.15 4.44 16 4 C -0.22 -6.27 8.69 22.37 0.19 -6.08 16 5 C 0.01 0.18 4.37 -19.87 -0.09 0.10 16 6 C -0.09 -2.27 4.38 29.10 0.13 -2.14 16 7 C 0.50 19.84 7.67 87.65 0.67 20.52 16 8 O -0.59 -30.91 15.61 -3.01 -0.05 -30.96 16 9 N -0.61 -24.80 2.86 -851.15 -2.43 -27.24 16 10 C 0.08 2.01 10.24 127.77 1.31 3.31 16 11 C 0.26 13.94 5.16 85.63 0.44 14.38 16 12 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 13 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 14 C 0.01 0.34 5.46 84.66 0.46 0.80 16 15 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 16 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 C -0.22 -6.64 8.69 22.37 0.19 -6.45 16 21 C 0.14 4.36 6.70 22.55 0.15 4.51 16 22 O -0.32 -9.28 10.28 -79.58 -0.82 -10.10 16 23 C 0.02 0.34 9.81 113.37 1.11 1.46 16 24 C 0.00 0.00 5.75 22.62 0.13 0.13 16 25 O -0.34 -10.90 9.99 -70.52 -0.70 -11.61 16 26 C 0.03 0.74 11.13 113.37 1.26 2.00 16 27 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.05 7.66 -2.39 -0.02 1.03 16 29 H 0.05 1.03 7.66 -2.38 -0.02 1.01 16 30 H 0.15 3.54 6.29 -2.91 -0.02 3.52 16 31 H 0.13 2.52 7.34 -2.38 -0.02 2.50 16 32 H 0.14 2.42 8.05 -2.39 -0.02 2.40 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 35 H 0.10 1.82 6.44 -2.39 -0.02 1.81 16 36 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 37 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 38 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 39 H 0.15 3.78 6.29 -2.91 -0.02 3.76 16 40 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 41 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.08 1.20 7.66 -2.39 -0.02 1.18 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -84.71 380.70 5.96 -78.76 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.99 Total: 12.81 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 7.47 Total: 7.47 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -2.15 Total: -83.59 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -2.39 Total: -62.32 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -84.71 5.96 -78.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.094 kcal (2) G-P(sol) polarization free energy of solvation -84.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds