Wall clock time and date at job start Tue Mar 31 2020 13:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46877 * 2 1 4 4 C 1.46500 * 120.00122 * 270.00036 * 3 2 1 5 5 C 1.50700 * 109.47101 * 270.00350 * 4 3 2 6 6 H 1.08006 * 120.00021 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99754 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00111 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47188 * 90.00131 * 9 7 5 11 11 H 1.48507 * 109.46793 * 209.99569 * 9 7 5 12 12 H 1.48496 * 109.47272 * 329.99760 * 9 7 5 13 13 C 1.34779 * 119.99713 * 90.00647 * 3 2 1 14 14 O 1.21282 * 119.99926 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00033 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.47021 * 180.02562 * 15 13 3 17 17 C 1.34774 * 116.99772 * 180.02562 * 16 15 13 18 18 O 1.21535 * 120.00082 * 359.97438 * 17 16 15 19 19 C 1.47233 * 119.99785 * 180.02562 * 17 16 15 20 20 C 1.36496 * 127.19758 * 270.02378 * 19 17 16 21 21 C 1.50704 * 125.81203 * 359.97438 * 20 19 17 22 22 O 1.33626 * 108.38562 * 180.02562 * 20 19 17 23 23 C 1.34223 * 110.92137 * 359.97438 * 22 20 19 24 24 C 1.50698 * 125.42863 * 179.97438 * 23 22 20 25 25 C 1.34154 * 109.14345 * 359.71755 * 23 22 20 26 26 C 1.50701 * 127.02780 * 180.30403 * 25 23 22 27 27 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47062 * 299.99624 * 1 2 3 29 29 H 1.09003 * 109.47589 * 59.99719 * 1 2 3 30 30 H 1.09002 * 109.46533 * 240.00001 * 2 1 3 31 31 H 1.08998 * 109.47148 * 120.00124 * 2 1 3 32 32 H 1.08993 * 109.46833 * 30.00250 * 4 3 2 33 33 H 1.08999 * 109.46628 * 150.00435 * 4 3 2 34 34 H 0.96998 * 120.00012 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47103 * 60.00241 * 15 13 3 36 36 H 1.09000 * 109.47247 * 300.00119 * 15 13 3 37 37 H 1.09001 * 109.47060 * 89.99808 * 21 20 19 38 38 H 1.08992 * 109.47388 * 210.00086 * 21 20 19 39 39 H 1.09000 * 109.46886 * 330.00895 * 21 20 19 40 40 H 1.08997 * 109.47135 * 359.97438 * 24 23 22 41 41 H 1.09001 * 109.46856 * 119.98154 * 24 23 22 42 42 H 1.08996 * 109.47430 * 239.98144 * 24 23 22 43 43 H 1.09001 * 109.47416 * 270.15113 * 26 25 23 44 44 H 1.09004 * 109.46826 * 30.15187 * 26 25 23 45 45 H 1.09001 * 109.47567 * 150.14809 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3905 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9133 2.0964 -3.4171 10 1 5.9759 0.8760 -4.2607 11 1 6.3928 3.2641 -4.1994 12 1 6.7735 1.9155 -2.2202 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3056 2.1959 3.5760 17 6 2.1339 1.7101 4.8214 18 8 1.7323 0.5741 4.9806 19 6 2.4320 2.5560 5.9890 20 6 3.6245 2.6688 6.6434 21 6 4.8946 1.9365 6.2945 22 8 3.4740 3.5383 7.6469 23 6 2.2189 4.0125 7.6861 24 6 1.6928 5.0102 8.6854 25 6 1.5090 3.4609 6.6903 26 6 0.0607 3.7142 6.3599 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1382 34 1 3.6755 3.5178 -4.4430 35 1 2.6214 0.4185 2.5301 36 1 0.9433 1.0123 2.5299 37 1 5.4718 2.5284 5.5840 38 1 5.4830 1.7785 7.1982 39 1 4.6476 0.9731 5.8485 40 1 2.4899 5.2889 9.3747 41 1 1.3391 5.8978 8.1608 42 1 0.8690 4.5655 9.2436 43 1 -0.5654 3.0081 6.9054 44 1 -0.2047 4.7319 6.6465 45 1 -0.0956 3.5861 5.2888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061058514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:04 Heat of formation + Delta-G solvation = -113.988804 kcal Electronic energy + Delta-G solvation = -27408.775660 eV Core-core repulsion = 23393.312390 eV Total energy + Delta-G solvation = -4015.463270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.84766 -40.33591 -38.90119 -36.32765 -35.30436 -34.53439 -33.38441 -32.84635 -30.19559 -30.05007 -29.34127 -28.34232 -26.63068 -25.03379 -23.76599 -23.07904 -22.45929 -20.53595 -19.55906 -18.66153 -17.78068 -16.96347 -16.66009 -16.58671 -16.30330 -16.14033 -15.62115 -15.19406 -14.60945 -14.31539 -14.01831 -13.80303 -13.77624 -13.46764 -13.32052 -13.19368 -13.00791 -12.94470 -12.89504 -12.69257 -12.53099 -12.45327 -12.12985 -12.06915 -11.65158 -11.51320 -11.24371 -10.95534 -10.89495 -10.80030 -10.61855 -10.52736 -10.15696 -9.68512 -9.66965 -9.00517 -8.53092 -8.45779 -7.76439 -6.06765 -4.11664 1.32080 1.87038 1.96324 2.41356 2.70577 3.23930 3.29203 3.36102 3.40918 3.86513 4.16597 4.42560 4.55997 4.60457 4.83965 4.85734 4.88994 5.02362 5.11854 5.13188 5.18977 5.20098 5.27954 5.29110 5.34946 5.42502 5.45941 5.49035 5.57702 5.64356 5.68420 5.72164 5.89173 5.98634 6.17494 6.18313 6.29516 6.43783 6.83775 6.98512 7.38710 7.45941 7.64975 7.89309 8.19330 8.28443 8.83529 8.98305 9.53391 11.01452 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.002888 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.718954 B = 9694.195946 C =10381.961819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.517 6.517 15 C 0.047 3.953 16 O -0.319 6.319 17 C 0.545 3.455 18 O -0.499 6.499 19 C -0.209 4.209 20 C 0.060 3.940 21 C -0.084 4.084 22 O -0.167 6.167 23 C -0.014 4.014 24 C -0.070 4.070 25 C -0.138 4.138 26 C -0.087 4.087 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -2.535 22.300 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.393 6.393 15 C -0.030 4.030 16 O -0.233 6.233 17 C 0.388 3.612 18 O -0.387 6.387 19 C -0.212 4.212 20 C 0.009 3.991 21 C -0.140 4.140 22 O -0.065 6.065 23 C -0.062 4.062 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.143 4.143 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.685 -2.056 22.305 22.884 hybrid contribution 0.774 -0.494 -0.657 1.130 sum -3.910 -2.550 21.648 22.145 Atomic orbital electron populations 1.22237 0.96528 1.01708 1.02420 1.21512 0.93773 0.83950 1.03032 1.48211 1.63854 1.13406 1.07099 1.19334 0.96486 0.93719 0.77541 1.21425 0.96856 1.32050 1.06375 0.92393 1.24932 0.97925 0.94844 0.96359 1.69929 1.35726 1.33308 1.14344 0.86483 0.84579 0.77685 0.78602 1.20627 1.21059 1.19865 1.19680 0.79785 0.87155 0.84239 1.90725 1.44381 1.17474 1.86694 1.23035 1.02819 0.92723 0.84473 1.86753 1.78148 1.44529 1.13905 1.20144 0.73643 0.84773 0.82672 1.90854 1.41831 1.19124 1.86937 1.20004 0.95608 1.06504 0.99041 1.22464 0.95977 0.92539 0.88163 1.20532 0.90883 0.99315 1.03305 1.83675 1.30713 1.47348 1.44721 1.21962 0.81669 1.01791 1.00794 1.20316 1.01110 0.95380 0.95848 1.20972 0.97446 0.98857 0.96705 1.20238 0.89376 1.02123 1.02606 0.91875 0.93148 0.91762 0.89381 0.91760 0.94607 0.93701 0.92662 0.88557 0.88656 0.88529 0.89480 0.89036 0.90361 0.89413 0.89564 0.90908 0.90774 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -12.46 2.46 -175.06 -0.43 -12.89 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.88 7.75 -10.99 -0.09 10.80 16 14 O -0.52 -13.54 16.08 -14.11 -0.23 -13.77 16 15 C 0.05 0.79 4.51 36.01 0.16 0.95 16 16 O -0.32 -5.75 9.77 -47.37 -0.46 -6.21 16 17 C 0.55 8.84 7.40 34.38 0.25 9.10 16 18 O -0.50 -8.56 16.90 -19.29 -0.33 -8.89 16 19 C -0.21 -3.05 6.20 -103.30 -0.64 -3.69 16 20 C 0.06 0.76 7.38 -34.93 -0.26 0.50 16 21 C -0.08 -0.80 10.24 36.01 0.37 -0.43 16 22 O -0.17 -2.01 10.52 7.70 0.08 -1.93 16 23 C -0.01 -0.15 7.28 -35.75 -0.26 -0.41 16 24 C -0.07 -0.44 9.93 36.00 0.36 -0.08 16 25 C -0.14 -1.73 6.38 -102.49 -0.65 -2.38 16 26 C -0.09 -0.87 10.15 36.01 0.37 -0.51 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.64 7.22 -51.92 -0.37 0.27 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 35 H 0.10 1.43 7.40 -51.93 -0.38 1.05 16 36 H 0.10 1.39 7.18 -51.93 -0.37 1.02 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.87 7.93 -51.93 -0.41 0.46 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -35.95 390.28 -7.11 -43.06 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.86 Total: -2.70 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.48 Total: 6.38 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.31 Total: -38.58 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.93 Total: -30.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.95 -7.11 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061058514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.926 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds